Wall clock time and date at job start Tue Mar 31 2020 13:00:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42897 * 109.47099 * 2 1
4 4 C 1.42899 * 114.00278 * 180.02562 * 3 2 1
5 5 H 1.09002 * 112.84243 * 338.30669 * 4 3 2
6 6 C 1.53780 * 113.61709 * 109.50258 * 4 3 2
7 7 C 1.53787 * 87.07905 * 139.98301 * 6 4 3
8 8 H 1.08999 * 113.60843 * 89.11783 * 7 6 4
9 9 N 1.46497 * 113.61099 * 219.93654 * 7 6 4
10 10 C 1.46495 * 120.00474 * 5.82987 * 9 7 6
11 11 S 1.65603 * 119.99751 * 185.83188 * 9 7 6
12 12 O 1.42093 * 104.27826 * 206.06902 * 11 9 7
13 13 O 1.42105 * 104.27690 * 333.92902 * 11 9 7
14 14 C 1.81404 * 104.44980 * 89.99775 * 11 9 7
15 15 C 1.53002 * 109.47116 * 179.97438 * 14 11 9
16 16 C 1.50703 * 109.46875 * 180.02562 * 15 14 11
17 17 H 1.07995 * 120.00146 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99923 * 180.02562 * 16 15 14
19 19 N 1.31515 * 119.99970 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 15
21 21 H 1.48502 * 109.47022 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46874 * 119.99710 * 20 18 16
23 23 H 1.48502 * 109.46986 * 239.99795 * 20 18 16
24 24 C 1.53777 * 87.08117 * 334.56796 * 7 6 4
25 25 C 1.53001 * 113.61670 * 270.88330 * 24 7 6
26 26 C 1.53002 * 113.61478 * 139.98030 * 24 7 6
27 27 H 1.08994 * 109.47065 * 59.99572 * 1 2 3
28 28 H 1.08997 * 109.46780 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.46593 * 299.99378 * 1 2 3
30 30 H 1.08994 * 109.47065 * 120.00428 * 2 1 3
31 31 H 1.09003 * 109.46593 * 240.00622 * 2 1 3
32 32 H 1.08998 * 113.61807 * 254.53294 * 6 4 3
33 33 H 1.09006 * 113.61088 * 25.43959 * 6 4 3
34 34 H 1.09002 * 109.47302 * 84.74724 * 10 9 7
35 35 H 1.09002 * 109.47754 * 204.74330 * 10 9 7
36 36 H 1.08997 * 109.47095 * 324.75192 * 10 9 7
37 37 H 1.08998 * 109.47276 * 300.00101 * 14 11 9
38 38 H 1.09004 * 109.46712 * 59.99909 * 14 11 9
39 39 H 1.08998 * 109.47290 * 300.00287 * 15 14 11
40 40 H 1.08994 * 109.46706 * 60.00617 * 15 14 11
41 41 H 0.97003 * 120.00470 * 179.97438 * 19 18 16
42 42 H 1.08996 * 109.47000 * 163.63102 * 25 24 7
43 43 H 1.09000 * 109.46963 * 283.63002 * 25 24 7
44 44 H 1.08997 * 109.46736 * 43.62762 * 25 24 7
45 45 H 1.09007 * 109.46765 * 302.99944 * 26 24 7
46 46 H 1.09004 * 109.46924 * 62.99601 * 26 24 7
47 47 H 1.08991 * 109.47312 * 182.99861 * 26 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.9266 0.5631 0.3704
6 6 4.0073 1.9780 -1.3289
7 6 4.9915 2.8078 -0.4876
8 1 5.9149 2.2799 -0.2492
9 7 5.2258 4.1536 -1.0167
10 6 4.4517 4.6350 -2.1634
11 16 6.3660 5.1309 -0.3184
12 8 5.9245 6.4493 -0.6116
13 8 6.4508 4.6677 1.0224
14 6 7.8956 4.7568 -1.2189
15 6 9.0377 5.6078 -0.6599
16 6 10.3083 5.2975 -1.4085
17 1 10.3018 4.5667 -2.2037
18 6 11.4790 5.9464 -1.0782
19 7 11.4868 6.8366 -0.1101
20 14 13.0542 5.5613 -2.0055
21 1 12.7802 4.5320 -3.0404
22 1 13.5590 6.7961 -2.6578
23 1 14.0751 5.0500 -1.0561
24 6 3.9461 2.7602 0.6392
25 6 2.9376 3.9097 0.5886
26 6 4.5524 2.5606 2.0297
27 1 -0.3633 0.5139 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3632 0.5138 0.8901
30 1 1.8934 -0.5139 0.8899
31 1 1.8933 -0.5138 -0.8901
32 1 4.4887 1.2043 -1.9271
33 1 3.3056 2.5831 -1.9030
34 1 3.5040 5.0460 -1.8154
35 1 5.0151 5.4105 -2.6825
36 1 4.2598 3.8069 -2.8457
37 1 8.1377 3.7006 -1.1010
38 1 7.7589 4.9824 -2.2766
39 1 8.7954 6.6639 -0.7782
40 1 9.1744 5.3826 0.3977
41 1 12.3105 7.2930 0.1226
42 1 2.0771 3.6657 1.2114
43 1 3.4070 4.8213 0.9583
44 1 2.6105 4.0610 -0.4401
45 1 5.1452 1.6459 2.0397
46 1 5.1908 3.4100 2.2730
47 1 3.7533 2.4838 2.7669
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122019673.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:54
Heat of formation + Delta-G solvation = -126.948080 kcal
Electronic energy + Delta-G solvation = -26523.518092 eV
Core-core repulsion = 22833.392868 eV
Total energy + Delta-G solvation = -3690.125224 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.41090 -38.15580 -37.99204 -36.92183 -35.90034 -35.19274 -33.12737 -31.93314
-31.19086 -28.52386 -27.67697 -27.54817 -24.80197 -23.63162 -23.40725 -22.97677
-20.23397 -19.30745 -18.99431 -18.38986 -17.67243 -17.20709 -17.00984 -16.53740
-16.51867 -16.13358 -15.85379 -15.41334 -15.01622 -14.53743 -14.43045 -14.21808
-14.07902 -13.77776 -13.68413 -13.47059 -13.29459 -13.16579 -13.10291 -12.95600
-12.95247 -12.84827 -12.73951 -12.61042 -12.36077 -12.26787 -12.12006 -12.06841
-11.97440 -11.77769 -11.68199 -11.57305 -11.26106 -11.03320 -10.66897 -10.18748
-9.75879 -8.27146 -6.41517 -0.67288 1.39984 1.40814 1.54153 1.77226
2.37145 2.83703 2.89814 3.06063 3.20288 3.44702 3.53123 3.66876
3.86258 3.97134 4.09438 4.15783 4.26630 4.31972 4.38115 4.47528
4.55019 4.59013 4.69147 4.73534 4.75265 4.83512 4.85885 4.91099
4.97437 5.00730 5.02974 5.11061 5.13958 5.19304 5.25922 5.26353
5.31602 5.39481 5.45307 5.58904 5.67300 5.74652 6.05205 6.44171
6.72451 7.28840 8.85353
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.025789 B = 0.003043 C = 0.002973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.494016 B = 9200.242642 C = 9414.767804
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.048 3.952
3 O -0.384 6.384
4 C 0.079 3.921
5 H 0.106 0.894
6 C -0.143 4.143
7 C 0.125 3.875
8 H 0.115 0.885
9 N -0.981 5.981
10 C 0.080 3.920
11 S 2.608 3.392
12 O -0.998 6.998
13 O -0.977 6.977
14 C -0.591 4.591
15 C 0.022 3.978
16 C -0.538 4.538
17 H 0.075 0.925
18 C -0.005 4.005
19 N -0.935 5.935
20 Si 0.975 3.025
21 H -0.255 1.255
22 H -0.278 1.278
23 H -0.277 1.277
24 C -0.099 4.099
25 C -0.110 4.110
26 C -0.148 4.148
27 H 0.058 0.942
28 H 0.086 0.914
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.059 0.941
32 H 0.100 0.900
33 H 0.106 0.894
34 H 0.060 0.940
35 H 0.071 0.929
36 H 0.104 0.896
37 H 0.140 0.860
38 H 0.137 0.863
39 H 0.002 0.998
40 H 0.006 0.994
41 H 0.267 0.733
42 H 0.060 0.940
43 H 0.027 0.973
44 H 0.068 0.932
45 H 0.066 0.934
46 H 0.058 0.942
47 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.366 -16.554 -4.047 26.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.028 4.028
3 O -0.303 6.303
4 C 0.020 3.980
5 H 0.124 0.876
6 C -0.182 4.182
7 C 0.019 3.981
8 H 0.133 0.867
9 N -0.819 5.819
10 C -0.064 4.064
11 S 2.706 3.294
12 O -0.988 6.988
13 O -0.967 6.967
14 C -0.722 4.722
15 C -0.017 4.017
16 C -0.577 4.577
17 H 0.094 0.906
18 C -0.204 4.204
19 N -0.575 5.575
20 Si 0.798 3.202
21 H -0.178 1.178
22 H -0.204 1.204
23 H -0.203 1.203
24 C -0.101 4.101
25 C -0.167 4.167
26 C -0.205 4.205
27 H 0.077 0.923
28 H 0.105 0.895
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.119 0.881
33 H 0.124 0.876
34 H 0.078 0.922
35 H 0.089 0.911
36 H 0.123 0.877
37 H 0.158 0.842
38 H 0.155 0.845
39 H 0.020 0.980
40 H 0.025 0.975
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.046 0.954
44 H 0.087 0.913
45 H 0.085 0.915
46 H 0.077 0.923
47 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -20.591 -15.654 -3.264 26.071
hybrid contribution 1.512 0.021 -0.323 1.546
sum -19.079 -15.633 -3.586 24.925
Atomic orbital electron populations
1.21752 0.93406 1.03074 1.02455 1.22679 0.95976 0.83348 1.00779
1.87944 1.20420 1.27375 1.94599 1.23591 0.81400 0.96993 0.95987
0.87617 1.23794 0.97531 0.99524 0.97397 1.22474 0.98298 0.81910
0.95434 0.86728 1.57174 1.52176 1.26755 1.45820 1.21811 0.96297
1.00885 0.87418 1.04924 0.76094 0.73363 0.75038 1.93488 1.80555
1.38753 1.86023 1.93481 1.87043 1.81463 1.34753 1.30414 1.16751
1.10736 1.14345 1.18795 0.93246 0.93623 0.96002 1.21545 0.93532
1.23749 1.18853 0.90649 1.26146 1.03499 0.94605 0.96115 1.70113
1.29111 1.27243 1.30991 0.85253 0.77916 0.78486 0.78532 1.17845
1.20357 1.20265 1.22674 0.95853 0.96114 0.95498 1.21288 0.97490
0.95478 1.02451 1.21864 1.00520 1.02680 0.95473 0.92295 0.89504
0.92780 0.92913 0.92261 0.88128 0.87586 0.92182 0.91068 0.87717
0.84161 0.84508 0.97963 0.97546 0.92374 0.92107 0.95386 0.91290
0.91456 0.92291 0.92591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16
2 C 0.05 0.62 6.51 71.98 0.47 1.08 16
3 O -0.38 -6.98 9.49 -148.98 -1.41 -8.39 16
4 C 0.08 1.34 3.73 31.12 0.12 1.46 16
5 H 0.11 1.43 7.76 -2.39 -0.02 1.42 16
6 C -0.14 -2.18 6.36 31.12 0.20 -1.98 16
7 C 0.12 2.71 3.26 45.52 0.15 2.86 16
8 H 0.12 2.32 8.10 -2.39 -0.02 2.30 16
9 N -0.98 -25.26 2.60 -513.78 -1.34 -26.60 16
10 C 0.08 1.64 8.74 127.77 1.12 2.76 16
11 S 2.61 95.35 5.37 -56.49 -0.30 95.04 16
12 O -1.00 -43.00 16.98 -127.65 -2.17 -45.17 16
13 O -0.98 -39.92 14.87 -127.65 -1.90 -41.82 16
14 C -0.59 -22.69 6.12 71.98 0.44 -22.25 16
15 C 0.02 1.18 4.98 29.85 0.15 1.33 16
16 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16
17 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16
18 C -0.01 -0.31 5.46 84.65 0.46 0.15 16
19 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16
20 Si 0.97 43.38 29.54 68.60 2.03 45.41 16
21 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16
22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
24 C -0.10 -2.28 1.26 -51.66 -0.07 -2.34 16
25 C -0.11 -2.75 7.54 71.98 0.54 -2.20 16
26 C -0.15 -3.73 9.01 71.98 0.65 -3.08 16
27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.11 1.57 5.63 -2.38 -0.01 1.55 16
34 H 0.06 1.21 6.60 -2.39 -0.02 1.19 16
35 H 0.07 1.52 7.60 -2.39 -0.02 1.51 16
36 H 0.10 1.42 6.28 -2.39 -0.02 1.40 16
37 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16
38 H 0.14 4.64 8.14 -2.39 -0.02 4.63 16
39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16
40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
42 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16
43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16
44 H 0.07 1.56 5.26 -2.39 -0.01 1.54 16
45 H 0.07 1.44 8.01 -2.38 -0.02 1.42 16
46 H 0.06 1.90 5.89 -2.38 -0.01 1.89 16
47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -75.46 378.73 1.32 -74.13
By element:
Atomic # 1 Polarization: 16.51 SS G_CDS: 0.93 Total: 17.43 kcal
Atomic # 6 Polarization: -58.15 SS G_CDS: 5.20 Total: -52.95 kcal
Atomic # 7 Polarization: -82.63 SS G_CDS: -1.05 Total: -83.68 kcal
Atomic # 8 Polarization: -89.91 SS G_CDS: -5.48 Total: -95.39 kcal
Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal
Atomic # 16 Polarization: 95.35 SS G_CDS: -0.30 Total: 95.04 kcal
Total: -75.46 1.32 -74.13 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122019673.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.813 kcal
(2) G-P(sol) polarization free energy of solvation -75.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds