Wall clock time and date at job start Tue Mar 31 2020 13:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47338 * 2 1 4 4 C 1.34226 * 117.00009 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99911 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47240 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47261 * 305.00415 * 7 6 4 9 9 C 1.53000 * 109.47140 * 65.00312 * 7 6 4 10 10 C 1.52997 * 109.47607 * 185.00288 * 7 6 4 11 11 N 1.46500 * 109.47540 * 174.99990 * 10 7 6 12 12 C 1.34772 * 119.99815 * 179.97438 * 11 10 7 13 13 O 1.21544 * 120.00172 * 0.02562 * 12 11 10 14 14 C 1.47885 * 119.99699 * 180.02562 * 12 11 10 15 15 C 1.39919 * 120.02588 * 359.72117 * 14 12 11 16 16 C 1.38330 * 120.35618 * 179.74351 * 15 14 12 17 17 C 1.37753 * 120.41592 * 0.56218 * 16 15 14 18 18 C 1.40748 * 120.03512 * 359.69676 * 17 16 15 19 19 C 1.41439 * 120.17711 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99590 * 334.93298 * 19 18 17 21 21 C 1.39935 * 120.00093 * 154.93326 * 19 18 17 22 22 N 1.30829 * 119.99861 * 342.57773 * 21 19 18 23 23 Si 1.86802 * 120.00201 * 162.57744 * 21 19 18 24 24 H 1.48501 * 109.46852 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46972 * 119.99508 * 23 21 19 26 26 H 1.48491 * 109.47474 * 240.00036 * 23 21 19 27 27 C 1.38998 * 120.02624 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.47387 * 59.99511 * 1 2 3 29 29 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 299.99423 * 1 2 3 31 31 H 1.09007 * 109.47246 * 240.00177 * 2 1 3 32 32 H 1.09001 * 109.47387 * 120.00489 * 2 1 3 33 33 H 1.08999 * 109.47291 * 300.00768 * 6 4 3 34 34 H 1.09002 * 109.46856 * 60.00893 * 6 4 3 35 35 H 1.08997 * 109.47404 * 59.99797 * 9 7 6 36 36 H 1.08995 * 109.47443 * 180.02562 * 9 7 6 37 37 H 1.09009 * 109.47092 * 300.00224 * 9 7 6 38 38 H 1.09005 * 109.46892 * 295.00785 * 10 7 6 39 39 H 1.09005 * 109.46914 * 55.00047 * 10 7 6 40 40 H 0.97000 * 119.99423 * 359.97438 * 11 10 7 41 41 H 1.07993 * 119.81963 * 0.02562 * 15 14 12 42 42 H 1.08004 * 119.79196 * 180.27967 * 16 15 14 43 43 H 1.07995 * 119.98482 * 179.72084 * 17 16 15 44 44 H 0.97006 * 119.99852 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.19866 * 359.94909 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8573 0.0010 8 1 5.7807 2.2492 0.8425 9 6 5.9260 2.2225 -1.3067 10 6 6.0333 4.2655 0.1275 11 7 7.4909 4.1803 0.2474 12 6 8.2237 5.3046 0.3706 13 8 7.6753 6.3892 0.3826 14 6 9.6951 5.2186 0.4911 15 6 10.3264 3.9699 0.4832 16 6 11.7028 3.8817 0.5902 17 6 12.4668 5.0209 0.7173 18 6 11.8490 6.2855 0.7326 19 6 12.6306 7.4571 0.8625 20 1 13.5977 7.4107 1.3408 21 6 12.1508 8.6763 0.3711 22 7 11.1679 8.6923 -0.4922 23 14 12.9136 10.2810 0.9478 24 1 14.0006 9.9920 1.9174 25 1 13.4725 11.0107 -0.2186 26 1 11.8747 11.1159 1.6025 27 6 10.4515 6.3777 0.6187 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5851 3.4698 -0.8887 34 1 3.5846 3.4692 0.8913 35 1 5.5940 2.8305 -2.1482 36 1 7.0144 2.1650 -1.3066 37 1 5.5095 1.2191 -1.3967 38 1 5.7748 4.8470 -0.7576 39 1 5.6236 4.7508 1.0134 40 1 7.9284 3.3146 0.2382 41 1 9.7364 3.0704 0.3885 42 1 12.1810 2.9134 0.5785 43 1 13.5404 4.9437 0.8049 44 1 10.8355 9.5375 -0.8332 45 1 9.9681 7.3434 0.6293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089992068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:30 Heat of formation + Delta-G solvation = -143.558093 kcal Electronic energy + Delta-G solvation = -25619.452836 eV Core-core repulsion = 21793.163397 eV Total energy + Delta-G solvation = -3826.289439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64015 -40.89147 -38.93704 -38.18777 -37.03510 -35.61538 -34.32724 -32.66621 -31.94077 -31.26996 -29.22025 -27.80312 -27.00812 -24.57792 -23.81422 -22.82194 -22.36683 -21.47491 -20.81444 -19.46845 -18.80152 -17.93388 -17.75613 -17.49488 -17.01624 -16.58128 -16.46445 -16.31950 -15.65960 -15.35259 -15.06346 -15.02960 -14.48860 -14.42354 -14.26804 -14.17500 -13.68000 -13.49880 -13.38720 -13.35016 -12.95350 -12.85377 -12.78865 -12.53586 -12.50480 -12.29697 -12.17710 -12.06672 -11.91026 -11.85836 -11.50844 -11.49591 -11.32061 -11.07920 -10.78520 -10.12141 -9.46056 -9.38018 -8.66030 -6.37855 0.38708 1.00699 1.18817 1.37132 1.47021 1.53373 1.63607 2.11260 2.20089 2.33150 2.79486 3.52525 3.70060 3.77931 3.84872 3.97940 4.01579 4.08876 4.13491 4.36047 4.42216 4.44337 4.48718 4.59464 4.65671 4.74309 4.82351 4.86883 4.91495 4.93000 4.99332 5.09620 5.16804 5.19363 5.22135 5.31455 5.32818 5.47278 5.52707 5.55865 5.86930 5.93035 6.05673 6.29016 6.51420 6.68443 6.74691 6.88564 6.94801 7.32061 8.31198 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.002120 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.859839 B =13203.464539 C =13939.214575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.466 3.534 5 O -0.532 6.532 6 C -0.105 4.105 7 C -0.079 4.079 8 H 0.086 0.914 9 C -0.156 4.156 10 C 0.125 3.875 11 N -0.713 5.713 12 C 0.561 3.439 13 O -0.588 6.588 14 C -0.140 4.140 15 C -0.198 4.198 16 C -0.097 4.097 17 C -0.217 4.217 18 C 0.066 3.934 19 C -0.497 4.497 20 H 0.083 0.917 21 C 0.029 3.971 22 N -0.826 5.826 23 Si 0.983 3.017 24 H -0.252 1.252 25 H -0.264 1.264 26 H -0.270 1.270 27 C -0.129 4.129 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -14.738 -0.082 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.422 6.422 6 C -0.143 4.143 7 C -0.098 4.098 8 H 0.104 0.896 9 C -0.213 4.213 10 C 0.002 3.998 11 N -0.366 5.366 12 C 0.351 3.649 13 O -0.469 6.469 14 C -0.143 4.143 15 C -0.218 4.218 16 C -0.114 4.114 17 C -0.237 4.237 18 C 0.064 3.936 19 C -0.527 4.527 20 H 0.102 0.898 21 C -0.186 4.186 22 N -0.451 5.451 23 Si 0.804 3.196 24 H -0.175 1.175 25 H -0.189 1.189 26 H -0.195 1.195 27 C -0.150 4.150 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.249 0.751 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.563 -14.166 -0.235 23.352 hybrid contribution 0.642 0.397 0.015 0.755 sum -17.921 -13.769 -0.220 22.601 Atomic orbital electron populations 1.21826 0.90691 1.04267 1.03689 1.23251 0.96920 0.79349 1.02492 1.86514 1.24290 1.33580 1.83729 1.24003 0.80510 0.93152 0.71307 1.90647 1.60747 1.44313 1.46477 1.21418 0.94058 0.90403 1.08374 1.21050 0.93537 0.94661 1.00578 0.89614 1.21987 1.01660 1.01494 0.96135 1.21420 0.79056 0.97078 1.02297 1.45736 1.07672 1.08636 1.74529 1.18663 0.87592 0.83770 0.74883 1.90669 1.73962 1.29754 1.52532 1.19805 0.91642 0.95448 1.07410 1.20844 0.95044 0.94800 1.11068 1.20923 0.93621 0.97921 0.98976 1.21410 0.98850 0.92684 1.10751 1.17967 0.91876 0.93860 0.89917 1.19880 1.04547 0.92907 1.35324 0.89847 1.26858 0.94617 1.04759 0.92358 1.69895 1.23440 1.30090 1.21703 0.85143 0.79051 0.76129 0.79316 1.17485 1.18873 1.19493 1.21439 0.93953 0.96707 1.02902 0.91297 0.88406 0.91314 0.91379 0.91419 0.85293 0.85180 0.92076 0.92523 0.91467 0.91599 0.91266 0.75092 0.84788 0.84463 0.87376 0.90287 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.70 6.19 71.98 0.45 1.14 16 3 O -0.36 -6.04 10.22 -51.37 -0.53 -6.56 16 4 C 0.47 8.42 7.67 71.24 0.55 8.96 16 5 O -0.53 -12.50 13.72 21.98 0.30 -12.20 16 6 C -0.10 -1.45 5.29 29.85 0.16 -1.29 16 7 C -0.08 -1.44 2.07 -10.80 -0.02 -1.47 16 8 H 0.09 1.64 7.96 -2.39 -0.02 1.62 16 9 C -0.16 -3.00 8.81 71.98 0.63 -2.36 16 10 C 0.12 3.03 5.06 86.38 0.44 3.47 16 11 N -0.71 -22.01 5.23 -465.94 -2.44 -24.45 16 12 C 0.56 24.45 7.77 86.80 0.67 25.12 16 13 O -0.59 -30.16 16.33 -3.85 -0.06 -30.22 16 14 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 15 C -0.20 -7.84 9.55 22.70 0.22 -7.62 16 16 C -0.10 -3.86 10.01 22.18 0.22 -3.64 16 17 C -0.22 -10.24 9.78 22.77 0.22 -10.02 16 18 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 19 C -0.50 -27.29 9.05 23.47 0.21 -27.08 16 20 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 21 C 0.03 1.52 5.14 85.25 0.44 1.96 16 22 N -0.83 -46.27 10.97 21.82 0.24 -46.03 16 23 Si 0.98 39.83 29.59 68.60 2.03 41.86 16 24 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 C -0.13 -7.23 8.23 23.01 0.19 -7.04 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.90 8.13 -2.38 -0.02 0.89 16 32 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.13 7.18 -2.39 -0.02 1.12 16 37 H 0.07 1.40 5.96 -2.38 -0.01 1.38 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.41 10.69 5.67 -92.71 -0.53 10.17 16 41 H 0.13 4.06 6.38 -2.91 -0.02 4.04 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.29 14.73 8.30 -92.70 -0.77 13.96 16 45 H 0.10 6.16 5.77 -2.91 -0.02 6.14 16 Total: -1.00 -72.64 376.38 4.90 -67.74 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.48 Total: 33.40 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.88 Total: -23.53 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -2.20 Total: -70.48 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.29 Total: -48.99 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -72.64 4.90 -67.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089992068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.818 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds