Wall clock time and date at job start Tue Mar 31 2020 12:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47211 * 2 1 4 4 C 1.46494 * 119.99893 * 264.96624 * 3 2 1 5 5 C 1.50699 * 109.47213 * 264.41856 * 4 3 2 6 6 H 1.07999 * 120.00188 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99797 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00279 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47475 * 60.00045 * 9 7 5 11 11 H 1.48497 * 109.47295 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47118 * 300.00119 * 9 7 5 13 13 C 1.34777 * 119.99578 * 84.96867 * 3 2 1 14 14 O 1.21273 * 120.00339 * 4.08108 * 13 3 2 15 15 C 1.50705 * 119.99647 * 184.07693 * 13 3 2 16 16 H 1.09003 * 109.72363 * 29.00081 * 15 13 3 17 17 C 1.53397 * 109.70225 * 268.41409 * 15 13 3 18 18 O 1.42824 * 108.40333 * 175.59450 * 17 15 13 19 19 C 1.35945 * 117.86371 * 49.17216 * 18 17 15 20 20 C 1.39125 * 118.44118 * 162.81359 * 19 18 17 21 21 C 1.37939 * 120.29926 * 179.79054 * 20 19 18 22 22 C 1.38724 * 119.89660 * 359.97438 * 21 20 19 23 23 O 1.35988 * 120.06986 * 180.09701 * 22 21 20 24 24 C 1.42898 * 116.99860 * 0.02562 * 23 22 21 25 25 C 1.38532 * 119.86291 * 0.08319 * 22 21 20 26 26 C 1.38354 * 121.77634 * 342.74339 * 19 18 17 27 27 C 1.50774 * 121.40657 * 0.54436 * 26 19 18 28 28 H 1.08998 * 109.46552 * 64.63554 * 1 2 3 29 29 H 1.08998 * 109.46825 * 184.63222 * 1 2 3 30 30 H 1.09002 * 109.46877 * 304.63654 * 1 2 3 31 31 H 1.08993 * 109.47093 * 239.99911 * 2 1 3 32 32 H 1.09005 * 109.47170 * 120.00230 * 2 1 3 33 33 H 1.08998 * 109.47466 * 24.42342 * 4 3 2 34 34 H 1.09004 * 109.46683 * 144.41987 * 4 3 2 35 35 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.68540 * 55.85741 * 17 15 13 37 37 H 1.08999 * 109.68896 * 295.33412 * 17 15 13 38 38 H 1.08004 * 119.84969 * 359.80979 * 20 19 18 39 39 H 1.07995 * 120.05765 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47032 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.47320 * 300.00297 * 24 23 22 42 42 H 1.09003 * 109.47058 * 59.99836 * 24 23 22 43 43 H 1.07997 * 119.85996 * 180.02562 * 25 22 21 44 44 H 1.08995 * 109.43676 * 102.20168 * 27 26 19 45 45 H 1.09009 * 109.43073 * 222.10719 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3675 2.0347 -1.2638 5 6 3.8494 1.9041 -1.5043 6 1 4.4692 1.3857 -0.7876 7 6 4.4139 2.4454 -2.6398 8 7 3.6592 3.0761 -3.5128 9 14 6.2507 2.2828 -2.9382 10 1 6.6159 0.8451 -3.0066 11 1 6.6046 2.9453 -4.2193 12 1 6.9921 2.9295 -1.8258 13 6 2.1465 2.0506 1.1628 14 8 1.9286 1.4870 2.2142 15 6 2.5606 3.4996 1.1563 16 1 2.2279 3.9732 0.2326 17 6 4.0870 3.6018 1.2691 18 8 4.4565 4.9768 1.1568 19 6 3.7915 5.8784 1.9270 20 6 4.3560 7.1366 2.1110 21 6 3.7120 8.0822 2.8816 22 6 2.4958 7.7785 3.4757 23 8 1.8569 8.7088 4.2344 24 6 2.4955 9.9792 4.3771 25 6 1.9332 6.5256 3.2942 26 6 2.5802 5.5748 2.5226 27 6 1.9407 4.2195 2.3563 28 1 -0.3632 0.4402 -0.9286 29 1 -0.3633 -1.0243 0.0830 30 1 -0.3633 0.5841 0.8456 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8236 1.5602 -2.0806 34 1 2.0992 3.0900 -1.2134 35 1 4.0564 3.4573 -4.3115 36 1 4.5536 3.0296 0.4672 37 1 4.4108 3.2123 2.2344 38 1 5.3025 7.3741 1.6482 39 1 4.1539 9.0576 3.0222 40 1 1.8818 10.6259 5.0042 41 1 3.4730 9.8446 4.8402 42 1 2.6185 10.4363 3.3952 43 1 0.9862 6.2894 3.7564 44 1 2.1042 3.6283 3.2572 45 1 0.8700 4.3415 2.1919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113992447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:48 Heat of formation + Delta-G solvation = -106.895841 kcal Electronic energy + Delta-G solvation = -27547.305861 eV Core-core repulsion = 23722.606216 eV Total energy + Delta-G solvation = -3824.699645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06182 -40.85877 -39.93044 -37.36603 -37.00721 -35.34022 -34.65355 -32.48580 -31.28494 -30.82029 -28.94327 -28.01025 -26.76019 -25.64211 -24.96463 -23.72838 -23.50943 -21.28625 -19.85307 -18.92002 -18.77910 -18.53906 -17.91611 -17.79483 -17.01385 -16.61778 -16.38020 -16.33617 -15.92014 -15.51640 -15.26324 -15.08878 -14.64390 -14.40854 -14.24674 -14.20550 -14.11687 -14.04614 -13.70458 -13.56103 -13.27064 -13.13460 -12.80999 -12.71469 -12.65539 -12.57294 -12.19552 -11.99496 -11.90551 -11.75913 -11.69766 -11.54233 -11.28628 -10.77332 -10.51716 -9.86255 -9.51576 -8.71016 -8.20234 -6.33582 0.21284 0.43848 1.43372 1.45317 1.50668 1.60178 2.13411 2.35327 2.44957 2.46487 2.70421 3.11685 3.48392 3.64698 3.68976 3.81750 3.87198 4.00403 4.12649 4.23285 4.30079 4.39260 4.42767 4.46093 4.47578 4.53443 4.61739 4.67541 4.76320 4.78799 4.89262 4.91100 4.93285 4.96635 5.01515 5.06067 5.21334 5.29471 5.30743 5.41294 5.55371 5.64217 5.83150 6.04541 6.34323 6.49478 6.55616 6.78850 7.23042 7.38949 8.85456 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.004266 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.174398 B = 6562.557283 C = 8204.298041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.251 3.749 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.527 3.473 14 O -0.584 6.584 15 C -0.133 4.133 16 H 0.095 0.905 17 C 0.080 3.920 18 O -0.321 6.321 19 C 0.070 3.930 20 C -0.116 4.116 21 C -0.167 4.167 22 C 0.091 3.909 23 O -0.333 6.333 24 C 0.017 3.983 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.056 4.056 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 9.217 11.622 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.172 4.172 8 N -0.555 5.555 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.315 3.685 14 O -0.466 6.466 15 C -0.154 4.154 16 H 0.113 0.887 17 C 0.005 3.995 18 O -0.235 6.235 19 C 0.025 3.975 20 C -0.134 4.134 21 C -0.185 4.185 22 C 0.046 3.954 23 O -0.247 6.247 24 C -0.077 4.077 25 C -0.143 4.143 26 C -0.124 4.124 27 C -0.094 4.094 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.182 0.818 40 H 0.137 0.863 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.161 0.839 44 H 0.108 0.892 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.260 9.022 11.914 15.114 hybrid contribution 0.946 -0.183 -0.756 1.225 sum -1.314 8.839 11.157 14.295 Atomic orbital electron populations 1.22025 0.94685 1.03067 1.01338 1.21473 0.95173 0.82244 1.02603 1.48310 1.62342 1.14267 1.07592 1.19148 0.95055 0.92726 0.80054 1.21555 0.93589 1.36606 1.06414 0.92361 1.25554 1.01840 0.94323 0.95479 1.69989 1.37273 1.36641 1.11557 0.85778 0.80824 0.78560 0.77671 1.19510 1.20923 1.19507 1.20169 0.76660 0.88444 0.83205 1.90570 1.53975 1.70430 1.31650 1.21778 0.98256 0.93860 1.01515 0.88664 1.22931 0.92991 0.80137 1.03461 1.86062 1.59281 1.17071 1.61116 1.19082 0.92096 0.91341 0.94962 1.20619 1.01368 0.90900 1.00522 1.21260 0.95366 1.01290 1.00590 1.18862 0.92538 0.89839 0.94188 1.86052 1.48388 1.24040 1.66260 1.23352 0.99694 0.81687 1.02992 1.20205 1.01708 0.90916 1.01491 1.19637 0.94652 0.97034 1.01040 1.20328 1.00125 0.91420 0.97489 0.92766 0.89363 0.93804 0.90005 0.91274 0.95607 0.95765 0.92373 0.86504 0.91596 0.83749 0.81806 0.86293 0.91585 0.91779 0.83935 0.89201 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.20 71.98 0.73 -3.80 16 2 C 0.11 3.79 6.09 86.38 0.53 4.31 16 3 N -0.60 -24.55 2.48 -826.16 -2.05 -26.60 16 4 C 0.25 11.72 4.94 85.63 0.42 12.14 16 5 C -0.54 -27.22 7.42 25.60 0.19 -27.03 16 6 H 0.06 2.92 7.29 -2.91 -0.02 2.90 16 7 C 0.03 1.51 5.46 84.66 0.46 1.97 16 8 N -0.92 -49.97 13.29 21.45 0.28 -49.69 16 9 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.53 21.63 6.66 87.66 0.58 22.22 16 14 O -0.58 -25.33 15.59 -3.01 -0.05 -25.37 16 15 C -0.13 -5.11 2.14 -11.39 -0.02 -5.13 16 16 H 0.10 4.00 5.97 -2.39 -0.01 3.98 16 17 C 0.08 3.14 6.29 72.12 0.45 3.59 16 18 O -0.32 -12.57 10.27 -92.93 -0.95 -13.53 16 19 C 0.07 2.39 6.47 22.51 0.15 2.54 16 20 C -0.12 -3.26 9.93 22.41 0.22 -3.04 16 21 C -0.17 -3.87 9.03 22.32 0.20 -3.67 16 22 C 0.09 2.31 6.68 22.46 0.15 2.46 16 23 O -0.33 -7.37 10.50 -93.42 -0.98 -8.35 16 24 C 0.02 0.21 9.81 113.37 1.11 1.33 16 25 C -0.12 -3.50 9.60 22.40 0.22 -3.29 16 26 C -0.12 -3.95 5.75 -19.75 -0.11 -4.06 16 27 C -0.06 -1.87 5.00 29.89 0.15 -1.72 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 32 H 0.07 2.44 7.52 -2.38 -0.02 2.43 16 33 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 34 H 0.02 1.21 5.95 -2.39 -0.01 1.20 16 35 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.12 5.06 5.46 -2.38 -0.01 5.05 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.16 2.59 6.31 -2.91 -0.02 2.57 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 42 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 43 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.09 3.03 7.42 -2.39 -0.02 3.01 16 45 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -61.37 365.05 4.71 -56.67 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 1.00 Total: 24.69 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.43 Total: -1.19 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.76 Total: -76.29 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.98 Total: -47.25 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -61.37 4.71 -56.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113992447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.231 kcal (2) G-P(sol) polarization free energy of solvation -61.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds