Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47094 * 2 1 4 4 C 1.42905 * 113.99929 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.84938 * 339.66666 * 4 3 2 6 6 C 1.53775 * 113.61757 * 110.86402 * 4 3 2 7 7 C 1.54055 * 86.98597 * 89.15972 * 6 4 3 8 8 H 1.09001 * 113.61419 * 270.88839 * 7 6 4 9 9 N 1.46504 * 113.69275 * 139.98892 * 7 6 4 10 10 C 1.46493 * 120.00240 * 331.01491 * 9 7 6 11 11 S 1.65595 * 119.99763 * 151.01198 * 9 7 6 12 12 O 1.42097 * 104.28020 * 206.07354 * 11 9 7 13 13 O 1.42108 * 104.27852 * 333.93166 * 11 9 7 14 14 C 1.81397 * 104.45102 * 90.00052 * 11 9 7 15 15 C 1.53003 * 109.47256 * 180.02562 * 14 11 9 16 16 C 1.50697 * 109.46799 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00776 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99982 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00167 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99537 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46726 * 89.99938 * 20 18 16 22 22 H 1.48498 * 109.46892 * 209.99744 * 20 18 16 23 23 H 1.48495 * 109.47009 * 329.99857 * 20 18 16 24 24 C 1.53782 * 87.07530 * 25.43560 * 7 6 4 25 25 C 1.52993 * 113.61131 * 220.02288 * 24 7 6 26 26 C 1.53001 * 113.69414 * 89.12766 * 24 7 6 27 27 H 1.09001 * 109.47235 * 300.00005 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99727 * 1 2 3 29 29 H 1.09004 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47235 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47105 * 120.00273 * 2 1 3 32 32 H 1.09001 * 113.61972 * 203.66880 * 6 4 3 33 33 H 1.09005 * 113.61373 * 334.57085 * 6 4 3 34 34 H 1.09000 * 109.47640 * 95.29852 * 10 9 7 35 35 H 1.08996 * 109.47278 * 215.30283 * 10 9 7 36 36 H 1.09000 * 109.47118 * 335.30272 * 10 9 7 37 37 H 1.09001 * 109.47008 * 300.00027 * 14 11 9 38 38 H 1.09002 * 109.46774 * 59.99997 * 14 11 9 39 39 H 1.08995 * 109.46661 * 299.99834 * 15 14 11 40 40 H 1.08999 * 109.46818 * 60.00427 * 15 14 11 41 41 H 0.97000 * 119.99902 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47121 * 176.99785 * 25 24 7 43 43 H 1.08999 * 109.47424 * 297.00031 * 25 24 7 44 44 H 1.09002 * 109.47831 * 57.00334 * 25 24 7 45 45 H 1.09002 * 109.47051 * 297.96429 * 26 24 7 46 46 H 1.09000 * 109.46987 * 57.96232 * 26 24 7 47 47 H 1.08999 * 109.47004 * 177.96103 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9273 0.5545 0.3481 6 6 4.0048 2.0091 -1.3173 7 6 3.8405 3.4146 -0.7083 8 1 2.8659 3.8629 -0.9013 9 7 4.9526 4.3199 -1.0082 10 6 6.2970 3.7810 -1.2277 11 16 4.6899 5.9524 -1.0991 12 8 5.7145 6.4247 -1.9630 13 8 3.3194 6.0674 -1.4565 14 6 4.9586 6.5490 0.5928 15 6 4.7422 8.0629 0.6401 16 6 4.9648 8.5584 2.0458 17 1 5.2342 7.8632 2.8272 18 6 4.8257 9.8995 2.3342 19 7 5.0204 10.3320 3.5608 20 14 4.3604 11.1021 0.9826 21 1 2.8817 11.2184 0.9111 22 1 4.9478 12.4330 1.2805 23 1 4.8819 10.6107 -0.3181 24 6 3.9475 2.7434 0.6712 25 6 2.9848 3.3214 1.7103 26 6 5.3824 2.6288 1.1895 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0433 1.7276 -1.4921 33 1 3.3652 1.8287 -2.1813 34 1 6.4651 3.6476 -2.2964 35 1 7.0364 4.4747 -0.8275 36 1 6.3900 2.8196 -0.7226 37 1 4.2546 6.0604 1.2664 38 1 5.9779 6.3174 0.9020 39 1 5.4459 8.5517 -0.0336 40 1 3.7228 8.2940 0.3310 41 1 4.9222 11.2754 3.7638 42 1 3.0790 2.7644 2.6424 43 1 3.2273 4.3693 1.8871 44 1 1.9620 3.2424 1.3418 45 1 5.9649 2.0049 0.5116 46 1 5.8293 3.6215 1.2442 47 1 5.3753 2.1785 2.1821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122019257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -93.802316 kcal Electronic energy + Delta-G solvation = -26823.328038 eV Core-core repulsion = 23134.640123 eV Total energy + Delta-G solvation = -3688.687915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72308 -37.30896 -36.71786 -35.53021 -34.15787 -33.89825 -31.51172 -31.31942 -30.36247 -28.19123 -26.30240 -25.92622 -23.94343 -23.12342 -22.24796 -21.14137 -19.05120 -18.44566 -17.74648 -17.02265 -16.68752 -15.98482 -15.75728 -15.61471 -15.27747 -14.94000 -14.69225 -14.25856 -13.72246 -13.54743 -13.44816 -13.13460 -12.92399 -12.81628 -12.68297 -12.50114 -12.27993 -12.09075 -11.88833 -11.81038 -11.76566 -11.67710 -11.54579 -11.41473 -11.31666 -11.20401 -11.10688 -10.83009 -10.72731 -10.42743 -10.22651 -10.09120 -9.65051 -9.57755 -9.36041 -8.69754 -8.64452 -6.14889 -4.15778 0.68203 2.94429 3.28193 3.29621 3.35323 3.39995 4.19770 4.27428 4.35602 4.37671 4.48848 4.54963 4.76501 4.80564 4.90252 4.97333 5.07267 5.09182 5.09717 5.16977 5.32344 5.38556 5.43730 5.47348 5.51581 5.57688 5.63687 5.64949 5.72233 5.76998 5.81668 5.86895 5.90355 5.99765 6.00784 6.20357 6.24178 6.33779 6.49342 6.68016 6.85151 6.97022 7.05603 7.56802 8.38588 8.86393 9.45061 10.97485 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003784 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.893330 B = 7396.942643 C = 7919.840247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.075 3.925 5 H 0.077 0.923 6 C -0.162 4.162 7 C 0.139 3.861 8 H 0.130 0.870 9 N -0.994 5.994 10 C 0.081 3.919 11 S 2.584 3.416 12 O -0.965 6.965 13 O -0.963 6.963 14 C -0.583 4.583 15 C -0.006 4.006 16 C -0.517 4.517 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.031 0.969 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -23.489 -6.964 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.016 3.984 5 H 0.094 0.906 6 C -0.201 4.201 7 C 0.032 3.968 8 H 0.147 0.853 9 N -0.829 5.829 10 C -0.064 4.064 11 S 2.683 3.317 12 O -0.955 6.955 13 O -0.954 6.954 14 C -0.716 4.716 15 C -0.046 4.046 16 C -0.556 4.556 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.694 3.306 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.102 4.102 25 C -0.197 4.197 26 C -0.188 4.188 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.573 -22.708 -7.692 24.113 hybrid contribution 0.128 0.314 0.117 0.358 sum -2.445 -22.394 -7.575 23.767 Atomic orbital electron populations 1.21749 0.93718 1.02116 1.03392 1.22509 0.95600 0.83909 0.99869 1.87915 1.19471 1.26059 1.94446 1.22973 0.81688 0.97486 0.96246 0.90555 1.23883 1.02041 0.95972 0.98241 1.22630 0.90707 0.89338 0.94118 0.85284 1.57520 1.14350 1.24635 1.86360 1.21764 0.82013 1.01079 1.01550 1.05821 0.74283 0.72637 0.78913 1.93540 1.59447 1.79187 1.63342 1.93533 1.34302 1.84760 1.82775 1.30371 1.11002 1.09566 1.20669 1.19400 0.97535 0.86722 1.00900 1.20844 1.48532 0.93957 0.92307 0.90404 1.24981 0.94422 0.98233 0.95446 1.69879 1.49178 1.15527 1.18810 0.86940 0.79589 0.80912 0.83126 1.19642 1.20764 1.18633 1.22671 0.96490 0.95080 0.95982 1.21685 0.99525 1.00867 0.97576 1.21799 0.93624 1.02843 1.00496 0.91699 0.91741 0.91263 0.93512 0.93428 0.88516 0.90276 0.92797 0.91232 0.89809 0.85609 0.85777 0.95063 0.95445 0.92408 0.92569 0.92076 0.91039 0.91919 0.90953 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.36 -3.78 8.86 -35.23 -0.31 -4.09 16 4 C 0.08 0.70 3.76 -25.92 -0.10 0.61 16 5 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 6 C -0.16 -1.56 6.99 -25.78 -0.18 -1.74 16 7 C 0.14 1.72 3.74 -66.97 -0.25 1.47 16 8 H 0.13 1.86 6.98 -51.93 -0.36 1.50 16 9 N -0.99 -13.32 2.87 -113.59 -0.33 -13.64 16 10 C 0.08 0.85 7.80 59.84 0.47 1.32 16 11 S 2.58 46.26 5.39 -107.50 -0.58 45.68 16 12 O -0.96 -19.59 17.19 -57.54 -0.99 -20.58 16 13 O -0.96 -19.66 16.62 -57.54 -0.96 -20.62 16 14 C -0.58 -10.97 6.12 37.16 0.23 -10.74 16 15 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 20 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C -0.10 -1.06 1.35 -153.70 -0.21 -1.27 16 25 C -0.14 -1.66 8.98 37.15 0.33 -1.33 16 26 C -0.13 -1.19 7.43 37.16 0.28 -0.91 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.76 5.90 -51.93 -0.31 0.45 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.72 7.98 -51.93 -0.41 0.30 16 36 H 0.08 0.65 3.50 -51.93 -0.18 0.47 16 37 H 0.13 2.19 6.91 -51.92 -0.36 1.83 16 38 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 39 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 40 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.80 6.91 -51.93 -0.36 0.44 16 44 H 0.07 0.89 7.07 -51.93 -0.37 0.52 16 45 H 0.06 0.45 5.41 -51.93 -0.28 0.17 16 46 H 0.07 0.72 7.09 -51.93 -0.37 0.35 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -34.47 373.31 -8.77 -43.24 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.99 Total: -0.50 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 0.65 Total: -25.75 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.45 Total: -40.06 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.26 Total: -45.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 46.26 SS G_CDS: -0.58 Total: 45.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.47 -8.77 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122019257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.565 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds