Wall clock time and date at job start Tue Mar 31 2020 12:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46722 * 2 1 4 4 C 1.37092 * 119.99885 * 268.82955 * 3 2 1 5 5 H 1.07996 * 119.99888 * 138.25570 * 4 3 2 6 6 C 1.38952 * 120.00242 * 318.24800 * 4 3 2 7 7 N 1.31412 * 120.00039 * 341.86132 * 6 4 3 8 8 Si 1.86800 * 119.99799 * 161.86420 * 6 4 3 9 9 H 1.48491 * 109.47434 * 60.00185 * 8 6 4 10 10 H 1.48502 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47054 * 299.99891 * 8 6 4 12 12 C 1.34778 * 119.99548 * 88.83427 * 3 2 1 13 13 O 1.21290 * 119.99423 * 179.97438 * 12 3 2 14 14 C 1.50693 * 120.00320 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47125 * 180.02562 * 14 12 3 16 16 C 1.52999 * 109.47298 * 179.97438 * 15 14 12 17 17 O 1.42893 * 109.47551 * 179.97438 * 16 15 14 18 18 C 1.35663 * 117.00494 * 180.02562 * 17 16 15 19 19 C 1.39079 * 119.88578 * 180.02562 * 18 17 16 20 20 C 1.37122 * 120.11444 * 180.25663 * 19 18 17 21 21 C 1.40045 * 119.88064 * 359.51776 * 20 19 18 22 22 C 1.46859 * 120.11333 * 180.23123 * 21 20 19 23 23 C 1.50698 * 119.99799 * 354.50765 * 22 21 20 24 24 O 1.21293 * 120.00034 * 174.50608 * 22 21 20 25 25 C 1.40040 * 119.76950 * 0.50383 * 21 20 19 26 26 C 1.37118 * 119.88638 * 359.72727 * 25 21 20 27 27 H 1.08996 * 109.46576 * 299.99827 * 1 2 3 28 28 H 1.08996 * 109.47073 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.46689 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47067 * 240.00586 * 2 1 3 31 31 H 1.08996 * 109.47073 * 120.00218 * 2 1 3 32 32 H 0.96995 * 120.00252 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47623 * 59.99987 * 14 12 3 34 34 H 1.09007 * 109.47110 * 299.99654 * 14 12 3 35 35 H 1.08996 * 109.47404 * 59.99966 * 15 14 12 36 36 H 1.09000 * 109.47096 * 299.99954 * 15 14 12 37 37 H 1.09004 * 109.47216 * 60.00026 * 16 15 14 38 38 H 1.09000 * 109.47329 * 300.00203 * 16 15 14 39 39 H 1.07998 * 119.94709 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.05736 * 179.72440 * 20 19 18 41 41 H 1.09000 * 109.47293 * 4.40874 * 23 22 21 42 42 H 1.09001 * 109.47335 * 124.40706 * 23 22 21 43 43 H 1.09003 * 109.47138 * 244.40833 * 23 22 21 44 44 H 1.08003 * 120.05652 * 179.70787 * 25 21 20 45 45 H 1.07999 * 119.93972 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2696 2.0195 -1.1870 5 1 1.9763 3.0505 -1.3184 6 6 2.9019 1.3399 -2.2210 7 7 3.5710 0.2371 -1.9700 8 14 2.8007 1.9939 -3.9678 9 1 3.3893 3.3561 -4.0213 10 1 3.5527 1.0931 -4.8779 11 1 1.3790 2.0518 -4.3931 12 6 2.2205 2.0245 1.1670 13 8 2.6252 3.1679 1.1670 14 6 1.9438 1.3231 2.4718 15 6 2.2523 2.2686 3.6345 16 6 1.9708 1.5567 4.9592 17 8 2.2595 2.4394 6.0451 18 6 2.0622 1.9592 7.2985 19 6 2.3238 2.7677 8.3995 20 6 2.1310 2.2854 9.6685 21 6 1.6603 0.9796 9.8546 22 6 1.4472 0.4595 11.2114 23 6 1.8509 1.2841 12.4064 24 8 0.9462 -0.6337 11.3701 25 6 1.3990 0.1696 8.7425 26 6 1.5996 0.6600 7.4778 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.0121 -0.2376 -2.6918 33 1 2.5724 0.4359 2.5479 34 1 0.8947 1.0297 2.5112 35 1 1.6234 3.1555 3.5583 36 1 3.3012 2.5624 3.5952 37 1 2.5995 0.6695 5.0357 38 1 0.9218 1.2631 4.9982 39 1 2.6836 3.7757 8.2549 40 1 2.3386 2.9125 10.5229 41 1 2.2066 2.2586 12.0720 42 1 0.9913 1.4170 13.0633 43 1 2.6468 0.7732 12.9483 44 1 1.0404 -0.8397 8.8807 45 1 1.3980 0.0362 6.6195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154991788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:19 Heat of formation + Delta-G solvation = -91.079134 kcal Electronic energy + Delta-G solvation = -25426.606654 eV Core-core repulsion = 21602.592873 eV Total energy + Delta-G solvation = -3824.013781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66215 -39.48558 -38.64113 -37.36654 -35.10536 -33.48418 -32.07012 -31.97914 -31.14178 -29.45438 -29.17605 -27.42013 -24.89693 -23.56989 -23.19640 -22.26781 -21.34782 -20.08233 -19.00112 -18.28689 -16.91020 -16.74795 -16.44214 -16.41043 -15.79129 -15.29080 -15.11101 -15.03814 -14.82762 -14.47913 -14.17273 -13.94869 -13.55089 -13.32022 -13.00185 -12.90737 -12.74110 -12.62381 -12.49959 -12.27187 -11.97131 -11.74724 -11.54376 -11.42908 -11.13892 -11.05859 -11.01798 -10.80672 -10.56867 -10.37092 -10.31756 -10.09571 -10.04741 -9.45799 -8.93881 -8.51581 -8.42706 -7.42631 -6.32763 -4.02727 0.42089 1.03963 2.12876 2.91878 3.18984 3.24353 3.27910 3.48013 3.78687 3.90333 4.15405 4.38354 4.46522 4.66713 4.76104 4.85708 4.90775 4.93403 5.00620 5.02953 5.10907 5.17835 5.24556 5.26372 5.48740 5.58195 5.63940 5.67465 5.77912 5.81325 5.89625 5.98585 6.05098 6.07549 6.17976 6.28077 6.33877 6.40121 6.49209 6.55409 6.85367 7.15716 7.19669 7.24604 7.57467 8.29195 8.50588 9.18782 9.38674 10.00827 10.71957 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.001925 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.218642 B =14544.757148 C =15033.624180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.442 5.442 4 C -0.309 4.309 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.463 3.537 13 O -0.580 6.580 14 C -0.132 4.132 15 C -0.099 4.099 16 C 0.057 3.943 17 O -0.305 6.305 18 C 0.174 3.826 19 C -0.170 4.170 20 C -0.033 4.033 21 C -0.225 4.225 22 C 0.400 3.600 23 C -0.202 4.202 24 O -0.470 6.470 25 C -0.016 4.016 26 C -0.226 4.226 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -1.181 21.774 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.161 5.161 4 C -0.437 4.437 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.251 3.749 13 O -0.463 6.463 14 C -0.172 4.172 15 C -0.137 4.137 16 C -0.018 4.018 17 O -0.217 6.217 18 C 0.127 3.873 19 C -0.189 4.189 20 C -0.051 4.051 21 C -0.226 4.226 22 C 0.279 3.721 23 C -0.259 4.259 24 O -0.347 6.347 25 C -0.034 4.034 26 C -0.245 4.245 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.152 0.848 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.053 -1.144 21.635 22.041 hybrid contribution -0.044 -0.108 -1.032 1.039 sum -4.097 -1.252 20.603 21.044 Atomic orbital electron populations 1.22189 0.98184 1.00253 1.01551 1.21492 0.91777 0.85730 1.03428 1.43440 1.56451 1.11826 1.04430 1.19309 1.37292 0.98300 0.88836 0.89572 1.25431 0.94010 0.96591 1.00541 1.69898 1.29838 1.18285 1.33008 0.86132 0.78440 0.78964 0.81960 1.19731 1.20992 1.19900 1.20251 0.81656 0.88005 0.85015 1.90529 1.49723 1.18832 1.87245 1.21516 1.02474 0.99269 0.93982 1.21223 1.04410 0.98947 0.89102 1.23106 1.00604 0.92904 0.85192 1.86083 1.80977 1.42505 1.12102 1.19500 0.90740 0.91816 0.85265 1.20344 1.07240 1.01166 0.90116 1.21173 0.93259 0.93949 0.96721 1.20363 1.10835 0.96466 0.94966 1.22326 0.73893 0.85939 0.89899 1.22240 1.04119 1.01658 0.97879 1.90542 1.34201 1.21184 1.88743 1.21077 0.92091 0.99339 0.90894 1.21225 1.08423 0.95960 0.98865 0.93985 0.92341 0.93176 0.87846 0.93313 0.92229 0.89910 0.90271 0.90271 0.90122 0.91575 0.91652 0.84356 0.84281 0.89810 0.88976 0.88754 0.84759 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 10.22 37.16 0.38 -2.44 16 2 C 0.10 2.08 5.49 -4.03 -0.02 2.06 16 3 N -0.44 -10.93 2.49 -114.81 -0.29 -11.21 16 4 C -0.31 -8.48 8.83 -14.94 -0.13 -8.62 16 5 H 0.09 2.47 7.83 -52.49 -0.41 2.06 16 6 C 0.04 1.01 4.99 -17.47 -0.09 0.93 16 7 N -0.87 -23.38 11.59 55.50 0.64 -22.74 16 8 Si 0.92 20.50 29.59 -169.99 -5.03 15.47 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.46 10.96 7.62 -10.99 -0.08 10.88 16 13 O -0.58 -15.94 15.90 5.55 0.09 -15.85 16 14 C -0.13 -2.24 4.27 -27.89 -0.12 -2.35 16 15 C -0.10 -1.53 4.87 -26.73 -0.13 -1.66 16 16 C 0.06 0.68 4.73 37.16 0.18 0.85 16 17 O -0.30 -3.93 10.12 -18.69 -0.19 -4.11 16 18 C 0.17 1.96 6.70 -38.96 -0.26 1.70 16 19 C -0.17 -1.60 9.95 -39.68 -0.39 -1.99 16 20 C -0.03 -0.26 9.41 -39.31 -0.37 -0.63 16 21 C -0.23 -2.10 5.87 -105.06 -0.62 -2.72 16 22 C 0.40 3.66 7.20 -30.82 -0.22 3.44 16 23 C -0.20 -1.04 10.19 36.00 0.37 -0.67 16 24 O -0.47 -5.94 17.10 5.55 0.09 -5.85 16 25 C -0.02 -0.16 9.57 -39.31 -0.38 -0.54 16 26 C -0.23 -2.33 8.99 -39.68 -0.36 -2.69 16 27 H 0.04 0.67 7.08 -51.93 -0.37 0.30 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.41 5.73 -51.93 -0.30 2.11 16 31 H 0.05 0.90 6.49 -51.93 -0.34 0.56 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.08 1.29 7.40 -51.93 -0.38 0.91 16 34 H 0.08 1.16 7.03 -51.93 -0.36 0.80 16 35 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.07 0.70 7.65 -51.93 -0.40 0.31 16 38 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.14 0.61 5.94 -52.49 -0.31 0.30 16 41 H 0.08 0.26 5.61 -51.93 -0.29 -0.03 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 1.30 7.65 -52.48 -0.40 0.90 16 45 H 0.14 1.23 6.27 -52.49 -0.33 0.90 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -33.25 374.46 -7.66 -40.91 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.38 Total: 2.19 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.25 Total: -4.45 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.36 Total: -33.95 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.01 Total: -25.81 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.25 -7.66 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154991788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.166 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds