Wall clock time and date at job start Tue Mar 31 2020 12:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47317 * 2 1 4 4 C 1.46500 * 119.99989 * 269.99964 * 3 2 1 5 5 C 1.50699 * 109.47038 * 270.00138 * 4 3 2 6 6 H 1.08006 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47014 * 90.00097 * 9 7 5 11 11 H 1.48501 * 109.47281 * 210.00212 * 9 7 5 12 12 H 1.48509 * 109.46968 * 329.99952 * 9 7 5 13 13 C 1.34778 * 119.99709 * 89.99798 * 3 2 1 14 14 O 1.21279 * 119.99600 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00153 * 0.02562 * 13 3 2 16 16 C 1.52998 * 109.46822 * 179.97438 * 15 13 3 17 17 C 1.50708 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.38372 * 119.84796 * 270.27845 * 17 16 15 19 19 C 1.37938 * 120.14963 * 180.28044 * 18 17 16 20 20 C 1.39633 * 119.84852 * 359.44003 * 19 18 17 21 21 C 1.47723 * 120.15316 * 180.30600 * 20 19 18 22 22 O 1.21471 * 119.99606 * 359.97438 * 21 20 19 23 23 O 1.34709 * 120.00179 * 179.97438 * 21 20 19 24 24 C 1.45196 * 116.99971 * 179.97438 * 23 21 20 25 25 C 1.39630 * 119.69783 * 0.27990 * 20 19 18 26 26 C 1.37948 * 119.84903 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47188 * 300.00144 * 1 2 3 29 29 H 1.08999 * 109.47100 * 59.99935 * 1 2 3 30 30 H 1.09004 * 109.47188 * 239.99856 * 2 1 3 31 31 H 1.08999 * 109.47100 * 120.00064 * 2 1 3 32 32 H 1.08998 * 109.46858 * 29.99724 * 4 3 2 33 33 H 1.08992 * 109.47191 * 149.99925 * 4 3 2 34 34 H 0.97004 * 120.00362 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47430 * 59.99954 * 15 13 3 36 36 H 1.09000 * 109.46939 * 299.99240 * 15 13 3 37 37 H 1.09000 * 109.47854 * 59.99901 * 16 15 13 38 38 H 1.08996 * 109.47465 * 299.99569 * 16 15 13 39 39 H 1.07998 * 119.92432 * 0.02562 * 18 17 16 40 40 H 1.08002 * 120.07979 * 179.72201 * 19 18 17 41 41 H 1.09004 * 109.47185 * 60.00164 * 24 23 21 42 42 H 1.09003 * 109.47461 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.47492 * 299.99973 * 24 23 21 44 44 H 1.08004 * 120.07581 * 180.02562 * 25 20 19 45 45 H 1.07997 * 119.92171 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1492 2.3894 -2.8779 8 7 3.3490 3.1247 -3.6186 9 14 5.9136 2.0964 -3.4169 10 1 5.9776 0.8751 -4.2591 11 1 6.3923 3.2636 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0729 1.5328 4.9404 18 6 0.8250 1.6039 5.5340 19 6 0.5898 0.9609 6.7315 20 6 1.6111 0.2274 7.3387 21 6 1.3646 -0.4694 8.6178 22 8 0.2717 -0.4046 9.1439 23 8 2.3519 -1.1766 9.2007 24 6 2.0385 -1.8347 10.4564 25 6 2.8662 0.1551 6.7312 26 6 3.0892 0.8073 5.5363 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1409 -1.1384 34 1 3.6750 3.5152 -4.4445 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 1.6941 3.1307 3.5779 38 1 3.3721 2.5372 3.5771 39 1 0.0346 2.1675 5.0608 40 1 -0.3833 1.0209 7.1961 41 1 1.2233 -2.5417 10.3026 42 1 2.9185 -2.3672 10.8172 43 1 1.7385 -1.0889 11.1926 44 1 3.6604 -0.4109 7.1954 45 1 4.0597 0.7525 5.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109364706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:02 Heat of formation + Delta-G solvation = -108.938861 kcal Electronic energy + Delta-G solvation = -25725.077374 eV Core-core repulsion = 21900.289137 eV Total energy + Delta-G solvation = -3824.788237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85582 -39.53603 -38.83093 -36.74873 -35.36717 -34.10945 -32.78024 -31.30243 -30.48186 -30.03257 -28.16722 -27.15207 -25.19923 -23.10844 -22.98517 -22.87122 -21.80620 -20.70031 -18.33515 -18.26453 -17.42304 -16.68211 -16.66175 -16.35225 -15.67138 -15.42083 -15.24069 -14.92198 -14.63424 -14.32070 -13.85201 -13.81464 -13.58158 -13.40350 -13.34398 -13.00830 -12.74316 -12.49926 -12.13558 -12.06414 -11.90069 -11.69594 -11.45161 -11.40421 -11.18215 -11.16927 -10.94948 -10.88750 -10.81150 -10.64874 -10.50602 -10.13378 -9.63830 -9.26156 -9.15835 -8.81235 -8.44104 -7.66451 -6.04763 -4.09460 0.41567 1.11769 2.24744 2.34854 3.29189 3.35685 3.38470 3.44671 3.49555 3.93930 4.36193 4.43976 4.56766 4.66383 4.70079 4.73529 4.80755 5.04986 5.10343 5.14086 5.16074 5.26412 5.29586 5.30623 5.34571 5.55147 5.61579 5.69657 5.73492 5.80640 5.89813 5.94271 6.00390 6.06421 6.14025 6.22003 6.23566 6.42554 6.48642 6.60846 7.07040 7.40883 7.44644 7.55081 7.91717 8.23423 8.43122 8.89848 9.09597 9.55656 11.03247 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002242 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.322946 B =12484.639724 C =12892.160430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.134 4.134 16 C -0.074 4.074 17 C -0.033 4.033 18 C -0.129 4.129 19 C -0.051 4.051 20 C -0.141 4.141 21 C 0.511 3.489 22 O -0.510 6.510 23 O -0.356 6.356 24 C 0.037 3.963 25 C -0.058 4.058 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -10.266 22.701 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.421 6.421 15 C -0.174 4.174 16 C -0.111 4.111 17 C -0.033 4.033 18 C -0.147 4.147 19 C -0.069 4.069 20 C -0.143 4.143 21 C 0.356 3.644 22 O -0.399 6.399 23 O -0.272 6.272 24 C -0.057 4.057 25 C -0.076 4.076 26 C -0.149 4.149 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.155 0.845 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.691 -9.556 22.687 25.060 hybrid contribution 0.829 -0.380 -0.242 0.943 sum -3.863 -9.936 22.444 24.848 Atomic orbital electron populations 1.22219 0.96841 1.01391 1.02293 1.21410 0.93475 0.84251 1.02652 1.48267 1.63613 1.13229 1.07815 1.19261 0.96225 0.93644 0.78234 1.21429 0.96936 1.31830 1.06186 0.92514 1.24944 0.97854 0.94962 0.96443 1.69931 1.35671 1.33478 1.14301 0.86503 0.84702 0.77663 0.78578 1.20667 1.21101 1.19912 1.20291 0.78526 0.86952 0.85174 1.90671 1.45965 1.18196 1.87300 1.21692 1.03320 0.99553 0.92857 1.20493 1.04355 0.97599 0.88700 1.20401 0.93124 0.94082 0.95736 1.21092 0.97231 1.00965 0.95438 1.21238 0.98346 0.93155 0.94164 1.19040 0.96510 1.04393 0.94312 1.21294 0.82027 0.76212 0.84822 1.90827 1.24945 1.59931 1.64219 1.86547 1.41568 1.61256 1.37846 1.23288 1.02842 0.96989 0.82585 1.21445 0.95559 0.96250 0.94378 1.21157 0.99912 0.98146 0.95649 0.92219 0.93046 0.92084 0.90047 0.91688 0.95097 0.93920 0.92737 0.89331 0.89425 0.89683 0.89539 0.84756 0.84621 0.91780 0.87907 0.91815 0.84531 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.22 2.46 -175.07 -0.43 -12.65 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.50 9.93 7.67 -10.99 -0.08 9.85 16 14 O -0.54 -13.13 15.56 5.56 0.09 -13.04 16 15 C -0.13 -1.81 4.23 -27.89 -0.12 -1.92 16 16 C -0.07 -0.92 4.62 -27.88 -0.13 -1.05 16 17 C -0.03 -0.35 5.14 -104.52 -0.54 -0.88 16 18 C -0.13 -1.26 9.68 -39.64 -0.38 -1.64 16 19 C -0.05 -0.51 9.60 -39.17 -0.38 -0.89 16 20 C -0.14 -1.47 5.87 -104.98 -0.62 -2.09 16 21 C 0.51 5.66 7.90 34.61 0.27 5.94 16 22 O -0.51 -6.75 16.14 -19.24 -0.31 -7.06 16 23 O -0.36 -3.32 9.82 -40.52 -0.40 -3.71 16 24 C 0.04 0.23 10.56 101.05 1.07 1.30 16 25 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 26 C -0.13 -1.25 9.68 -39.64 -0.38 -1.64 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 36 H 0.09 1.01 7.19 -51.93 -0.37 0.64 16 37 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16 38 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.27 7.65 -52.49 -0.40 0.87 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.14 1.03 7.61 -52.48 -0.40 0.64 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -34.44 384.97 -8.12 -42.56 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.83 Total: -1.58 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.76 Total: -1.28 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.31 Total: -38.38 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.62 Total: -23.81 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.44 -8.12 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109364706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.380 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds