Wall clock time and date at job start Tue Mar 31 2020 12:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21253 * 120.00300 * 2 1 4 4 C 1.47181 * 119.99985 * 180.02562 * 2 1 3 5 5 C 1.39876 * 120.14425 * 359.97438 * 4 2 1 6 6 C 1.37899 * 119.93675 * 180.02562 * 5 4 2 7 7 C 1.38333 * 120.23359 * 359.97438 * 6 5 4 8 8 C 1.38849 * 120.29635 * 0.02644 * 7 6 5 9 9 O 1.35907 * 119.97182 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00021 * 5.36697 * 9 8 7 11 11 H 1.08999 * 109.47040 * 35.24679 * 10 9 8 12 12 C 1.52996 * 109.47533 * 275.24426 * 10 9 8 13 13 C 1.50706 * 109.47369 * 155.24136 * 10 9 8 14 14 O 1.21283 * 119.99421 * 5.00096 * 13 10 9 15 15 N 1.34772 * 120.00080 * 185.00671 * 13 10 9 16 16 C 1.46499 * 119.99749 * 179.97438 * 15 13 10 17 17 C 1.53002 * 109.47194 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47221 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.46874 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00573 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99871 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47044 * 90.00255 * 23 21 19 25 25 H 1.48504 * 109.46573 * 209.99939 * 23 21 19 26 26 H 1.48495 * 109.47306 * 329.99730 * 23 21 19 27 27 C 1.38425 * 120.05698 * 0.24899 * 8 7 6 28 28 H 1.08994 * 109.47067 * 239.99799 * 1 2 3 29 29 H 1.09003 * 109.46766 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47167 * 119.99610 * 1 2 3 31 31 H 1.08002 * 120.03400 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.88347 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.84887 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.47330 * 179.97438 * 12 10 9 35 35 H 1.08992 * 109.47155 * 59.99506 * 12 10 9 36 36 H 1.09002 * 109.46764 * 299.99864 * 12 10 9 37 37 H 0.97000 * 120.00127 * 359.97438 * 15 13 10 38 38 H 1.09003 * 109.47602 * 299.99667 * 16 15 13 39 39 H 1.09002 * 109.47101 * 59.99541 * 16 15 13 40 40 H 1.08996 * 109.47129 * 300.00146 * 17 16 15 41 41 H 1.09002 * 109.47035 * 60.00034 * 17 16 15 42 42 H 1.08996 * 109.47263 * 300.00155 * 18 17 16 43 43 H 1.09002 * 109.47013 * 60.00112 * 18 17 16 44 44 H 0.96995 * 119.99669 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.11744 * 179.72882 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5466 -2.4878 -0.0006 6 6 2.2404 -3.6795 -0.0006 7 6 3.6237 -3.6801 -0.0011 8 6 4.3247 -2.4816 -0.0011 9 8 5.6838 -2.4899 -0.0011 10 6 6.3248 -3.7615 -0.1202 11 1 5.7380 -4.4041 -0.7766 12 6 6.4349 -4.4086 1.2618 13 6 7.7036 -3.5768 -0.6997 14 8 8.1333 -2.4601 -0.8982 15 7 8.4591 -4.6524 -0.9974 16 6 9.7993 -4.4727 -1.5613 17 6 10.4380 -5.8416 -1.8045 18 6 11.8374 -5.6540 -2.3939 19 6 12.4662 -7.0023 -2.6340 20 1 11.9224 -7.9029 -2.3901 21 6 13.7363 -7.0861 -3.1640 22 7 14.3992 -5.9894 -3.4596 23 14 14.5155 -8.7575 -3.4623 24 1 14.1816 -9.2218 -4.8327 25 1 15.9898 -8.6483 -3.3220 26 1 13.9945 -9.7308 -2.4691 27 6 3.6406 -1.2782 0.0047 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.4666 -2.4911 -0.0006 32 1 1.7019 -4.6156 -0.0002 33 1 4.1609 -4.6171 -0.0007 34 1 6.9234 -5.3788 1.1708 35 1 5.4377 -4.5422 1.6809 36 1 7.0218 -3.7660 1.9181 37 1 8.1155 -5.5454 -0.8384 38 1 9.7270 -3.9324 -2.5052 39 1 10.4139 -3.9041 -0.8634 40 1 10.5104 -6.3816 -0.8604 41 1 9.8235 -6.4105 -2.5022 42 1 11.7646 -5.1142 -3.3380 43 1 12.4521 -5.0850 -1.6965 44 1 15.2928 -6.0484 -3.8322 45 1 4.1849 -0.3454 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171500480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:22 Heat of formation + Delta-G solvation = -100.759012 kcal Electronic energy + Delta-G solvation = -25133.560778 eV Core-core repulsion = 21309.127247 eV Total energy + Delta-G solvation = -3824.433532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03363 -40.00626 -39.07016 -37.40547 -35.47594 -33.54913 -32.64132 -32.13215 -31.21053 -30.52071 -29.36673 -26.93278 -25.09853 -24.23720 -23.01701 -22.63201 -20.90561 -20.56446 -19.71766 -18.49863 -17.50557 -16.75184 -16.39696 -16.31443 -16.07386 -15.64719 -15.50753 -15.40599 -15.05189 -14.78375 -14.47143 -14.16437 -14.06266 -13.74888 -13.56900 -12.94961 -12.88810 -12.82828 -12.59209 -12.33968 -12.29788 -12.11103 -11.89328 -11.80703 -11.47789 -11.31453 -10.93782 -10.79474 -10.63397 -10.22266 -9.92858 -9.92274 -9.50029 -9.42988 -9.16383 -8.92262 -8.66204 -8.40616 -6.05053 -4.08566 0.18497 0.96511 1.97344 2.37895 2.55252 3.28303 3.33771 3.34740 3.36573 3.39196 3.70300 4.22565 4.36659 4.40696 4.42684 4.51900 4.54322 4.61298 4.70949 4.75701 4.91470 4.95468 5.08590 5.18793 5.22283 5.30736 5.47721 5.47881 5.62224 5.68304 5.70040 5.80499 5.86340 5.88298 6.08290 6.17631 6.34114 6.52266 6.72532 6.93072 6.96989 7.08809 7.52727 7.59303 7.71210 7.93093 8.20400 8.33960 8.98005 9.55827 11.06145 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.001754 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.150037 B =15955.904322 C =16359.540580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.451 6.451 4 C -0.134 4.134 5 C -0.114 4.114 6 C -0.091 4.091 7 C -0.183 4.183 8 C 0.124 3.876 9 O -0.281 6.281 10 C 0.065 3.935 11 H 0.098 0.902 12 C -0.177 4.177 13 C 0.512 3.488 14 O -0.518 6.518 15 N -0.720 5.720 16 C 0.117 3.883 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.092 4.092 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.017 3.322 9.728 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.271 3.729 3 O -0.326 6.326 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.109 4.109 7 C -0.202 4.202 8 C 0.078 3.922 9 O -0.193 6.193 10 C 0.005 3.995 11 H 0.116 0.884 12 C -0.234 4.234 13 C 0.295 3.705 14 O -0.392 6.392 15 N -0.373 5.373 16 C -0.005 4.005 17 C -0.158 4.158 18 C -0.015 4.015 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.111 4.111 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -30.046 4.945 9.522 31.905 hybrid contribution 0.327 -1.762 -0.171 1.800 sum -29.719 3.183 9.352 31.318 Atomic orbital electron populations 1.22238 0.93309 1.05320 1.04640 1.22530 0.91782 0.87396 0.71172 1.90576 1.72181 1.34250 1.35574 1.20303 0.93263 0.95161 1.04819 1.21322 1.00177 0.91246 1.00491 1.20927 0.93271 0.98391 0.98310 1.21607 0.95660 0.97413 1.05480 1.18949 0.82775 0.93928 0.96526 1.86267 1.15576 1.30182 1.87308 1.22293 0.93170 0.85043 0.98973 0.88398 1.22349 1.04067 1.01747 0.95256 1.19964 0.86020 0.85541 0.78988 1.90763 1.72612 1.24040 1.51834 1.46085 1.17999 1.08243 1.64925 1.21720 0.80270 1.00085 0.98437 1.21899 0.99932 0.93166 1.00834 1.19037 0.88801 0.97446 0.96171 1.21188 1.00310 0.92498 1.42237 0.92634 1.25036 0.97288 0.96557 0.95571 1.69964 1.12501 1.27157 1.43521 0.86573 0.78495 0.84236 0.78556 1.20654 1.21183 1.19909 1.20700 0.92808 0.97261 1.00289 0.88698 0.89569 0.88666 0.84825 0.84911 0.84623 0.89861 0.90717 0.90390 0.76732 0.91512 0.91482 0.92619 0.92650 0.96222 0.96197 0.92887 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.81 8.93 36.01 0.32 -0.49 16 2 C 0.39 3.36 7.23 -30.68 -0.22 3.14 16 3 O -0.45 -5.67 17.08 5.58 0.10 -5.57 16 4 C -0.13 -1.16 5.87 -105.08 -0.62 -1.78 16 5 C -0.11 -0.68 9.47 -39.09 -0.37 -1.05 16 6 C -0.09 -0.54 10.02 -39.67 -0.40 -0.93 16 7 C -0.18 -1.40 8.23 -39.32 -0.32 -1.72 16 8 C 0.12 1.33 6.59 -39.29 -0.26 1.07 16 9 O -0.28 -3.65 9.33 -39.31 -0.37 -4.01 16 10 C 0.07 0.68 2.64 -27.88 -0.07 0.61 16 11 H 0.10 0.75 6.31 -51.93 -0.33 0.43 16 12 C -0.18 -1.38 9.12 37.16 0.34 -1.04 16 13 C 0.51 7.43 7.18 -10.98 -0.08 7.35 16 14 O -0.52 -10.13 16.51 -14.31 -0.24 -10.37 16 15 N -0.72 -9.52 5.52 -60.29 -0.33 -9.85 16 16 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 17 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 18 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 19 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 23 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.09 -1.01 9.54 -38.94 -0.37 -1.38 16 28 H 0.09 0.21 8.09 -51.93 -0.42 -0.21 16 29 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.09 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.13 0.37 7.05 -52.49 -0.37 0.00 16 32 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.76 5.40 -52.48 -0.28 0.48 16 34 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 35 H 0.07 0.46 6.89 -51.93 -0.36 0.10 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.88 8.26 -40.82 -0.34 3.55 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -35.93 382.74 -8.80 -44.72 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.67 Total: -1.66 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.77 Total: -9.40 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.40 Total: -35.66 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.51 Total: -19.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.93 -8.80 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.038 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds