Wall clock time and date at job start Tue Mar 31 2020 13:00:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42897 * 109.47099 * 2 1
4 4 C 1.42899 * 114.00278 * 180.02562 * 3 2 1
5 5 H 1.09002 * 112.84243 * 338.30669 * 4 3 2
6 6 C 1.53780 * 113.61709 * 109.50258 * 4 3 2
7 7 C 1.53787 * 87.07905 * 139.98301 * 6 4 3
8 8 H 1.08999 * 113.60843 * 89.11783 * 7 6 4
9 9 N 1.46497 * 113.61099 * 219.93654 * 7 6 4
10 10 C 1.46495 * 120.00474 * 5.82987 * 9 7 6
11 11 S 1.65603 * 119.99751 * 185.83188 * 9 7 6
12 12 O 1.42093 * 104.27826 * 206.06902 * 11 9 7
13 13 O 1.42105 * 104.27690 * 333.92902 * 11 9 7
14 14 C 1.81404 * 104.44980 * 89.99775 * 11 9 7
15 15 C 1.53002 * 109.47116 * 179.97438 * 14 11 9
16 16 C 1.50703 * 109.46875 * 180.02562 * 15 14 11
17 17 H 1.07995 * 120.00146 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99923 * 180.02562 * 16 15 14
19 19 N 1.31515 * 119.99970 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 15
21 21 H 1.48502 * 109.47022 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46874 * 119.99710 * 20 18 16
23 23 H 1.48502 * 109.46986 * 239.99795 * 20 18 16
24 24 C 1.53777 * 87.08117 * 334.56796 * 7 6 4
25 25 C 1.53001 * 113.61670 * 270.88330 * 24 7 6
26 26 C 1.53002 * 113.61478 * 139.98030 * 24 7 6
27 27 H 1.08994 * 109.47065 * 59.99572 * 1 2 3
28 28 H 1.08997 * 109.46780 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.46593 * 299.99378 * 1 2 3
30 30 H 1.08994 * 109.47065 * 120.00428 * 2 1 3
31 31 H 1.09003 * 109.46593 * 240.00622 * 2 1 3
32 32 H 1.08998 * 113.61807 * 254.53294 * 6 4 3
33 33 H 1.09006 * 113.61088 * 25.43959 * 6 4 3
34 34 H 1.09002 * 109.47302 * 84.74724 * 10 9 7
35 35 H 1.09002 * 109.47754 * 204.74330 * 10 9 7
36 36 H 1.08997 * 109.47095 * 324.75192 * 10 9 7
37 37 H 1.08998 * 109.47276 * 300.00101 * 14 11 9
38 38 H 1.09004 * 109.46712 * 59.99909 * 14 11 9
39 39 H 1.08998 * 109.47290 * 300.00287 * 15 14 11
40 40 H 1.08994 * 109.46706 * 60.00617 * 15 14 11
41 41 H 0.97003 * 120.00470 * 179.97438 * 19 18 16
42 42 H 1.08996 * 109.47000 * 163.63102 * 25 24 7
43 43 H 1.09000 * 109.46963 * 283.63002 * 25 24 7
44 44 H 1.08997 * 109.46736 * 43.62762 * 25 24 7
45 45 H 1.09007 * 109.46765 * 302.99944 * 26 24 7
46 46 H 1.09004 * 109.46924 * 62.99601 * 26 24 7
47 47 H 1.08991 * 109.47312 * 182.99861 * 26 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.9266 0.5631 0.3704
6 6 4.0073 1.9780 -1.3289
7 6 4.9915 2.8078 -0.4876
8 1 5.9149 2.2799 -0.2492
9 7 5.2258 4.1536 -1.0167
10 6 4.4517 4.6350 -2.1634
11 16 6.3660 5.1309 -0.3184
12 8 5.9245 6.4493 -0.6116
13 8 6.4508 4.6677 1.0224
14 6 7.8956 4.7568 -1.2189
15 6 9.0377 5.6078 -0.6599
16 6 10.3083 5.2975 -1.4085
17 1 10.3018 4.5667 -2.2037
18 6 11.4790 5.9464 -1.0782
19 7 11.4868 6.8366 -0.1101
20 14 13.0542 5.5613 -2.0055
21 1 12.7802 4.5320 -3.0404
22 1 13.5590 6.7961 -2.6578
23 1 14.0751 5.0500 -1.0561
24 6 3.9461 2.7602 0.6392
25 6 2.9376 3.9097 0.5886
26 6 4.5524 2.5606 2.0297
27 1 -0.3633 0.5139 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3632 0.5138 0.8901
30 1 1.8934 -0.5139 0.8899
31 1 1.8933 -0.5138 -0.8901
32 1 4.4887 1.2043 -1.9271
33 1 3.3056 2.5831 -1.9030
34 1 3.5040 5.0460 -1.8154
35 1 5.0151 5.4105 -2.6825
36 1 4.2598 3.8069 -2.8457
37 1 8.1377 3.7006 -1.1010
38 1 7.7589 4.9824 -2.2766
39 1 8.7954 6.6639 -0.7782
40 1 9.1744 5.3826 0.3977
41 1 12.3105 7.2930 0.1226
42 1 2.0771 3.6657 1.2114
43 1 3.4070 4.8213 0.9583
44 1 2.6105 4.0610 -0.4401
45 1 5.1452 1.6459 2.0397
46 1 5.1908 3.4100 2.2730
47 1 3.7533 2.4838 2.7669
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122019673.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:55
Heat of formation + Delta-G solvation = -104.124542 kcal
Electronic energy + Delta-G solvation = -26522.528389 eV
Core-core repulsion = 22833.392868 eV
Total energy + Delta-G solvation = -3689.135521 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.54958 -37.26084 -36.58030 -35.37107 -34.18787 -33.88399 -31.29849 -31.14536
-30.35033 -27.52139 -26.68699 -25.59066 -23.90843 -22.93201 -22.21482 -21.49288
-19.07092 -18.13642 -17.63197 -16.91524 -16.42513 -16.00890 -15.81216 -15.54951
-15.15936 -14.79965 -14.53966 -14.30359 -13.64250 -13.45952 -13.31312 -13.15652
-12.86755 -12.63720 -12.53869 -12.42033 -12.14554 -11.96871 -11.82458 -11.74629
-11.64392 -11.51351 -11.32192 -11.29258 -11.09967 -11.05528 -10.94049 -10.83825
-10.72865 -10.40644 -10.38102 -10.34727 -9.73370 -9.44259 -9.25918 -8.64143
-8.51153 -6.12902 -4.18408 0.79192 3.01593 3.24589 3.31835 3.35232
3.55171 4.22954 4.32082 4.36458 4.43541 4.51715 4.63645 4.68727
4.79855 4.93614 5.02001 5.09453 5.18304 5.22248 5.30621 5.37414
5.45213 5.50665 5.58141 5.62144 5.65037 5.67363 5.74656 5.76620
5.82434 5.87077 5.90862 6.00551 6.12862 6.14156 6.31888 6.44539
6.49986 6.61894 6.77131 7.11050 7.30241 7.36339 7.80354 8.17568
8.85300 9.46390 10.98154
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.025789 B = 0.003043 C = 0.002973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.494016 B = 9200.242642 C = 9414.767804
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.055 3.945
3 O -0.367 6.367
4 C 0.070 3.930
5 H 0.088 0.912
6 C -0.159 4.159
7 C 0.140 3.860
8 H 0.108 0.892
9 N -0.994 5.994
10 C 0.091 3.909
11 S 2.588 3.412
12 O -0.964 6.964
13 O -0.956 6.956
14 C -0.592 4.592
15 C 0.028 3.972
16 C -0.519 4.519
17 H 0.061 0.939
18 C 0.057 3.943
19 N -0.890 5.890
20 Si 0.899 3.101
21 H -0.272 1.272
22 H -0.282 1.282
23 H -0.282 1.282
24 C -0.086 4.086
25 C -0.113 4.113
26 C -0.148 4.148
27 H 0.062 0.938
28 H 0.068 0.932
29 H 0.062 0.938
30 H 0.047 0.953
31 H 0.046 0.954
32 H 0.075 0.925
33 H 0.102 0.898
34 H 0.056 0.944
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.117 0.883
38 H 0.117 0.883
39 H 0.032 0.968
40 H 0.033 0.967
41 H 0.264 0.736
42 H 0.059 0.941
43 H 0.053 0.947
44 H 0.059 0.941
45 H 0.051 0.949
46 H 0.092 0.908
47 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.726 -13.675 -1.916 24.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.022 4.022
3 O -0.286 6.286
4 C 0.011 3.989
5 H 0.106 0.894
6 C -0.198 4.198
7 C 0.033 3.967
8 H 0.125 0.875
9 N -0.829 5.829
10 C -0.054 4.054
11 S 2.687 3.313
12 O -0.954 6.954
13 O -0.946 6.946
14 C -0.725 4.725
15 C -0.010 4.010
16 C -0.559 4.559
17 H 0.080 0.920
18 C -0.145 4.145
19 N -0.528 5.528
20 Si 0.727 3.273
21 H -0.197 1.197
22 H -0.208 1.208
23 H -0.208 1.208
24 C -0.088 4.088
25 C -0.170 4.170
26 C -0.206 4.206
27 H 0.081 0.919
28 H 0.086 0.914
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.093 0.907
33 H 0.120 0.880
34 H 0.075 0.925
35 H 0.092 0.908
36 H 0.088 0.912
37 H 0.136 0.864
38 H 0.135 0.865
39 H 0.050 0.950
40 H 0.051 0.949
41 H 0.074 0.926
42 H 0.078 0.922
43 H 0.072 0.928
44 H 0.078 0.922
45 H 0.070 0.930
46 H 0.111 0.889
47 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -19.952 -12.771 -1.125 23.716
hybrid contribution 1.443 -0.850 -1.042 1.972
sum -18.509 -13.621 -2.167 23.083
Atomic orbital electron populations
1.21736 0.93974 1.02028 1.03080 1.22486 0.95452 0.84407 0.99851
1.87964 1.20411 1.25652 1.94531 1.23674 0.81149 0.97761 0.96276
0.89375 1.23834 0.98635 0.99702 0.97592 1.22115 0.97343 0.82737
0.94457 0.87475 1.57576 1.53748 1.26362 1.45240 1.21520 0.96699
0.99450 0.87771 1.05795 0.76149 0.73760 0.75571 1.93539 1.80067
1.36218 1.85625 1.93501 1.86651 1.81219 1.33235 1.30509 1.17993
1.10716 1.13294 1.18952 0.90884 0.94060 0.97152 1.21045 0.92619
1.23665 1.18545 0.92045 1.25075 0.99333 0.94910 0.95215 1.69965
1.27914 1.25876 1.29091 0.86423 0.82927 0.78289 0.79711 1.19659
1.20776 1.20775 1.22575 0.95602 0.94774 0.95818 1.21331 0.97388
0.96189 1.02079 1.21897 1.00684 1.03463 0.94513 0.91928 0.91355
0.91907 0.93520 0.93581 0.90682 0.87959 0.92502 0.90759 0.91248
0.86430 0.86465 0.94966 0.94853 0.92578 0.92245 0.92779 0.92175
0.92971 0.88929 0.93040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16
2 C 0.05 0.43 6.51 37.16 0.24 0.67 16
3 O -0.37 -3.83 9.49 -35.23 -0.33 -4.16 16
4 C 0.07 0.70 3.73 -25.92 -0.10 0.61 16
5 H 0.09 0.76 7.76 -51.93 -0.40 0.36 16
6 C -0.16 -1.51 6.36 -25.92 -0.16 -1.68 16
7 C 0.14 1.68 3.26 -67.12 -0.22 1.46 16
8 H 0.11 1.21 8.10 -51.93 -0.42 0.79 16
9 N -0.99 -13.46 2.60 -113.74 -0.30 -13.76 16
10 C 0.09 1.03 8.74 59.84 0.52 1.55 16
11 S 2.59 46.60 5.37 -107.50 -0.58 46.02 16
12 O -0.96 -20.14 16.98 -57.54 -0.98 -21.12 16
13 O -0.96 -18.86 14.87 -57.54 -0.86 -19.72 16
14 C -0.59 -11.42 6.12 37.16 0.23 -11.19 16
15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16
16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16
17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
19 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16
20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16
21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
24 C -0.09 -1.04 1.26 -153.70 -0.19 -1.23 16
25 C -0.11 -1.43 7.54 37.16 0.28 -1.15 16
26 C -0.15 -1.89 9.01 37.16 0.33 -1.56 16
27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.10 0.97 5.63 -51.93 -0.29 0.68 16
34 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16
35 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16
36 H 0.07 0.60 6.28 -51.93 -0.33 0.28 16
37 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16
38 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16
39 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16
40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16
41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
42 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16
43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
44 H 0.06 0.72 5.26 -51.93 -0.27 0.44 16
45 H 0.05 0.59 8.01 -51.92 -0.42 0.17 16
46 H 0.09 1.44 5.89 -51.93 -0.31 1.14 16
47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
LS Contribution 378.73 15.07 5.71 5.71
Total: -1.00 -33.75 378.73 -9.06 -42.80
By element:
Atomic # 1 Polarization: 7.81 SS G_CDS: -8.21 Total: -0.40 kcal
Atomic # 6 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.76 kcal
Atomic # 7 Polarization: -40.02 SS G_CDS: 0.44 Total: -39.58 kcal
Atomic # 8 Polarization: -42.83 SS G_CDS: -2.17 Total: -45.00 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Atomic # 16 Polarization: 46.60 SS G_CDS: -0.58 Total: 46.02 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -33.75 -9.06 -42.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122019673.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.320 kcal
(2) G-P(sol) polarization free energy of solvation -33.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds