Wall clock time and date at job start Tue Mar 31 2020 12:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99779 * 2 1 4 4 C 1.53002 * 109.47519 * 124.99742 * 3 2 1 5 5 O 1.42899 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99811 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46939 * 330.00329 * 6 5 4 8 8 C 1.52994 * 109.47337 * 90.00035 * 6 5 4 9 9 C 1.50697 * 109.47205 * 210.00434 * 6 5 4 10 10 O 1.21286 * 120.00109 * 354.99557 * 9 6 5 11 11 N 1.34773 * 120.00199 * 175.00239 * 9 6 5 12 12 C 1.46505 * 119.99941 * 179.97438 * 11 9 6 13 13 C 1.50702 * 109.47029 * 179.97438 * 12 11 9 14 14 C 1.38329 * 119.96295 * 269.72216 * 13 12 11 15 15 C 1.38280 * 120.13447 * 179.76476 * 14 13 12 16 16 C 1.38123 * 120.07116 * 0.51378 * 15 14 13 17 17 C 1.38858 * 119.93088 * 359.74012 * 16 15 14 18 18 O 1.35748 * 120.06770 * 179.97438 * 17 16 15 19 19 C 1.34825 * 117.00235 * 354.48620 * 18 17 16 20 20 H 1.08005 * 120.00043 * 5.06197 * 19 18 17 21 21 C 1.38658 * 120.00070 * 185.06293 * 19 18 17 22 22 N 1.31559 * 120.00041 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99735 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47092 * 90.00459 * 23 21 19 25 25 H 1.48500 * 109.46879 * 210.00246 * 23 21 19 26 26 H 1.48494 * 109.47431 * 329.99914 * 23 21 19 27 27 C 1.38077 * 119.96751 * 89.99746 * 13 12 11 28 28 H 1.07992 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99655 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00246 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47545 * 4.99468 * 3 2 1 32 32 H 1.08999 * 109.47275 * 244.99949 * 3 2 1 33 33 H 1.09000 * 109.46877 * 60.00116 * 4 3 2 34 34 H 1.08999 * 109.47015 * 300.00365 * 4 3 2 35 35 H 1.08996 * 109.47241 * 60.00026 * 8 6 5 36 36 H 1.09001 * 109.47331 * 180.02562 * 8 6 5 37 37 H 1.09005 * 109.47422 * 300.00151 * 8 6 5 38 38 H 0.97000 * 120.00352 * 359.71516 * 11 9 6 39 39 H 1.08998 * 109.46745 * 299.99312 * 12 11 9 40 40 H 1.08996 * 109.47480 * 59.99921 * 12 11 9 41 41 H 1.07995 * 119.93144 * 0.02562 * 14 13 12 42 42 H 1.08007 * 119.96359 * 180.25468 * 15 14 13 43 43 H 1.07999 * 120.03547 * 179.72553 * 16 15 14 44 44 H 0.96993 * 120.00312 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03689 * 359.95626 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7498 2.5706 1.1812 6 6 4.6893 2.6994 2.2502 7 1 4.3370 2.1349 3.1135 8 6 6.0474 2.1543 1.8041 9 6 4.8293 4.1527 2.6235 10 8 4.2584 5.0033 1.9743 11 7 5.5892 4.5073 3.6787 12 6 5.7258 5.9202 4.0412 13 6 6.6206 6.0451 5.2473 14 6 6.0751 6.0162 6.5182 15 6 6.8934 6.1256 7.6275 16 6 8.2574 6.2748 7.4694 17 6 8.8074 6.3094 6.1949 18 8 10.1475 6.4564 6.0362 19 6 10.8751 6.6779 7.1495 20 1 10.4004 6.6501 8.1193 21 6 12.2327 6.9416 7.0495 22 7 12.9427 7.1572 8.1358 23 14 13.0537 6.9891 5.3723 24 1 12.9984 8.3716 4.8331 25 1 14.4709 6.5650 5.5028 26 1 12.3448 6.0684 4.4478 27 6 7.9834 6.1939 5.0826 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 3.7400 0.5068 1.0921 34 1 2.4772 1.2357 2.1130 35 1 6.3998 2.7187 0.9409 36 1 6.7639 2.2521 2.6197 37 1 5.9461 1.1030 1.5342 38 1 6.0426 3.8267 4.2004 39 1 6.1619 6.4688 3.2064 40 1 4.7438 6.3323 4.2735 41 1 5.0084 5.9037 6.6443 42 1 6.4649 6.0986 8.6186 43 1 8.8954 6.3646 8.3361 44 1 13.8923 7.3420 8.0659 45 1 8.4083 6.2201 4.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113108208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:43 Heat of formation + Delta-G solvation = -90.535430 kcal Electronic energy + Delta-G solvation = -25278.098424 eV Core-core repulsion = 21454.108220 eV Total energy + Delta-G solvation = -3823.990204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24019 -40.76950 -39.05342 -38.44836 -35.99644 -35.82327 -34.45625 -33.10062 -31.80964 -30.93685 -29.89500 -27.60244 -26.99051 -25.10683 -23.81077 -23.31522 -22.30118 -21.53078 -20.67152 -19.72420 -19.14677 -18.17704 -17.97520 -17.06526 -16.88922 -16.73681 -16.59495 -16.15597 -15.81159 -15.70611 -15.64984 -15.14395 -14.94894 -14.57571 -14.37334 -14.36735 -14.18783 -13.85721 -13.65575 -13.39591 -13.26741 -13.10780 -12.80654 -12.60594 -12.53522 -12.47006 -12.38705 -12.03595 -11.96071 -11.94466 -11.32697 -11.03995 -10.91686 -10.54530 -10.26260 -10.16727 -9.78483 -9.12816 -8.50296 -6.23039 0.33246 0.64194 1.31764 1.34058 1.35175 1.51173 1.53824 1.92810 2.27132 2.73323 2.92712 2.98322 3.16879 3.65566 3.76874 3.91110 4.00191 4.02854 4.06180 4.16495 4.25946 4.28929 4.40441 4.44613 4.47818 4.49160 4.64260 4.67710 4.70343 4.79362 4.91083 4.92019 5.03845 5.11213 5.18189 5.19546 5.31054 5.37414 5.62346 5.68427 5.73345 5.74732 5.86039 5.88700 6.09510 6.18782 6.52098 6.84245 7.17289 7.58033 8.61004 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002100 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.944606 B =13331.382260 C =14037.050325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C -0.093 4.093 4 C 0.061 3.939 5 O -0.389 6.389 6 C 0.075 3.925 7 H 0.117 0.883 8 C -0.168 4.168 9 C 0.511 3.489 10 O -0.572 6.572 11 N -0.708 5.708 12 C 0.174 3.826 13 C -0.060 4.060 14 C -0.158 4.158 15 C -0.073 4.073 16 C -0.227 4.227 17 C 0.119 3.881 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.921 5.921 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.169 4.169 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.284 0.716 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 -15.230 -11.645 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.177 4.177 3 C -0.131 4.131 4 C -0.015 4.015 5 O -0.308 6.308 6 C 0.014 3.986 7 H 0.135 0.865 8 C -0.225 4.225 9 C 0.297 3.703 10 O -0.451 6.451 11 N -0.362 5.362 12 C 0.051 3.949 13 C -0.061 4.061 14 C -0.177 4.177 15 C -0.091 4.091 16 C -0.247 4.247 17 C 0.070 3.930 18 O -0.152 6.152 19 C -0.474 4.474 20 H 0.101 0.899 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.186 1.186 27 C -0.188 4.188 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.252 0.748 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.964 -14.437 -12.364 28.298 hybrid contribution 1.152 0.031 0.416 1.225 sum -19.812 -14.406 -11.948 27.255 Atomic orbital electron populations 1.24083 0.96005 1.02674 0.99907 1.22840 0.96137 0.97764 1.00945 1.20633 0.97771 0.96347 0.98329 1.22715 0.94183 0.85658 0.98979 1.88002 1.54894 1.39230 1.48662 1.21970 0.92271 0.91866 0.92491 0.86498 1.22243 0.94455 1.02809 1.03030 1.20994 0.78015 0.91607 0.79654 1.90700 1.47884 1.53537 1.52981 1.45925 1.50320 1.08955 1.31009 1.20048 0.98666 0.82441 0.93753 1.19429 0.91596 1.00193 0.94887 1.21038 1.00552 1.05324 0.90789 1.21144 0.91459 0.96351 1.00170 1.21407 0.97223 1.09478 0.96565 1.19573 0.83302 0.95354 0.94750 1.83519 1.15407 1.81666 1.34659 1.20700 0.91902 1.49617 0.85211 0.89867 1.25238 0.95758 0.95402 1.02303 1.69720 1.08907 1.47857 1.29723 0.85260 0.77650 0.79397 0.78695 1.19385 1.19293 1.18613 1.20271 0.92763 1.09264 0.96536 0.88747 0.86876 0.85675 0.91863 0.90484 0.90970 0.92241 0.92807 0.89449 0.89153 0.74830 0.91429 0.89651 0.83286 0.83793 0.87188 0.90600 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 14.32 67.78 0.97 -0.95 16 2 C -0.16 -1.69 9.52 25.65 0.24 -1.45 16 3 C -0.09 -1.32 6.03 29.85 0.18 -1.14 16 4 C 0.06 0.85 5.73 71.98 0.41 1.26 16 5 O -0.39 -8.39 9.53 -129.99 -1.24 -9.63 16 6 C 0.07 1.30 3.13 29.85 0.09 1.40 16 7 H 0.12 1.28 7.79 -2.39 -0.02 1.27 16 8 C -0.17 -2.35 9.48 71.98 0.68 -1.66 16 9 C 0.51 12.41 7.18 87.66 0.63 13.04 16 10 O -0.57 -19.50 16.51 15.94 0.26 -19.23 16 11 N -0.71 -14.72 5.51 -466.78 -2.57 -17.29 16 12 C 0.17 4.18 5.80 85.63 0.50 4.68 16 13 C -0.06 -1.68 5.25 -19.88 -0.10 -1.78 16 14 C -0.16 -4.08 9.70 22.30 0.22 -3.87 16 15 C -0.07 -2.22 10.04 22.25 0.22 -2.00 16 16 C -0.23 -9.20 9.17 22.39 0.21 -9.00 16 17 C 0.12 5.23 6.65 22.58 0.15 5.38 16 18 O -0.24 -12.80 8.59 -22.66 -0.19 -12.99 16 19 C -0.40 -22.73 9.95 67.92 0.68 -22.06 16 20 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 21 C 0.01 0.66 5.49 84.83 0.47 1.13 16 22 N -0.92 -53.98 13.96 21.61 0.30 -53.68 16 23 Si 0.97 44.62 28.62 68.60 1.96 46.59 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 C -0.17 -5.97 9.65 22.39 0.22 -5.75 16 28 H 0.09 1.00 7.84 -2.91 -0.02 0.98 16 29 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 30 H 0.13 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.06 1.04 7.79 -2.39 -0.02 1.02 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 34 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.01 7.93 -2.39 -0.02 0.99 16 37 H 0.09 0.90 7.87 -2.38 -0.02 0.88 16 38 H 0.41 6.77 8.26 -92.71 -0.77 6.01 16 39 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 40 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 41 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.11 4.96 5.64 -2.91 -0.02 4.94 16 44 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -72.17 386.65 4.50 -67.67 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.22 Total: 21.36 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 5.76 Total: -22.78 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.27 Total: -70.98 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.17 Total: -41.85 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.96 Total: 46.59 kcal Total: -72.17 4.50 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113108208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.870 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds