Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21253 * 120.00300 * 2 1 4 4 C 1.47181 * 119.99985 * 180.02562 * 2 1 3 5 5 C 1.39876 * 120.14425 * 359.97438 * 4 2 1 6 6 C 1.37899 * 119.93675 * 180.02562 * 5 4 2 7 7 C 1.38333 * 120.23359 * 359.97438 * 6 5 4 8 8 C 1.38849 * 120.29635 * 0.02644 * 7 6 5 9 9 O 1.35907 * 119.97182 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00021 * 5.36697 * 9 8 7 11 11 H 1.08999 * 109.47040 * 35.24679 * 10 9 8 12 12 C 1.52996 * 109.47533 * 275.24426 * 10 9 8 13 13 C 1.50706 * 109.47369 * 155.24136 * 10 9 8 14 14 O 1.21283 * 119.99421 * 5.00096 * 13 10 9 15 15 N 1.34772 * 120.00080 * 185.00671 * 13 10 9 16 16 C 1.46499 * 119.99749 * 179.97438 * 15 13 10 17 17 C 1.53002 * 109.47194 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47221 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.46874 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00573 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99871 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47044 * 90.00255 * 23 21 19 25 25 H 1.48504 * 109.46573 * 209.99939 * 23 21 19 26 26 H 1.48495 * 109.47306 * 329.99730 * 23 21 19 27 27 C 1.38425 * 120.05698 * 0.24899 * 8 7 6 28 28 H 1.08994 * 109.47067 * 239.99799 * 1 2 3 29 29 H 1.09003 * 109.46766 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47167 * 119.99610 * 1 2 3 31 31 H 1.08002 * 120.03400 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.88347 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.84887 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.47330 * 179.97438 * 12 10 9 35 35 H 1.08992 * 109.47155 * 59.99506 * 12 10 9 36 36 H 1.09002 * 109.46764 * 299.99864 * 12 10 9 37 37 H 0.97000 * 120.00127 * 359.97438 * 15 13 10 38 38 H 1.09003 * 109.47602 * 299.99667 * 16 15 13 39 39 H 1.09002 * 109.47101 * 59.99541 * 16 15 13 40 40 H 1.08996 * 109.47129 * 300.00146 * 17 16 15 41 41 H 1.09002 * 109.47035 * 60.00034 * 17 16 15 42 42 H 1.08996 * 109.47263 * 300.00155 * 18 17 16 43 43 H 1.09002 * 109.47013 * 60.00112 * 18 17 16 44 44 H 0.96995 * 119.99669 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.11744 * 179.72882 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5466 -2.4878 -0.0006 6 6 2.2404 -3.6795 -0.0006 7 6 3.6237 -3.6801 -0.0011 8 6 4.3247 -2.4816 -0.0011 9 8 5.6838 -2.4899 -0.0011 10 6 6.3248 -3.7615 -0.1202 11 1 5.7380 -4.4041 -0.7766 12 6 6.4349 -4.4086 1.2618 13 6 7.7036 -3.5768 -0.6997 14 8 8.1333 -2.4601 -0.8982 15 7 8.4591 -4.6524 -0.9974 16 6 9.7993 -4.4727 -1.5613 17 6 10.4380 -5.8416 -1.8045 18 6 11.8374 -5.6540 -2.3939 19 6 12.4662 -7.0023 -2.6340 20 1 11.9224 -7.9029 -2.3901 21 6 13.7363 -7.0861 -3.1640 22 7 14.3992 -5.9894 -3.4596 23 14 14.5155 -8.7575 -3.4623 24 1 14.1816 -9.2218 -4.8327 25 1 15.9898 -8.6483 -3.3220 26 1 13.9945 -9.7308 -2.4691 27 6 3.6406 -1.2782 0.0047 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.4666 -2.4911 -0.0006 32 1 1.7019 -4.6156 -0.0002 33 1 4.1609 -4.6171 -0.0007 34 1 6.9234 -5.3788 1.1708 35 1 5.4377 -4.5422 1.6809 36 1 7.0218 -3.7660 1.9181 37 1 8.1155 -5.5454 -0.8384 38 1 9.7270 -3.9324 -2.5052 39 1 10.4139 -3.9041 -0.8634 40 1 10.5104 -6.3816 -0.8604 41 1 9.8235 -6.4105 -2.5022 42 1 11.7646 -5.1142 -3.3380 43 1 12.4521 -5.0850 -1.6965 44 1 15.2928 -6.0484 -3.8322 45 1 4.1849 -0.3454 0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171500480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = -124.533555 kcal Electronic energy + Delta-G solvation = -25134.591720 eV Core-core repulsion = 21309.127247 eV Total energy + Delta-G solvation = -3825.464473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82693 -40.88272 -40.01669 -38.14699 -36.98711 -35.29246 -33.78816 -32.71838 -32.60303 -31.27261 -29.86191 -28.64843 -26.05643 -25.17576 -24.32979 -23.32758 -22.36762 -21.69471 -20.63769 -19.20526 -18.69097 -18.27888 -17.49966 -17.08945 -16.90753 -16.64435 -16.49596 -16.36862 -16.28810 -15.97351 -15.61303 -15.30201 -14.83292 -14.70869 -14.34708 -14.26567 -13.79875 -13.75498 -13.47215 -13.40097 -13.19477 -13.04091 -12.94696 -12.75605 -12.63852 -12.55544 -12.39080 -12.16907 -12.01517 -11.68459 -11.58422 -11.24698 -10.88429 -10.86005 -10.55598 -10.22291 -10.09828 -9.32550 -8.19470 -6.31221 -0.42994 0.36812 1.36585 1.41084 1.42168 1.43645 1.49626 1.54743 2.40570 2.48068 2.75312 3.12035 3.14579 3.44671 3.65623 3.79631 3.82112 3.95790 4.05260 4.12961 4.18949 4.21441 4.32852 4.41055 4.52520 4.59588 4.63515 4.70780 4.75045 4.86783 4.92178 4.93414 5.08352 5.13505 5.16519 5.24816 5.29894 5.33541 5.37715 5.51716 5.66546 5.69857 5.83927 6.20719 6.24892 6.47882 6.49343 6.86747 7.10950 7.38684 8.92597 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.001754 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.150037 B =15955.904322 C =16359.540580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.390 3.610 3 O -0.510 6.510 4 C -0.150 4.150 5 C -0.094 4.094 6 C -0.083 4.083 7 C -0.176 4.176 8 C 0.098 3.902 9 O -0.321 6.321 10 C 0.071 3.929 11 H 0.134 0.866 12 C -0.171 4.171 13 C 0.507 3.493 14 O -0.579 6.579 15 N -0.701 5.701 16 C 0.129 3.871 17 C -0.100 4.100 18 C 0.021 3.979 19 C -0.540 4.540 20 H 0.070 0.930 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.287 1.287 26 H -0.258 1.258 27 C -0.129 4.129 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.421 0.579 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.072 0.928 42 H -0.010 1.010 43 H -0.009 1.009 44 H 0.262 0.738 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.854 -1.099 10.428 36.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.272 3.728 3 O -0.389 6.389 4 C -0.151 4.151 5 C -0.112 4.112 6 C -0.101 4.101 7 C -0.195 4.195 8 C 0.053 3.947 9 O -0.235 6.235 10 C 0.012 3.988 11 H 0.152 0.848 12 C -0.228 4.228 13 C 0.293 3.707 14 O -0.458 6.458 15 N -0.355 5.355 16 C 0.005 3.995 17 C -0.137 4.137 18 C -0.017 4.017 19 C -0.578 4.578 20 H 0.088 0.912 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.182 1.182 27 C -0.148 4.148 28 H 0.142 0.858 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.179 0.821 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.071 0.929 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -33.939 0.457 10.242 35.454 hybrid contribution 1.457 -0.367 -0.392 1.553 sum -32.481 0.091 9.850 33.942 Atomic orbital electron populations 1.22290 0.89175 1.06025 1.07162 1.23359 0.93988 0.86540 0.68950 1.90560 1.73677 1.36038 1.38647 1.20516 0.92254 0.96746 1.05542 1.21822 1.02193 0.89806 0.97408 1.21479 0.92566 0.99992 0.96060 1.21938 0.96742 0.96782 1.04004 1.19120 0.81944 0.95026 0.98578 1.86211 1.17300 1.31840 1.88112 1.22388 0.90444 0.85013 1.00938 0.84832 1.22382 1.05444 1.02016 0.92984 1.20839 0.87561 0.84550 0.77768 1.90738 1.74239 1.26490 1.54366 1.45765 1.16377 1.09395 1.63988 1.21288 0.82037 0.98735 0.97428 1.21594 0.96413 0.94182 1.01561 1.18970 0.92197 0.96037 0.94509 1.21690 1.00728 0.93712 1.41679 0.91205 1.26052 0.98132 1.00723 0.95340 1.70121 1.12939 1.29860 1.44706 0.85396 0.77154 0.79250 0.78919 1.19865 1.21261 1.18203 1.20680 0.94387 0.96452 1.03265 0.85753 0.90033 0.85905 0.80557 0.80693 0.82077 0.87272 0.88371 0.92581 0.74097 0.93340 0.93273 0.90824 0.90887 0.99119 0.99070 0.92891 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.06 8.93 71.24 0.64 -0.43 16 2 C 0.39 6.74 7.23 28.04 0.20 6.94 16 3 O -0.51 -14.20 17.08 -2.94 -0.05 -14.25 16 4 C -0.15 -2.51 5.87 -20.16 -0.12 -2.63 16 5 C -0.09 -0.73 9.47 22.59 0.21 -0.52 16 6 C -0.08 -0.56 10.02 22.21 0.22 -0.34 16 7 C -0.18 -2.11 8.23 22.44 0.18 -1.92 16 8 C 0.10 2.11 6.59 22.46 0.15 2.26 16 9 O -0.32 -8.72 9.33 -73.52 -0.69 -9.41 16 10 C 0.07 1.41 2.64 29.85 0.08 1.49 16 11 H 0.13 1.62 6.31 -2.39 -0.02 1.60 16 12 C -0.17 -2.26 9.12 71.98 0.66 -1.60 16 13 C 0.51 14.88 7.18 87.66 0.63 15.51 16 14 O -0.58 -24.18 16.51 15.95 0.26 -23.92 16 15 N -0.70 -17.85 5.52 -463.05 -2.55 -20.41 16 16 C 0.13 4.45 5.67 86.38 0.49 4.94 16 17 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 18 C 0.02 1.06 4.97 29.85 0.15 1.20 16 19 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 20 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 21 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 22 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 23 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 C -0.13 -3.11 9.54 22.68 0.22 -2.89 16 28 H 0.12 0.01 8.09 -2.39 -0.02 -0.01 16 29 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 30 H 0.12 0.06 8.09 -2.39 -0.02 0.04 16 31 H 0.18 -0.16 7.05 -2.91 -0.02 -0.18 16 32 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 33 H 0.16 0.99 5.40 -2.91 -0.02 0.98 16 34 H 0.11 0.86 7.92 -2.38 -0.02 0.84 16 35 H 0.10 0.86 6.89 -2.39 -0.02 0.85 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.42 6.91 8.26 -92.71 -0.77 6.15 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.10 3.17 7.65 -2.91 -0.02 3.15 16 Total: -1.00 -87.42 382.74 4.08 -83.33 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.24 Total: 6.86 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.57 Total: -10.65 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.27 Total: -77.20 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.47 Total: -47.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -87.42 4.08 -83.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.202 kcal (2) G-P(sol) polarization free energy of solvation -87.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds