Wall clock time and date at job start Tue Mar 31 2020 13:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47338 * 2 1 4 4 C 1.34226 * 117.00009 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99911 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47240 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47261 * 305.00415 * 7 6 4 9 9 C 1.53000 * 109.47140 * 65.00312 * 7 6 4 10 10 C 1.52997 * 109.47607 * 185.00288 * 7 6 4 11 11 N 1.46500 * 109.47540 * 174.99990 * 10 7 6 12 12 C 1.34772 * 119.99815 * 179.97438 * 11 10 7 13 13 O 1.21544 * 120.00172 * 0.02562 * 12 11 10 14 14 C 1.47885 * 119.99699 * 180.02562 * 12 11 10 15 15 C 1.39919 * 120.02588 * 359.72117 * 14 12 11 16 16 C 1.38330 * 120.35618 * 179.74351 * 15 14 12 17 17 C 1.37753 * 120.41592 * 0.56218 * 16 15 14 18 18 C 1.40748 * 120.03512 * 359.69676 * 17 16 15 19 19 C 1.41439 * 120.17711 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99590 * 334.93298 * 19 18 17 21 21 C 1.39935 * 120.00093 * 154.93326 * 19 18 17 22 22 N 1.30829 * 119.99861 * 342.57773 * 21 19 18 23 23 Si 1.86802 * 120.00201 * 162.57744 * 21 19 18 24 24 H 1.48501 * 109.46852 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46972 * 119.99508 * 23 21 19 26 26 H 1.48491 * 109.47474 * 240.00036 * 23 21 19 27 27 C 1.38998 * 120.02624 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.47387 * 59.99511 * 1 2 3 29 29 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 299.99423 * 1 2 3 31 31 H 1.09007 * 109.47246 * 240.00177 * 2 1 3 32 32 H 1.09001 * 109.47387 * 120.00489 * 2 1 3 33 33 H 1.08999 * 109.47291 * 300.00768 * 6 4 3 34 34 H 1.09002 * 109.46856 * 60.00893 * 6 4 3 35 35 H 1.08997 * 109.47404 * 59.99797 * 9 7 6 36 36 H 1.08995 * 109.47443 * 180.02562 * 9 7 6 37 37 H 1.09009 * 109.47092 * 300.00224 * 9 7 6 38 38 H 1.09005 * 109.46892 * 295.00785 * 10 7 6 39 39 H 1.09005 * 109.46914 * 55.00047 * 10 7 6 40 40 H 0.97000 * 119.99423 * 359.97438 * 11 10 7 41 41 H 1.07993 * 119.81963 * 0.02562 * 15 14 12 42 42 H 1.08004 * 119.79196 * 180.27967 * 16 15 14 43 43 H 1.07995 * 119.98482 * 179.72084 * 17 16 15 44 44 H 0.97006 * 119.99852 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.19866 * 359.94909 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8573 0.0010 8 1 5.7807 2.2492 0.8425 9 6 5.9260 2.2225 -1.3067 10 6 6.0333 4.2655 0.1275 11 7 7.4909 4.1803 0.2474 12 6 8.2237 5.3046 0.3706 13 8 7.6753 6.3892 0.3826 14 6 9.6951 5.2186 0.4911 15 6 10.3264 3.9699 0.4832 16 6 11.7028 3.8817 0.5902 17 6 12.4668 5.0209 0.7173 18 6 11.8490 6.2855 0.7326 19 6 12.6306 7.4571 0.8625 20 1 13.5977 7.4107 1.3408 21 6 12.1508 8.6763 0.3711 22 7 11.1679 8.6923 -0.4922 23 14 12.9136 10.2810 0.9478 24 1 14.0006 9.9920 1.9174 25 1 13.4725 11.0107 -0.2186 26 1 11.8747 11.1159 1.6025 27 6 10.4515 6.3777 0.6187 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5851 3.4698 -0.8887 34 1 3.5846 3.4692 0.8913 35 1 5.5940 2.8305 -2.1482 36 1 7.0144 2.1650 -1.3066 37 1 5.5095 1.2191 -1.3967 38 1 5.7748 4.8470 -0.7576 39 1 5.6236 4.7508 1.0134 40 1 7.9284 3.3146 0.2382 41 1 9.7364 3.0704 0.3885 42 1 12.1810 2.9134 0.5785 43 1 13.5404 4.9437 0.8049 44 1 10.8355 9.5375 -0.8332 45 1 9.9681 7.3434 0.6293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089992068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:31 Heat of formation + Delta-G solvation = -125.516512 kcal Electronic energy + Delta-G solvation = -25618.670494 eV Core-core repulsion = 21793.163397 eV Total energy + Delta-G solvation = -3825.507098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86728 -39.27114 -37.54679 -36.97091 -35.92920 -33.77152 -33.00296 -32.10542 -30.18781 -29.42734 -28.41691 -26.53525 -25.21819 -23.79403 -22.46894 -21.51703 -20.92442 -20.34045 -19.37866 -18.07629 -17.63631 -17.07516 -16.75213 -16.05102 -15.49956 -15.39460 -14.97415 -14.74490 -14.59197 -14.02330 -13.77560 -13.65419 -13.48717 -13.18588 -13.00395 -12.73538 -12.61597 -12.47477 -12.39806 -12.16125 -11.98845 -11.64532 -11.46367 -11.22655 -11.16547 -11.09600 -10.99884 -10.86629 -10.72128 -10.50647 -10.47274 -10.01718 -9.67665 -9.21700 -9.02138 -8.65132 -7.61923 -7.50932 -6.79177 -4.40680 1.93615 2.21942 2.31820 2.81433 3.08640 3.13500 3.15448 3.69641 3.87989 3.93144 4.28270 4.50864 4.55985 4.59305 4.64838 4.66500 4.85046 4.86537 5.19104 5.26660 5.29961 5.35158 5.40120 5.54472 5.60654 5.61889 5.74213 5.86169 5.87733 6.07941 6.10527 6.15494 6.27680 6.28747 6.72665 6.86370 6.99815 7.02663 7.22033 7.39120 7.47961 7.70985 7.76857 7.93328 8.10284 8.20000 8.51555 8.81246 8.84213 8.96141 10.15739 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.002120 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.859839 B =13203.464539 C =13939.214575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.503 6.503 6 C -0.108 4.108 7 C -0.092 4.092 8 H 0.087 0.913 9 C -0.157 4.157 10 C 0.127 3.873 11 N -0.735 5.735 12 C 0.564 3.436 13 O -0.547 6.547 14 C -0.129 4.129 15 C -0.217 4.217 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.098 3.902 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.910 3.090 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.271 1.271 27 C -0.091 4.091 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.400 0.600 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 -12.839 -0.256 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.390 6.390 6 C -0.146 4.146 7 C -0.111 4.111 8 H 0.106 0.894 9 C -0.214 4.214 10 C 0.003 3.997 11 N -0.390 5.390 12 C 0.355 3.645 13 O -0.425 6.425 14 C -0.132 4.132 15 C -0.237 4.237 16 C -0.116 4.116 17 C -0.231 4.231 18 C 0.096 3.904 19 C -0.489 4.489 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.196 1.196 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.236 0.764 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.682 -12.202 -0.406 21.488 hybrid contribution 0.480 0.059 0.086 0.492 sum -17.202 -12.143 -0.321 21.059 Atomic orbital electron populations 1.21811 0.92605 1.03002 1.03591 1.23024 0.95387 0.80215 1.02641 1.86513 1.24777 1.32441 1.84097 1.23757 0.80405 0.92962 0.72213 1.90656 1.60139 1.43293 1.44939 1.21403 0.95810 0.90924 1.06445 1.21204 0.92123 0.96945 1.00833 0.89446 1.22003 1.02073 1.01588 0.95733 1.21215 0.81298 0.95093 1.02139 1.45915 1.06322 1.09805 1.76944 1.18829 0.87943 0.83055 0.74685 1.90692 1.73502 1.27935 1.50372 1.19474 0.90288 0.95217 1.08202 1.20349 0.94529 0.94418 1.14426 1.20441 0.93507 0.96841 1.00849 1.21106 0.97808 0.92741 1.11454 1.17613 0.91602 0.92380 0.88853 1.19613 1.03941 0.91687 1.33660 0.90049 1.25965 0.94338 1.01429 0.92872 1.69801 1.21641 1.29204 1.20195 0.86237 0.79960 0.80837 0.79589 1.18345 1.19939 1.19568 1.21633 0.93359 0.96835 0.99331 0.91437 0.90231 0.91425 0.91217 0.91205 0.87159 0.87159 0.92636 0.91963 0.91026 0.91484 0.91629 0.76431 0.89244 0.88895 0.88609 0.90513 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.36 -3.30 10.22 -39.25 -0.40 -3.70 16 4 C 0.46 4.61 7.67 36.01 0.28 4.89 16 5 O -0.50 -6.26 13.72 -18.75 -0.26 -6.52 16 6 C -0.11 -0.88 5.29 -27.88 -0.15 -1.03 16 7 C -0.09 -0.95 2.07 -90.62 -0.19 -1.13 16 8 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 9 C -0.16 -1.68 8.81 37.16 0.33 -1.35 16 10 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 11 N -0.74 -12.01 5.23 -61.24 -0.32 -12.33 16 12 C 0.56 12.31 7.77 -12.31 -0.10 12.21 16 13 O -0.55 -13.65 16.33 5.33 0.09 -13.57 16 14 C -0.13 -3.05 5.87 -105.04 -0.62 -3.66 16 15 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 16 C -0.10 -2.11 10.01 -39.72 -0.40 -2.50 16 17 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 18 C 0.10 2.60 5.57 -106.87 -0.59 2.01 16 19 C -0.46 -12.13 9.05 -37.73 -0.34 -12.47 16 20 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.78 -20.84 10.97 55.55 0.61 -20.23 16 23 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 37 H 0.07 0.81 5.96 -51.92 -0.31 0.50 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 5.80 5.67 -40.82 -0.23 5.57 16 41 H 0.09 1.57 6.38 -52.49 -0.33 1.23 16 42 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 45 H 0.13 3.86 5.77 -52.49 -0.30 3.55 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.62 376.38 -8.57 -40.19 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.59 Total: 9.16 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.34 Total: -12.47 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.29 Total: -32.56 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.57 Total: -23.78 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.62 -8.57 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089992068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.331 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds