Wall clock time and date at job start Tue Mar 31 2020 12:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46722 * 2 1 4 4 C 1.37092 * 119.99885 * 268.82955 * 3 2 1 5 5 H 1.07996 * 119.99888 * 138.25570 * 4 3 2 6 6 C 1.38952 * 120.00242 * 318.24800 * 4 3 2 7 7 N 1.31412 * 120.00039 * 341.86132 * 6 4 3 8 8 Si 1.86800 * 119.99799 * 161.86420 * 6 4 3 9 9 H 1.48491 * 109.47434 * 60.00185 * 8 6 4 10 10 H 1.48502 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47054 * 299.99891 * 8 6 4 12 12 C 1.34778 * 119.99548 * 88.83427 * 3 2 1 13 13 O 1.21290 * 119.99423 * 179.97438 * 12 3 2 14 14 C 1.50693 * 120.00320 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47125 * 180.02562 * 14 12 3 16 16 C 1.52999 * 109.47298 * 179.97438 * 15 14 12 17 17 O 1.42893 * 109.47551 * 179.97438 * 16 15 14 18 18 C 1.35663 * 117.00494 * 180.02562 * 17 16 15 19 19 C 1.39079 * 119.88578 * 180.02562 * 18 17 16 20 20 C 1.37122 * 120.11444 * 180.25663 * 19 18 17 21 21 C 1.40045 * 119.88064 * 359.51776 * 20 19 18 22 22 C 1.46859 * 120.11333 * 180.23123 * 21 20 19 23 23 C 1.50698 * 119.99799 * 354.50765 * 22 21 20 24 24 O 1.21293 * 120.00034 * 174.50608 * 22 21 20 25 25 C 1.40040 * 119.76950 * 0.50383 * 21 20 19 26 26 C 1.37118 * 119.88638 * 359.72727 * 25 21 20 27 27 H 1.08996 * 109.46576 * 299.99827 * 1 2 3 28 28 H 1.08996 * 109.47073 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.46689 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47067 * 240.00586 * 2 1 3 31 31 H 1.08996 * 109.47073 * 120.00218 * 2 1 3 32 32 H 0.96995 * 120.00252 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47623 * 59.99987 * 14 12 3 34 34 H 1.09007 * 109.47110 * 299.99654 * 14 12 3 35 35 H 1.08996 * 109.47404 * 59.99966 * 15 14 12 36 36 H 1.09000 * 109.47096 * 299.99954 * 15 14 12 37 37 H 1.09004 * 109.47216 * 60.00026 * 16 15 14 38 38 H 1.09000 * 109.47329 * 300.00203 * 16 15 14 39 39 H 1.07998 * 119.94709 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.05736 * 179.72440 * 20 19 18 41 41 H 1.09000 * 109.47293 * 4.40874 * 23 22 21 42 42 H 1.09001 * 109.47335 * 124.40706 * 23 22 21 43 43 H 1.09003 * 109.47138 * 244.40833 * 23 22 21 44 44 H 1.08003 * 120.05652 * 179.70787 * 25 21 20 45 45 H 1.07999 * 119.93972 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2696 2.0195 -1.1870 5 1 1.9763 3.0505 -1.3184 6 6 2.9019 1.3399 -2.2210 7 7 3.5710 0.2371 -1.9700 8 14 2.8007 1.9939 -3.9678 9 1 3.3893 3.3561 -4.0213 10 1 3.5527 1.0931 -4.8779 11 1 1.3790 2.0518 -4.3931 12 6 2.2205 2.0245 1.1670 13 8 2.6252 3.1679 1.1670 14 6 1.9438 1.3231 2.4718 15 6 2.2523 2.2686 3.6345 16 6 1.9708 1.5567 4.9592 17 8 2.2595 2.4394 6.0451 18 6 2.0622 1.9592 7.2985 19 6 2.3238 2.7677 8.3995 20 6 2.1310 2.2854 9.6685 21 6 1.6603 0.9796 9.8546 22 6 1.4472 0.4595 11.2114 23 6 1.8509 1.2841 12.4064 24 8 0.9462 -0.6337 11.3701 25 6 1.3990 0.1696 8.7425 26 6 1.5996 0.6600 7.4778 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.0121 -0.2376 -2.6918 33 1 2.5724 0.4359 2.5479 34 1 0.8947 1.0297 2.5112 35 1 1.6234 3.1555 3.5583 36 1 3.3012 2.5624 3.5952 37 1 2.5995 0.6695 5.0357 38 1 0.9218 1.2631 4.9982 39 1 2.6836 3.7757 8.2549 40 1 2.3386 2.9125 10.5229 41 1 2.2066 2.2586 12.0720 42 1 0.9913 1.4170 13.0633 43 1 2.6468 0.7732 12.9483 44 1 1.0404 -0.8397 8.8807 45 1 1.3980 0.0362 6.6195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154991788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:18 Heat of formation + Delta-G solvation = -110.546049 kcal Electronic energy + Delta-G solvation = -25427.450803 eV Core-core repulsion = 21602.592873 eV Total energy + Delta-G solvation = -3824.857930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44104 -40.52963 -40.19037 -38.19288 -36.94790 -34.84742 -33.87200 -32.71266 -31.91553 -31.12109 -29.80609 -28.72104 -26.59721 -24.47314 -24.12147 -23.75878 -22.45531 -20.79440 -20.54748 -19.28995 -18.68877 -17.82957 -17.52163 -17.45628 -17.09291 -16.79378 -16.07737 -15.98480 -15.90213 -15.68098 -15.58474 -14.81635 -14.65869 -14.52091 -14.45099 -14.06945 -13.79002 -13.62751 -13.55967 -13.21936 -13.06819 -12.98365 -12.94271 -12.78896 -12.65172 -12.46672 -12.34059 -12.17773 -12.07449 -11.79338 -11.72351 -11.55224 -10.88356 -10.75852 -10.34579 -10.15068 -9.37298 -9.30420 -8.32869 -6.10679 -0.31145 0.34032 1.39243 1.40480 1.42413 1.50364 2.01825 2.09082 2.31787 2.77018 3.01906 3.13398 3.19272 3.67345 3.79293 3.86722 3.91444 4.07658 4.16246 4.19589 4.27016 4.32759 4.39917 4.42796 4.45027 4.52944 4.65976 4.69079 4.70081 4.78893 4.87473 4.94925 5.05452 5.07639 5.11787 5.21690 5.26565 5.29123 5.34504 5.40097 5.46096 5.58631 5.65809 6.25090 6.32832 6.57566 6.58193 7.20567 7.49561 8.10202 8.69848 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.001925 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.218642 B =14544.757148 C =15033.624180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.097 3.903 3 N -0.456 5.456 4 C -0.342 4.342 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.445 3.555 13 O -0.632 6.632 14 C -0.117 4.117 15 C -0.092 4.092 16 C 0.065 3.935 17 O -0.325 6.325 18 C 0.152 3.848 19 C -0.177 4.177 20 C -0.018 4.018 21 C -0.235 4.235 22 C 0.399 3.601 23 C -0.197 4.197 24 O -0.514 6.514 25 C -0.031 4.031 26 C -0.229 4.229 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.273 0.727 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -1.850 23.460 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 N -0.175 5.175 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.188 1.188 12 C 0.236 3.764 13 O -0.519 6.519 14 C -0.157 4.157 15 C -0.130 4.130 16 C -0.010 4.010 17 O -0.238 6.238 18 C 0.106 3.894 19 C -0.196 4.196 20 C -0.036 4.036 21 C -0.236 4.236 22 C 0.282 3.718 23 C -0.254 4.254 24 O -0.394 6.394 25 C -0.049 4.049 26 C -0.248 4.248 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.168 0.832 40 H 0.196 0.804 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.149 0.851 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.656 -1.841 23.331 23.862 hybrid contribution 0.176 0.122 -1.496 1.511 sum -4.480 -1.720 21.835 22.356 Atomic orbital electron populations 1.22084 0.95295 1.02424 1.01314 1.21629 0.94134 0.83471 1.03358 1.43760 1.56513 1.13154 1.04101 1.19265 1.38906 0.97854 0.90995 0.92390 1.26140 0.93211 0.96776 1.03764 1.69964 1.29835 1.18904 1.34162 0.85217 0.78944 0.77990 0.77526 1.20490 1.19682 1.18777 1.21377 0.80436 0.87663 0.86962 1.90485 1.51854 1.21276 1.88300 1.21426 1.04762 0.99172 0.90308 1.21056 1.02447 0.98502 0.90972 1.22953 1.02252 0.92450 0.83310 1.86029 1.81718 1.43135 1.12882 1.19767 0.92091 0.92636 0.84933 1.20649 1.07021 1.01649 0.90267 1.21527 0.91295 0.93431 0.97321 1.20643 1.10711 0.97179 0.95088 1.22927 0.72402 0.85489 0.90987 1.22287 1.04806 1.02109 0.96174 1.90532 1.36405 1.23183 1.89270 1.21206 0.92675 0.99627 0.91415 1.21321 1.08325 0.95847 0.99304 0.92412 0.94403 0.89709 0.90489 0.90718 0.91795 0.87885 0.87101 0.92031 0.92611 0.89924 0.89502 0.83222 0.80429 0.87251 0.88021 0.87682 0.85057 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 10.22 71.98 0.74 -4.23 16 2 C 0.10 3.95 5.49 86.38 0.47 4.43 16 3 N -0.46 -22.89 2.49 -635.52 -1.58 -24.47 16 4 C -0.34 -19.37 8.83 84.04 0.74 -18.63 16 5 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 6 C 0.00 0.20 4.99 84.93 0.42 0.62 16 7 N -0.89 -48.06 11.59 21.66 0.25 -47.81 16 8 Si 0.98 42.50 29.59 68.60 2.03 44.53 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 12 C 0.45 21.48 7.62 87.65 0.67 22.15 16 13 O -0.63 -36.33 15.90 -3.06 -0.05 -36.37 16 14 C -0.12 -3.80 4.27 29.85 0.13 -3.68 16 15 C -0.09 -2.81 4.87 30.59 0.15 -2.67 16 16 C 0.06 1.44 4.73 71.98 0.34 1.78 16 17 O -0.32 -8.08 10.12 -89.80 -0.91 -8.99 16 18 C 0.15 3.23 6.70 22.67 0.15 3.38 16 19 C -0.18 -2.99 9.95 22.21 0.22 -2.76 16 20 C -0.02 -0.23 9.41 22.45 0.21 -0.02 16 21 C -0.24 -3.99 5.87 -20.15 -0.12 -4.11 16 22 C 0.40 6.66 7.20 27.94 0.20 6.87 16 23 C -0.20 -1.41 10.19 71.24 0.73 -0.68 16 24 O -0.51 -12.82 17.10 -3.07 -0.05 -12.87 16 25 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 26 C -0.23 -4.43 8.99 22.21 0.20 -4.24 16 27 H 0.06 1.68 7.08 -2.39 -0.02 1.66 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 3.57 5.73 -2.38 -0.01 3.56 16 31 H 0.07 2.59 6.49 -2.39 -0.02 2.57 16 32 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.10 2.97 7.40 -2.39 -0.02 2.95 16 34 H 0.11 2.92 7.03 -2.38 -0.02 2.91 16 35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.08 1.57 7.65 -2.39 -0.02 1.55 16 38 H 0.09 1.57 7.65 -2.39 -0.02 1.55 16 39 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.18 0.75 5.94 -2.91 -0.02 0.73 16 41 H 0.11 0.18 5.61 -2.39 -0.01 0.17 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.13 2.55 7.65 -2.91 -0.02 2.52 16 45 H 0.15 2.38 6.27 -2.91 -0.02 2.36 16 Total: -1.00 -76.85 374.46 6.16 -70.70 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.00 Total: 17.46 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.47 Total: -2.17 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.33 Total: -72.28 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.01 Total: -58.23 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.85 6.16 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154991788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.850 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds