Wall clock time and date at job start Tue Mar 31 2020 12:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47317 * 2 1 4 4 C 1.46500 * 119.99989 * 269.99964 * 3 2 1 5 5 C 1.50699 * 109.47038 * 270.00138 * 4 3 2 6 6 H 1.08006 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47014 * 90.00097 * 9 7 5 11 11 H 1.48501 * 109.47281 * 210.00212 * 9 7 5 12 12 H 1.48509 * 109.46968 * 329.99952 * 9 7 5 13 13 C 1.34778 * 119.99709 * 89.99798 * 3 2 1 14 14 O 1.21279 * 119.99600 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00153 * 0.02562 * 13 3 2 16 16 C 1.52998 * 109.46822 * 179.97438 * 15 13 3 17 17 C 1.50708 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.38372 * 119.84796 * 270.27845 * 17 16 15 19 19 C 1.37938 * 120.14963 * 180.28044 * 18 17 16 20 20 C 1.39633 * 119.84852 * 359.44003 * 19 18 17 21 21 C 1.47723 * 120.15316 * 180.30600 * 20 19 18 22 22 O 1.21471 * 119.99606 * 359.97438 * 21 20 19 23 23 O 1.34709 * 120.00179 * 179.97438 * 21 20 19 24 24 C 1.45196 * 116.99971 * 179.97438 * 23 21 20 25 25 C 1.39630 * 119.69783 * 0.27990 * 20 19 18 26 26 C 1.37948 * 119.84903 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47188 * 300.00144 * 1 2 3 29 29 H 1.08999 * 109.47100 * 59.99935 * 1 2 3 30 30 H 1.09004 * 109.47188 * 239.99856 * 2 1 3 31 31 H 1.08999 * 109.47100 * 120.00064 * 2 1 3 32 32 H 1.08998 * 109.46858 * 29.99724 * 4 3 2 33 33 H 1.08992 * 109.47191 * 149.99925 * 4 3 2 34 34 H 0.97004 * 120.00362 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47430 * 59.99954 * 15 13 3 36 36 H 1.09000 * 109.46939 * 299.99240 * 15 13 3 37 37 H 1.09000 * 109.47854 * 59.99901 * 16 15 13 38 38 H 1.08996 * 109.47465 * 299.99569 * 16 15 13 39 39 H 1.07998 * 119.92432 * 0.02562 * 18 17 16 40 40 H 1.08002 * 120.07979 * 179.72201 * 19 18 17 41 41 H 1.09004 * 109.47185 * 60.00164 * 24 23 21 42 42 H 1.09003 * 109.47461 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.47492 * 299.99973 * 24 23 21 44 44 H 1.08004 * 120.07581 * 180.02562 * 25 20 19 45 45 H 1.07997 * 119.92171 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1492 2.3894 -2.8779 8 7 3.3490 3.1247 -3.6186 9 14 5.9136 2.0964 -3.4169 10 1 5.9776 0.8751 -4.2591 11 1 6.3923 3.2636 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0729 1.5328 4.9404 18 6 0.8250 1.6039 5.5340 19 6 0.5898 0.9609 6.7315 20 6 1.6111 0.2274 7.3387 21 6 1.3646 -0.4694 8.6178 22 8 0.2717 -0.4046 9.1439 23 8 2.3519 -1.1766 9.2007 24 6 2.0385 -1.8347 10.4564 25 6 2.8662 0.1551 6.7312 26 6 3.0892 0.8073 5.5363 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1409 -1.1384 34 1 3.6750 3.5152 -4.4445 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 1.6941 3.1307 3.5779 38 1 3.3721 2.5372 3.5771 39 1 0.0346 2.1675 5.0608 40 1 -0.3833 1.0209 7.1961 41 1 1.2233 -2.5417 10.3026 42 1 2.9185 -2.3672 10.8172 43 1 1.7385 -1.0889 11.1926 44 1 3.6604 -0.4109 7.1954 45 1 4.0597 0.7525 5.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109364706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:01 Heat of formation + Delta-G solvation = -128.321185 kcal Electronic energy + Delta-G solvation = -25725.917854 eV Core-core repulsion = 21900.289137 eV Total energy + Delta-G solvation = -3825.628717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63850 -40.81703 -39.88560 -37.53637 -36.96308 -35.22698 -34.74942 -32.03806 -31.74532 -31.24033 -29.25332 -28.46285 -26.41048 -24.74924 -24.09528 -23.66190 -22.97761 -21.51982 -19.77801 -19.08283 -18.61709 -18.20922 -17.89748 -17.40420 -17.17103 -16.67259 -16.20803 -16.10644 -15.82274 -15.57102 -14.81608 -14.69745 -14.55982 -14.48038 -14.41600 -14.24199 -13.82368 -13.78264 -13.51610 -13.20559 -13.11396 -13.02117 -12.80127 -12.68861 -12.46008 -12.39731 -12.29142 -12.12140 -11.90843 -11.83647 -11.71418 -11.67689 -11.63454 -10.63152 -10.57315 -9.98226 -9.83609 -9.39971 -8.20999 -6.35842 -0.37478 0.39628 1.37124 1.40073 1.43888 1.50341 1.67625 1.89863 2.33041 2.47834 2.77034 3.08243 3.53469 3.71509 3.83825 3.99904 4.03011 4.13487 4.18474 4.27477 4.30119 4.33356 4.40859 4.42886 4.49328 4.63607 4.69271 4.70495 4.82086 4.91655 5.00484 5.02405 5.08137 5.09770 5.16767 5.23245 5.25591 5.28132 5.38889 5.42268 5.60157 5.61855 5.85864 5.89224 6.08517 6.63019 6.72223 6.85685 7.30328 7.53973 8.85841 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002242 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.322946 B =12484.639724 C =12892.160430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.494 3.506 14 O -0.599 6.599 15 C -0.117 4.117 16 C -0.067 4.067 17 C -0.037 4.037 18 C -0.127 4.127 19 C -0.056 4.056 20 C -0.152 4.152 21 C 0.511 3.489 22 O -0.539 6.539 23 O -0.357 6.357 24 C 0.029 3.971 25 C -0.052 4.052 26 C -0.130 4.130 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.019 0.981 33 H -0.004 1.004 34 H 0.266 0.734 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.063 0.937 42 H 0.134 0.866 43 H 0.062 0.938 44 H 0.155 0.845 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -12.644 24.215 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.139 3.861 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.283 3.717 14 O -0.481 6.481 15 C -0.157 4.157 16 C -0.104 4.104 17 C -0.037 4.037 18 C -0.145 4.145 19 C -0.074 4.074 20 C -0.153 4.153 21 C 0.358 3.642 22 O -0.431 6.431 23 O -0.273 6.273 24 C -0.064 4.064 25 C -0.070 4.070 26 C -0.148 4.148 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.172 0.828 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.885 -11.991 24.222 27.305 hybrid contribution 0.551 0.343 -0.652 0.920 sum -3.335 -11.648 23.571 26.502 Atomic orbital electron populations 1.22158 0.94735 1.03406 1.01687 1.21737 0.95192 0.81393 1.03920 1.48311 1.63841 1.15091 1.06333 1.18683 0.95219 0.91510 0.80674 1.21714 0.97884 1.31830 1.06413 0.92745 1.25892 1.02459 0.94561 0.96536 1.70057 1.37789 1.34321 1.14769 0.85405 0.78991 0.78109 0.78241 1.18877 1.20793 1.19582 1.21429 0.76953 0.86530 0.86747 1.90639 1.48337 1.20881 1.88234 1.21667 1.05511 0.99558 0.88958 1.20345 1.03290 0.97323 0.89486 1.20205 0.93812 0.94651 0.95019 1.21200 0.97351 1.00702 0.95247 1.21322 0.98571 0.93236 0.94281 1.19194 0.97182 1.04608 0.94305 1.21455 0.81839 0.75969 0.84904 1.90811 1.26078 1.61109 1.65065 1.86537 1.40957 1.60909 1.38903 1.23595 1.04514 0.96969 0.81351 1.21597 0.95489 0.95902 0.94027 1.21315 1.00216 0.97602 0.95666 0.88809 0.91866 0.94524 0.91274 0.87886 0.96309 0.98636 0.92485 0.86864 0.86613 0.90755 0.90914 0.83527 0.84390 0.91824 0.84757 0.91898 0.82768 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.11 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -24.91 2.46 -826.18 -2.03 -26.94 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.00 0.24 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.47 13.29 21.44 0.28 -56.18 16 9 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.49 19.48 7.67 87.66 0.67 20.15 16 14 O -0.60 -30.06 15.56 -3.03 -0.05 -30.11 16 15 C -0.12 -2.89 4.23 29.85 0.13 -2.77 16 16 C -0.07 -1.57 4.62 29.85 0.14 -1.43 16 17 C -0.04 -0.68 5.14 -19.80 -0.10 -0.79 16 18 C -0.13 -2.21 9.68 22.23 0.22 -2.00 16 19 C -0.06 -1.03 9.60 22.54 0.22 -0.81 16 20 C -0.15 -2.88 5.87 -20.10 -0.12 -3.00 16 21 C 0.51 10.65 7.90 70.33 0.56 11.21 16 22 O -0.54 -13.88 16.14 19.93 0.32 -13.56 16 23 O -0.36 -5.98 9.82 -56.19 -0.55 -6.53 16 24 C 0.03 0.30 10.56 113.37 1.20 1.50 16 25 C -0.05 -0.83 9.62 22.54 0.22 -0.61 16 26 C -0.13 -2.15 9.68 22.23 0.22 -1.94 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.35 7.22 -2.39 -0.02 1.34 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 32 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.11 2.29 7.40 -2.39 -0.02 2.27 16 36 H 0.12 2.25 7.19 -2.39 -0.02 2.23 16 37 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 38 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.14 2.43 7.65 -2.91 -0.02 2.41 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.15 1.87 7.61 -2.91 -0.02 1.84 16 45 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -78.41 384.97 6.71 -71.70 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.98 Total: 10.55 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.73 Total: 4.26 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.74 Total: -83.12 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.28 Total: -50.20 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -78.41 6.71 -71.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109364706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.621 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds