Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47094 * 2 1 4 4 C 1.42905 * 113.99929 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.84938 * 339.66666 * 4 3 2 6 6 C 1.53775 * 113.61757 * 110.86402 * 4 3 2 7 7 C 1.54055 * 86.98597 * 89.15972 * 6 4 3 8 8 H 1.09001 * 113.61419 * 270.88839 * 7 6 4 9 9 N 1.46504 * 113.69275 * 139.98892 * 7 6 4 10 10 C 1.46493 * 120.00240 * 331.01491 * 9 7 6 11 11 S 1.65595 * 119.99763 * 151.01198 * 9 7 6 12 12 O 1.42097 * 104.28020 * 206.07354 * 11 9 7 13 13 O 1.42108 * 104.27852 * 333.93166 * 11 9 7 14 14 C 1.81397 * 104.45102 * 90.00052 * 11 9 7 15 15 C 1.53003 * 109.47256 * 180.02562 * 14 11 9 16 16 C 1.50697 * 109.46799 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00776 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99982 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00167 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99537 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46726 * 89.99938 * 20 18 16 22 22 H 1.48498 * 109.46892 * 209.99744 * 20 18 16 23 23 H 1.48495 * 109.47009 * 329.99857 * 20 18 16 24 24 C 1.53782 * 87.07530 * 25.43560 * 7 6 4 25 25 C 1.52993 * 113.61131 * 220.02288 * 24 7 6 26 26 C 1.53001 * 113.69414 * 89.12766 * 24 7 6 27 27 H 1.09001 * 109.47235 * 300.00005 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99727 * 1 2 3 29 29 H 1.09004 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47235 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47105 * 120.00273 * 2 1 3 32 32 H 1.09001 * 113.61972 * 203.66880 * 6 4 3 33 33 H 1.09005 * 113.61373 * 334.57085 * 6 4 3 34 34 H 1.09000 * 109.47640 * 95.29852 * 10 9 7 35 35 H 1.08996 * 109.47278 * 215.30283 * 10 9 7 36 36 H 1.09000 * 109.47118 * 335.30272 * 10 9 7 37 37 H 1.09001 * 109.47008 * 300.00027 * 14 11 9 38 38 H 1.09002 * 109.46774 * 59.99997 * 14 11 9 39 39 H 1.08995 * 109.46661 * 299.99834 * 15 14 11 40 40 H 1.08999 * 109.46818 * 60.00427 * 15 14 11 41 41 H 0.97000 * 119.99902 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47121 * 176.99785 * 25 24 7 43 43 H 1.08999 * 109.47424 * 297.00031 * 25 24 7 44 44 H 1.09002 * 109.47831 * 57.00334 * 25 24 7 45 45 H 1.09002 * 109.47051 * 297.96429 * 26 24 7 46 46 H 1.09000 * 109.46987 * 57.96232 * 26 24 7 47 47 H 1.08999 * 109.47004 * 177.96103 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9273 0.5545 0.3481 6 6 4.0048 2.0091 -1.3173 7 6 3.8405 3.4146 -0.7083 8 1 2.8659 3.8629 -0.9013 9 7 4.9526 4.3199 -1.0082 10 6 6.2970 3.7810 -1.2277 11 16 4.6899 5.9524 -1.0991 12 8 5.7145 6.4247 -1.9630 13 8 3.3194 6.0674 -1.4565 14 6 4.9586 6.5490 0.5928 15 6 4.7422 8.0629 0.6401 16 6 4.9648 8.5584 2.0458 17 1 5.2342 7.8632 2.8272 18 6 4.8257 9.8995 2.3342 19 7 5.0204 10.3320 3.5608 20 14 4.3604 11.1021 0.9826 21 1 2.8817 11.2184 0.9111 22 1 4.9478 12.4330 1.2805 23 1 4.8819 10.6107 -0.3181 24 6 3.9475 2.7434 0.6712 25 6 2.9848 3.3214 1.7103 26 6 5.3824 2.6288 1.1895 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0433 1.7276 -1.4921 33 1 3.3652 1.8287 -2.1813 34 1 6.4651 3.6476 -2.2964 35 1 7.0364 4.4747 -0.8275 36 1 6.3900 2.8196 -0.7226 37 1 4.2546 6.0604 1.2664 38 1 5.9779 6.3174 0.9020 39 1 5.4459 8.5517 -0.0336 40 1 3.7228 8.2940 0.3310 41 1 4.9222 11.2754 3.7638 42 1 3.0790 2.7644 2.6424 43 1 3.2273 4.3693 1.8871 44 1 1.9620 3.2424 1.3418 45 1 5.9649 2.0049 0.5116 46 1 5.8293 3.6215 1.2442 47 1 5.3753 2.1785 2.1821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122019257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -118.042589 kcal Electronic energy + Delta-G solvation = -26824.379175 eV Core-core repulsion = 23134.640123 eV Total energy + Delta-G solvation = -3689.739053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54163 -38.24950 -38.05673 -37.06607 -35.92654 -35.07699 -33.49993 -32.01586 -31.13440 -29.04608 -27.89506 -27.13556 -24.84261 -23.75813 -23.20631 -22.87548 -20.22163 -19.49014 -19.34934 -18.60789 -17.69289 -17.18846 -16.90141 -16.56177 -16.43732 -16.18535 -15.85977 -15.66614 -15.24342 -14.84985 -14.46161 -14.29489 -14.02676 -13.82848 -13.58756 -13.54125 -13.40133 -13.25544 -13.16112 -13.08387 -13.03098 -12.96080 -12.83417 -12.66470 -12.49625 -12.25286 -12.15565 -12.05345 -12.00985 -11.77326 -11.61345 -11.55472 -11.24992 -10.91420 -10.85804 -10.28486 -9.74422 -8.37857 -6.43270 -0.75540 1.30142 1.31738 1.42045 1.68310 2.28028 2.65084 2.76848 2.95769 3.12743 3.44782 3.54120 3.68435 3.84766 3.96599 4.03168 4.07421 4.24946 4.31226 4.32340 4.43961 4.52035 4.55244 4.57177 4.62260 4.74643 4.79983 4.86483 4.87939 4.97467 5.00564 5.03294 5.04741 5.09869 5.10428 5.19580 5.21806 5.29852 5.32910 5.45496 5.46130 5.55132 5.71817 6.15772 6.42302 6.62100 7.20898 8.77631 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003784 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.893330 B = 7396.942643 C = 7919.840247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.386 6.386 4 C 0.082 3.918 5 H 0.106 0.894 6 C -0.150 4.150 7 C 0.120 3.880 8 H 0.101 0.899 9 N -0.981 5.981 10 C 0.068 3.932 11 S 2.606 3.394 12 O -0.988 6.988 13 O -0.992 6.992 14 C -0.587 4.587 15 C -0.015 4.015 16 C -0.525 4.525 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.938 5.938 20 Si 0.922 3.078 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.251 1.251 24 C -0.099 4.099 25 C -0.141 4.141 26 C -0.133 4.133 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.270 0.730 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -25.964 -8.208 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.306 6.306 4 C 0.023 3.977 5 H 0.123 0.877 6 C -0.189 4.189 7 C 0.013 3.987 8 H 0.119 0.881 9 N -0.819 5.819 10 C -0.076 4.076 11 S 2.704 3.296 12 O -0.978 6.978 13 O -0.983 6.983 14 C -0.718 4.718 15 C -0.054 4.054 16 C -0.564 4.564 17 H 0.069 0.931 18 C -0.183 4.183 19 N -0.578 5.578 20 Si 0.745 3.255 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.101 4.101 25 C -0.198 4.198 26 C -0.190 4.190 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.812 -25.175 -8.930 26.773 hybrid contribution -0.133 0.959 0.563 1.120 sum -1.944 -24.216 -8.367 25.695 Atomic orbital electron populations 1.21777 0.93701 1.03164 1.02355 1.22692 0.95729 0.82899 1.01071 1.87904 1.20250 1.27885 1.94522 1.22974 0.81515 0.97709 0.95505 0.87657 1.23915 1.03595 0.93130 0.98253 1.22831 0.89164 0.90198 0.96469 0.88091 1.57159 1.16094 1.22552 1.86082 1.22133 0.80091 1.02669 1.02683 1.04899 0.73107 0.73826 0.77771 1.93502 1.59985 1.80629 1.63700 1.93492 1.35965 1.85881 1.82937 1.30357 1.12408 1.06220 1.22830 1.19348 0.97349 0.90363 0.98311 1.21137 1.47747 0.93771 0.93750 0.93132 1.25841 0.94549 1.00267 0.97677 1.69998 1.50719 1.16231 1.20822 0.86062 0.79865 0.78948 0.80610 1.18637 1.19613 1.17509 1.22717 0.97340 0.95623 0.94437 1.21680 0.99458 0.99934 0.98757 1.21855 0.92483 1.02898 1.01735 0.92743 0.92764 0.89181 0.92203 0.92163 0.85901 0.90505 0.92027 0.90986 0.86390 0.84834 0.84079 0.95069 0.95567 0.92079 0.91450 0.94129 0.92250 0.89217 0.92075 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.69 6.50 71.98 0.47 1.16 16 3 O -0.39 -7.48 8.86 -148.98 -1.32 -8.80 16 4 C 0.08 1.29 3.76 31.12 0.12 1.41 16 5 H 0.11 1.09 7.84 -2.38 -0.02 1.07 16 6 C -0.15 -2.41 6.99 31.21 0.22 -2.19 16 7 C 0.12 2.80 3.74 45.61 0.17 2.98 16 8 H 0.10 2.96 6.98 -2.39 -0.02 2.94 16 9 N -0.98 -24.78 2.87 -513.29 -1.47 -26.25 16 10 C 0.07 1.23 7.80 127.77 1.00 2.22 16 11 S 2.61 92.45 5.39 -56.49 -0.30 92.15 16 12 O -0.99 -39.38 17.19 -127.65 -2.19 -41.58 16 13 O -0.99 -41.00 16.62 -127.65 -2.12 -43.13 16 14 C -0.59 -22.19 6.12 71.98 0.44 -21.75 16 15 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 16 C -0.53 -30.20 9.66 25.60 0.25 -29.96 16 17 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 18 C 0.02 0.90 5.47 84.66 0.46 1.37 16 19 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 20 Si 0.92 44.70 27.47 68.60 1.88 46.59 16 21 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 24 C -0.10 -1.92 1.35 -51.66 -0.07 -1.99 16 25 C -0.14 -3.35 8.98 71.98 0.65 -2.70 16 26 C -0.13 -2.00 7.43 71.98 0.53 -1.46 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 1.32 5.90 -2.39 -0.01 1.31 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.30 7.98 -2.39 -0.02 1.28 16 36 H 0.12 1.29 3.50 -2.39 -0.01 1.28 16 37 H 0.13 4.77 6.91 -2.39 -0.02 4.75 16 38 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 39 H 0.03 1.50 7.20 -2.39 -0.02 1.49 16 40 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.10 6.91 -2.39 -0.02 1.08 16 44 H 0.06 1.52 7.07 -2.39 -0.02 1.50 16 45 H 0.09 0.84 5.41 -2.39 -0.01 0.82 16 46 H 0.06 1.07 7.09 -2.39 -0.02 1.06 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.15 373.31 0.75 -75.40 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.88 Total: 16.19 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 5.09 Total: -52.73 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.17 Total: -84.10 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -5.64 Total: -93.51 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 16 Polarization: 92.45 SS G_CDS: -0.30 Total: 92.15 kcal Total: -76.15 0.75 -75.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122019257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -76.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds