Wall clock time and date at job start Tue Mar 31 2020 12:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00568 * 2 1 4 4 O 1.42892 * 109.47517 * 134.99782 * 3 2 1 5 5 C 1.35802 * 117.00166 * 180.02562 * 4 3 2 6 6 C 1.38829 * 119.92779 * 359.97438 * 5 4 3 7 7 C 1.37790 * 120.15039 * 179.97438 * 6 5 4 8 8 C 1.39708 * 120.00056 * 0.02954 * 7 6 5 9 9 C 1.47602 * 120.06792 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00085 * 228.36748 * 9 8 7 11 11 N 1.34774 * 120.00382 * 48.36859 * 9 8 7 12 12 C 1.46503 * 120.00187 * 184.33305 * 11 9 8 13 13 C 1.52997 * 109.47159 * 265.30778 * 12 11 9 14 14 C 1.46501 * 120.00057 * 4.33027 * 11 9 8 15 15 C 1.50703 * 109.47277 * 262.65417 * 14 11 9 16 16 H 1.08001 * 120.00033 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99914 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00188 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47564 * 89.99872 * 19 17 15 21 21 H 1.48501 * 109.47023 * 209.99883 * 19 17 15 22 22 H 1.48498 * 109.46954 * 329.99607 * 19 17 15 23 23 C 1.39727 * 119.85792 * 0.24796 * 8 7 6 24 24 C 1.38139 * 119.85244 * 359.45105 * 23 8 7 25 25 O 1.36004 * 120.00589 * 180.29381 * 24 23 8 26 26 C 1.42899 * 116.99801 * 0.27775 * 25 24 23 27 27 H 1.07995 * 120.00565 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99358 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99358 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46701 * 14.99840 * 3 2 1 31 31 H 1.09005 * 109.47096 * 255.00396 * 3 2 1 32 32 H 1.08001 * 119.92776 * 359.96479 * 6 5 4 33 33 H 1.07996 * 120.00148 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47128 * 25.31384 * 12 11 9 35 35 H 1.09005 * 109.47262 * 145.30725 * 12 11 9 36 36 H 1.08997 * 109.47029 * 299.99681 * 13 12 11 37 37 H 1.08998 * 109.47283 * 60.00140 * 13 12 11 38 38 H 1.08998 * 109.46935 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.46729 * 22.65389 * 14 11 9 40 40 H 1.08999 * 109.47427 * 142.65248 * 14 11 9 41 41 H 0.97004 * 120.00152 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.07464 * 179.70633 * 23 8 7 43 43 H 1.09005 * 109.47235 * 300.00194 * 26 25 24 44 44 H 1.09002 * 109.47238 * 60.00284 * 26 25 24 45 45 H 1.08997 * 109.47350 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9086 2.3443 1.0788 6 6 3.6560 3.4651 0.2995 7 6 4.4461 4.5871 0.4241 8 6 5.5045 4.5984 1.3359 9 6 6.3522 5.7993 1.4702 10 8 7.5633 5.6928 1.4598 11 7 5.7837 7.0139 1.6044 12 6 6.6219 8.2148 1.6422 13 6 6.9140 8.5872 3.0972 14 6 4.3276 7.1332 1.7123 15 6 3.7492 7.4651 0.3608 16 1 4.4011 7.5764 -0.4931 17 6 2.3878 7.6266 0.2144 18 7 1.5938 7.4906 1.2540 19 14 1.6708 8.0373 -1.4610 20 1 1.3487 6.7805 -2.1832 21 1 0.4331 8.8391 -1.2866 22 1 2.6607 8.8190 -2.2448 23 6 5.7625 3.4684 2.1162 24 6 4.9628 2.3490 1.9908 25 8 5.2075 1.2495 2.7531 26 6 6.3038 1.3243 3.6666 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4756 1.4866 -0.9927 32 1 2.8384 3.4576 -0.4062 33 1 4.2471 5.4578 -0.1831 34 1 7.5596 8.0200 1.1216 35 1 6.0997 9.0379 1.1543 36 1 5.9764 8.7820 3.6176 37 1 7.4362 7.7642 3.5850 38 1 7.5380 9.4804 3.1253 39 1 3.9108 6.1895 2.0640 40 1 4.0793 7.9257 2.4183 41 1 0.6360 7.6046 1.1510 42 1 6.5828 3.4715 2.8187 43 1 7.2252 1.5086 3.1140 44 1 6.1343 2.1379 4.3719 45 1 6.3887 0.3834 4.2102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:57 Heat of formation + Delta-G solvation = -60.170508 kcal Electronic energy + Delta-G solvation = -27405.385066 eV Core-core repulsion = 23582.711584 eV Total energy + Delta-G solvation = -3822.673482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38578 -39.07495 -38.34200 -36.24481 -35.25769 -34.07074 -32.84899 -30.90889 -29.99764 -29.36909 -27.18145 -27.00494 -26.53511 -23.54698 -23.12762 -22.00485 -21.63893 -19.96670 -19.01968 -18.00299 -17.20671 -16.58438 -16.42311 -16.02305 -15.78768 -15.45330 -15.33113 -14.81285 -14.50720 -14.25260 -14.17025 -13.70093 -13.59489 -13.12564 -12.85916 -12.61238 -12.43668 -12.28311 -12.11632 -11.89167 -11.67305 -11.52211 -11.35914 -11.13231 -11.09820 -10.98158 -10.90941 -10.73080 -10.46787 -10.45338 -10.13226 -9.79569 -9.58870 -9.15376 -8.63904 -8.36121 -7.76753 -7.40485 -6.25749 -4.32926 1.47427 1.83430 1.97852 3.14657 3.23804 3.26347 3.38259 3.47479 3.51301 3.88951 4.20665 4.30332 4.76439 4.98703 5.04630 5.11771 5.20166 5.27607 5.31929 5.32281 5.38257 5.53387 5.61146 5.65053 5.71699 5.73807 5.81990 5.84081 5.89799 6.01192 6.26830 6.33693 6.39688 6.49706 6.50259 6.64932 6.76924 6.81520 6.94713 7.12508 7.20033 7.28316 7.52724 7.67054 7.84087 7.98107 8.30506 8.70925 8.95570 9.32647 10.80123 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.005581 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.648371 B = 5015.552739 C = 7611.097608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 C 0.082 3.918 4 O -0.303 6.303 5 C 0.115 3.885 6 C -0.181 4.181 7 C -0.052 4.052 8 C -0.121 4.121 9 C 0.560 3.440 10 O -0.572 6.572 11 N -0.588 5.588 12 C 0.115 3.885 13 C -0.163 4.163 14 C 0.232 3.768 15 C -0.541 4.541 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.127 4.127 24 C 0.076 3.924 25 O -0.310 6.310 26 C 0.027 3.973 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.135 0.865 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -9.664 0.692 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C 0.007 3.993 4 O -0.216 6.216 5 C 0.069 3.931 6 C -0.200 4.200 7 C -0.070 4.070 8 C -0.124 4.124 9 C 0.349 3.651 10 O -0.454 6.454 11 N -0.317 5.317 12 C -0.008 4.008 13 C -0.221 4.221 14 C 0.112 3.888 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.146 4.146 24 C 0.032 3.968 25 O -0.224 6.224 26 C -0.068 4.068 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.945 -10.028 0.868 10.252 hybrid contribution -0.625 0.631 -0.849 1.229 sum 1.320 -9.398 0.019 9.490 Atomic orbital electron populations 1.23875 0.95480 1.02477 0.99526 1.22669 0.95601 0.97816 1.00697 1.21849 0.88260 0.96749 0.92425 1.86075 1.41900 1.35227 1.58446 1.18389 0.91329 0.87344 0.96006 1.21027 1.03234 0.92964 1.02762 1.22003 0.90191 0.98235 0.96601 1.19551 0.98360 0.94180 1.00354 1.18212 0.86993 0.83581 0.76350 1.90676 1.14447 1.86841 1.53395 1.48194 1.09938 1.04568 1.69043 1.21257 0.95324 0.87823 0.96435 1.22095 1.01466 1.00811 0.97748 1.19554 0.72875 0.98851 0.97485 1.21430 0.92148 1.49480 0.94856 0.91796 1.24931 0.96904 0.94772 0.96873 1.69929 1.04490 1.47969 1.29481 0.86610 0.78863 0.78771 0.84013 1.20336 1.20986 1.19641 1.20925 1.00010 0.91766 1.01941 1.17867 0.95979 0.87805 0.95186 1.86123 1.50053 1.34970 1.51293 1.23005 0.88583 1.03129 0.92113 0.87662 0.88107 0.86430 0.91121 0.91017 0.84749 0.81383 0.90960 0.90301 0.92462 0.92937 0.92406 0.93648 0.94751 0.92410 0.84769 0.92803 0.92866 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 14.31 29.01 0.42 -1.29 16 2 C -0.15 -1.68 9.89 -36.03 -0.36 -2.04 16 3 C 0.08 1.09 5.15 36.00 0.19 1.28 16 4 O -0.30 -5.07 9.89 -33.78 -0.33 -5.40 16 5 C 0.11 2.08 6.71 -38.93 -0.26 1.82 16 6 C -0.18 -3.29 9.01 -39.53 -0.36 -3.65 16 7 C -0.05 -1.05 7.71 -39.20 -0.30 -1.36 16 8 C -0.12 -2.48 4.72 -104.97 -0.50 -2.98 16 9 C 0.56 12.19 7.20 -12.44 -0.09 12.10 16 10 O -0.57 -13.28 16.57 5.29 0.09 -13.19 16 11 N -0.59 -12.49 2.46 -176.26 -0.43 -12.92 16 12 C 0.11 2.12 6.16 -4.04 -0.02 2.10 16 13 C -0.16 -2.62 10.24 37.16 0.38 -2.24 16 14 C 0.23 5.41 4.68 -5.19 -0.02 5.38 16 15 C -0.54 -13.17 6.55 -34.44 -0.23 -13.39 16 16 H 0.06 1.57 7.76 -52.49 -0.41 1.16 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -23.20 13.29 55.43 0.74 -22.46 16 19 Si 0.89 19.36 29.54 -169.99 -5.02 14.33 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 C -0.13 -2.35 8.70 -39.06 -0.34 -2.69 16 24 C 0.08 1.38 6.69 -39.18 -0.26 1.12 16 25 O -0.31 -5.14 10.28 -34.41 -0.35 -5.50 16 26 C 0.03 0.33 9.81 101.05 0.99 1.32 16 27 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.10 0.95 7.90 -52.48 -0.41 0.53 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.07 0.94 7.37 -51.93 -0.38 0.56 16 31 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 32 H 0.13 2.17 6.27 -52.49 -0.33 1.84 16 33 H 0.17 3.65 4.95 -52.49 -0.26 3.39 16 34 H 0.07 1.33 7.35 -51.93 -0.38 0.95 16 35 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.13 5.96 -51.93 -0.31 0.82 16 40 H 0.03 0.85 8.12 -51.93 -0.42 0.43 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.13 2.27 6.28 -52.49 -0.33 1.94 16 43 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 44 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -29.30 376.36 -7.03 -36.33 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.52 Total: 6.01 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.86 Total: -2.87 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.30 Total: -35.38 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.60 Total: -24.09 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.30 -7.03 -36.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.841 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds