Wall clock time and date at job start Tue Mar 31 2020 12:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46915 * 2 1 4 4 C 1.42904 * 114.00023 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47258 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.88850 * 302.57745 * 5 4 3 7 7 C 1.55157 * 111.03589 * 178.66759 * 5 4 3 8 8 C 1.54313 * 102.86329 * 206.21678 * 7 5 4 9 9 N 1.47020 * 107.27481 * 22.52979 * 8 7 5 10 10 C 1.34783 * 125.64734 * 180.96772 * 9 8 7 11 11 O 1.21592 * 119.99994 * 174.53453 * 10 9 8 12 12 C 1.47530 * 119.99984 * 354.53816 * 10 9 8 13 13 C 1.39664 * 120.19528 * 315.02342 * 12 10 9 14 14 C 1.37826 * 119.91918 * 179.97438 * 13 12 10 15 15 C 1.38572 * 120.32409 * 0.02562 * 14 13 12 16 16 C 1.38023 * 120.40008 * 359.67491 * 15 14 13 17 17 C 1.38838 * 120.07052 * 0.60092 * 16 15 14 18 18 O 1.35524 * 120.16012 * 179.70428 * 17 16 15 19 19 C 1.34810 * 117.00139 * 5.19110 * 18 17 16 20 20 H 1.08000 * 120.00156 * 354.92291 * 19 18 17 21 21 C 1.38695 * 120.00266 * 174.63933 * 19 18 17 22 22 N 1.31515 * 120.00503 * 180.27701 * 21 19 18 23 23 Si 1.86805 * 119.99748 * 0.28217 * 21 19 18 24 24 H 1.48509 * 109.47081 * 89.99528 * 23 21 19 25 25 H 1.48493 * 109.47114 * 209.99681 * 23 21 19 26 26 H 1.48498 * 109.47093 * 330.00114 * 23 21 19 27 27 C 1.47422 * 108.70442 * 0.70169 * 9 8 7 28 28 H 1.09002 * 109.47514 * 300.00184 * 1 2 3 29 29 H 1.09005 * 109.47219 * 59.99751 * 1 2 3 30 30 H 1.09000 * 109.47615 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46931 * 239.99657 * 2 1 3 32 32 H 1.08995 * 109.46912 * 119.99811 * 2 1 3 33 33 H 1.09000 * 109.46868 * 59.99722 * 4 3 2 34 34 H 1.08993 * 109.46773 * 300.00436 * 4 3 2 35 35 H 1.09000 * 110.71995 * 324.77978 * 7 5 4 36 36 H 1.09001 * 110.71565 * 88.04915 * 7 5 4 37 37 H 1.09001 * 109.98693 * 263.04998 * 8 7 5 38 38 H 1.08999 * 109.77271 * 141.88761 * 8 7 5 39 39 H 1.08006 * 120.04263 * 359.97438 * 13 12 10 40 40 H 1.08005 * 119.84363 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.80106 * 179.97438 * 15 14 13 42 42 H 1.08006 * 119.96715 * 180.30453 * 16 15 14 43 43 H 0.97001 * 120.00101 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.36549 * 94.94094 * 27 9 8 45 45 H 1.09008 * 110.36960 * 217.26278 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3962 3.4548 -0.8587 7 6 5.3678 3.1033 0.0342 8 6 5.5509 4.4861 0.6940 9 7 4.3297 4.7683 1.4625 10 6 4.0887 5.8895 2.1707 11 8 3.0018 6.0598 2.6884 12 6 5.1438 6.9102 2.3176 13 6 6.4515 6.5293 2.6266 14 6 7.4328 7.4876 2.7620 15 6 7.1287 8.8290 2.5936 16 6 5.8422 9.2198 2.2820 17 6 4.8396 8.2689 2.1474 18 8 3.5745 8.6510 1.8473 19 6 3.3758 9.9586 1.5862 20 1 4.1874 10.6617 1.7013 21 6 2.1306 10.4001 1.1639 22 7 1.9382 11.6748 0.9039 23 14 0.7267 9.1839 0.9647 24 1 -0.0206 9.0767 2.2436 25 1 -0.1886 9.6555 -0.1053 26 1 1.2732 7.8528 0.5978 27 6 3.4098 3.6246 1.3251 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9767 0.8907 35 1 5.8260 2.3200 0.6380 36 1 5.7781 3.1030 -0.9757 37 1 5.6914 5.2488 -0.0719 38 1 6.4123 4.4650 1.3615 39 1 6.6935 5.4851 2.7593 40 1 8.4436 7.1917 3.0014 41 1 7.9042 9.5729 2.7021 42 1 5.6141 10.2669 2.1475 43 1 1.0672 11.9835 0.6089 44 1 3.5311 2.9374 2.1625 45 1 2.3784 3.9723 1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175516125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:55 Heat of formation + Delta-G solvation = -77.814851 kcal Electronic energy + Delta-G solvation = -26950.701652 eV Core-core repulsion = 23127.263054 eV Total energy + Delta-G solvation = -3823.438598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.11176 -39.05170 -38.12233 -36.79637 -36.50850 -32.79259 -32.45318 -31.23508 -30.39016 -29.23952 -29.11530 -26.04837 -25.22756 -23.60011 -23.04090 -22.13051 -21.39774 -20.51061 -19.37060 -17.97180 -17.53397 -16.93834 -16.53890 -16.45659 -15.90688 -15.24163 -14.92433 -14.59591 -14.39785 -14.16805 -13.84492 -13.68125 -13.61471 -13.45111 -13.14143 -12.78834 -12.63772 -12.42641 -12.37847 -12.17161 -12.07253 -11.72193 -11.48856 -11.46412 -11.30576 -11.17209 -10.96031 -10.85118 -10.75343 -10.68309 -10.15946 -9.84088 -9.61209 -9.17474 -8.89731 -8.41609 -8.25672 -7.48284 -6.46755 -4.12709 1.68048 2.18473 3.21954 3.29023 3.35681 3.38336 3.47022 3.56101 4.29954 4.38574 4.41946 4.49988 4.67261 4.71883 4.76928 4.92451 5.02772 5.07307 5.07516 5.09508 5.20382 5.23780 5.36009 5.40646 5.45454 5.49464 5.61702 5.65481 5.66067 5.75007 5.87356 5.87555 5.93530 6.07117 6.08473 6.12674 6.37439 6.51760 6.65781 6.88235 6.97117 7.02492 7.16221 7.48615 7.68540 7.89902 7.95622 8.75696 8.88506 9.50088 10.59075 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.004116 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.687439 B = 6801.659402 C = 8849.378966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.077 3.923 5 C -0.103 4.103 6 H 0.094 0.906 7 C -0.123 4.123 8 C 0.103 3.897 9 N -0.626 5.626 10 C 0.590 3.410 11 O -0.523 6.523 12 C -0.215 4.215 13 C -0.044 4.044 14 C -0.217 4.217 15 C -0.055 4.055 16 C -0.224 4.224 17 C 0.199 3.801 18 O -0.186 6.186 19 C -0.394 4.394 20 H 0.110 0.890 21 C 0.071 3.929 22 N -0.871 5.871 23 Si 0.903 3.097 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.119 3.881 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.282 0.718 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -21.569 -3.123 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.305 6.305 4 C 0.000 4.000 5 C -0.122 4.122 6 H 0.112 0.888 7 C -0.161 4.161 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.380 3.620 11 O -0.399 6.399 12 C -0.219 4.219 13 C -0.063 4.063 14 C -0.236 4.236 15 C -0.073 4.073 16 C -0.243 4.243 17 C 0.143 3.857 18 O -0.088 6.088 19 C -0.469 4.469 20 H 0.127 0.873 21 C -0.134 4.134 22 N -0.507 5.507 23 Si 0.728 3.272 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.004 4.004 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.500 -21.150 -2.879 22.313 hybrid contribution -0.309 -0.449 -0.129 0.560 sum 6.191 -21.599 -3.008 22.670 Atomic orbital electron populations 1.21752 0.93728 1.02107 1.03441 1.22440 0.95721 0.83848 0.99838 1.87952 1.20928 1.26269 1.95374 1.22397 0.81534 0.95846 1.00271 1.22374 0.95774 0.94587 0.99454 0.88796 1.22649 0.94764 0.96961 1.01734 1.22072 0.88242 0.96334 0.95392 1.48374 1.18637 1.17984 1.51267 1.17881 0.87238 0.79511 0.77326 1.90783 1.24834 1.76554 1.47687 1.18720 0.94098 0.90631 1.18478 1.20786 0.90656 0.98591 0.96247 1.20547 0.98654 0.93069 1.11281 1.20951 0.95597 0.95634 0.95133 1.21260 0.93029 1.00590 1.09411 1.18964 0.84644 0.91002 0.91135 1.83657 1.22491 1.28673 1.73954 1.20858 0.99986 0.79836 1.46213 0.87320 1.24460 0.97925 0.96293 0.94696 1.69627 1.25043 1.13551 1.42488 0.86182 0.80663 0.81875 0.78459 1.19549 1.20914 1.17805 1.22083 0.95416 0.87266 0.95603 0.91654 0.91793 0.91221 0.93568 0.93485 0.92906 0.93015 0.90410 0.89759 0.91097 0.90994 0.86449 0.86961 0.86812 0.84383 0.90833 0.91948 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.40 10.20 -35.23 -0.36 -4.76 16 4 C 0.08 0.70 5.38 37.16 0.20 0.90 16 5 C -0.10 -1.13 3.32 -88.47 -0.29 -1.42 16 6 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.12 -1.08 6.42 -24.90 -0.16 -1.24 16 8 C 0.10 1.26 5.92 -3.07 -0.02 1.25 16 9 N -0.63 -10.56 3.33 -171.75 -0.57 -11.13 16 10 C 0.59 12.85 7.16 -12.47 -0.09 12.76 16 11 O -0.52 -13.69 16.59 -7.44 -0.12 -13.82 16 12 C -0.21 -4.53 5.39 -104.82 -0.56 -5.10 16 13 C -0.04 -0.74 8.42 -39.20 -0.33 -1.07 16 14 C -0.22 -3.40 10.02 -39.61 -0.40 -3.80 16 15 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 16 C -0.22 -4.78 9.16 -39.44 -0.36 -5.14 16 17 C 0.20 4.79 6.63 -38.60 -0.26 4.53 16 18 O -0.19 -5.22 7.51 -11.92 -0.09 -5.31 16 19 C -0.39 -11.39 9.95 30.90 0.31 -11.08 16 20 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 21 C 0.07 2.07 5.49 -17.52 -0.10 1.97 16 22 N -0.87 -25.48 13.96 55.48 0.77 -24.71 16 23 Si 0.90 23.59 28.62 -169.99 -4.86 18.73 16 24 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.25 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.12 1.75 6.26 -2.53 -0.02 1.74 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.78 5.75 -51.93 -0.30 0.48 16 39 H 0.12 1.60 6.19 -52.48 -0.33 1.27 16 40 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.14 3.05 5.63 -52.48 -0.30 2.76 16 43 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 45 H 0.08 1.42 7.99 -51.92 -0.41 1.01 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -34.42 370.89 -8.15 -42.57 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.66 Total: -0.04 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.84 Total: -7.12 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.20 Total: -35.83 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.57 Total: -23.89 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.86 Total: 18.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.42 -8.15 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175516125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.245 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds