Wall clock time and date at job start Tue Mar 31 2020 12:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46918 * 2 1 4 4 C 1.42902 * 113.99972 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47250 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.88217 * 57.42367 * 5 4 3 7 7 C 1.55152 * 111.00593 * 181.34524 * 5 4 3 8 8 C 1.54322 * 102.94262 * 153.57555 * 7 5 4 9 9 N 1.47023 * 107.27030 * 337.80994 * 8 7 5 10 10 C 1.34781 * 125.64537 * 178.90016 * 9 8 7 11 11 O 1.21596 * 119.99632 * 176.41297 * 10 9 8 12 12 C 1.47532 * 120.00030 * 356.41821 * 10 9 8 13 13 C 1.39657 * 120.19980 * 46.12732 * 12 10 9 14 14 C 1.37831 * 119.92081 * 179.71466 * 13 12 10 15 15 C 1.38578 * 120.31947 * 0.56457 * 14 13 12 16 16 C 1.38020 * 120.40316 * 359.71414 * 15 14 13 17 17 C 1.38834 * 120.07172 * 359.97438 * 16 15 14 18 18 O 1.35526 * 120.16101 * 180.02562 * 17 16 15 19 19 C 1.34809 * 116.99806 * 6.17500 * 18 17 16 20 20 H 1.08001 * 120.00276 * 5.26181 * 19 18 17 21 21 C 1.38700 * 119.99670 * 185.26461 * 19 18 17 22 22 N 1.31516 * 120.00184 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46864 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46756 * 119.99867 * 23 21 19 26 26 H 1.48498 * 109.47291 * 240.00171 * 23 21 19 27 27 C 1.47417 * 108.70479 * 358.94080 * 9 8 7 28 28 H 1.09010 * 109.46802 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47270 * 300.00046 * 1 2 3 30 30 H 1.08995 * 109.47170 * 60.00467 * 1 2 3 31 31 H 1.08997 * 109.47270 * 239.99954 * 2 1 3 32 32 H 1.09005 * 109.47233 * 119.99552 * 2 1 3 33 33 H 1.09004 * 109.46860 * 299.99414 * 4 3 2 34 34 H 1.08993 * 109.47143 * 59.99872 * 4 3 2 35 35 H 1.09003 * 110.72237 * 271.94357 * 7 5 4 36 36 H 1.09004 * 110.71795 * 35.21424 * 7 5 4 37 37 H 1.08996 * 109.88233 * 218.39201 * 8 7 5 38 38 H 1.08998 * 110.00947 * 97.29901 * 8 7 5 39 39 H 1.08003 * 120.04466 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.84147 * 180.27744 * 14 13 12 41 41 H 1.07998 * 119.79758 * 179.69109 * 15 14 13 42 42 H 1.07999 * 119.96654 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00117 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.36844 * 265.29220 * 27 9 8 45 45 H 1.09005 * 110.37209 * 142.96551 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3960 3.4555 0.8570 7 6 5.3678 3.1024 -0.0358 8 6 5.5538 4.4821 -0.7017 9 7 4.3303 4.7665 -1.4657 10 6 4.0899 5.8872 -2.1749 11 8 3.0664 5.9882 -2.8237 12 6 5.0685 6.9912 -2.1642 13 6 6.4288 6.7258 -2.3355 14 6 7.3375 7.7622 -2.3304 15 6 6.9094 9.0669 -2.1442 16 6 5.5688 9.3438 -1.9678 17 6 4.6386 8.3132 -1.9765 18 8 3.3217 8.5830 -1.8040 19 6 2.9642 9.8820 -1.7569 20 1 3.6997 10.6515 -1.9395 21 6 1.6518 10.2302 -1.4738 22 7 0.7561 9.2931 -1.2519 23 14 1.1565 12.0302 -1.4077 24 1 2.3406 12.8801 -1.6922 25 1 0.1048 12.2916 -2.4229 26 1 0.6305 12.3496 -0.0563 27 6 3.4098 3.6235 -1.3269 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.8340 0.9765 0.8893 34 1 3.8332 0.9767 -0.8907 35 1 5.7784 3.1029 0.9739 36 1 5.8255 2.3183 -0.6390 37 1 6.4125 4.4572 -1.3726 38 1 5.7012 5.2472 0.0605 39 1 6.7680 5.7102 -2.4769 40 1 8.3887 7.5559 -2.4675 41 1 7.6292 9.8720 -2.1366 42 1 5.2429 10.3633 -1.8237 43 1 -0.1618 9.5367 -1.0543 44 1 3.5306 2.9353 -2.1636 45 1 2.3787 3.9718 -1.2670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175516144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:57 Heat of formation + Delta-G solvation = -103.666773 kcal Electronic energy + Delta-G solvation = -26827.942304 eV Core-core repulsion = 23003.382683 eV Total energy + Delta-G solvation = -3824.559622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51988 -40.36743 -39.18441 -38.07393 -38.01265 -34.37182 -33.88530 -32.22481 -31.59147 -30.63417 -30.09875 -27.54319 -26.92950 -24.77621 -23.72069 -23.30165 -23.14311 -21.41245 -20.76911 -19.93460 -18.88880 -18.01828 -17.81788 -17.27094 -16.87920 -16.76036 -16.36867 -16.24288 -15.62875 -15.55999 -15.31326 -15.12104 -14.93967 -14.53280 -14.37071 -14.05145 -13.86436 -13.62301 -13.58676 -13.36411 -13.05763 -13.04414 -12.71718 -12.57176 -12.45636 -12.34486 -12.17020 -12.11497 -12.00859 -11.78913 -11.61241 -11.48410 -10.89086 -10.78649 -10.51137 -9.88318 -9.62073 -9.07114 -8.50179 -6.20612 0.20295 0.69105 1.30177 1.41208 1.50811 1.75186 2.09289 2.13714 2.69619 2.80564 3.14271 3.38739 3.49272 3.58676 3.82436 3.90891 4.06309 4.17425 4.23266 4.26198 4.28864 4.36637 4.42337 4.51131 4.52308 4.54950 4.58933 4.66326 4.74078 4.79680 4.87605 4.90039 4.96264 5.02621 5.04317 5.06630 5.14354 5.25023 5.27572 5.41866 5.50518 5.60145 5.68149 5.93327 6.15390 6.33611 6.50814 6.91041 7.24058 7.74245 8.72583 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.003704 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.621753 B = 7557.968377 C = 9610.092901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.423 6.423 4 C 0.078 3.922 5 C -0.095 4.095 6 H 0.073 0.927 7 C -0.104 4.104 8 C 0.091 3.909 9 N -0.622 5.622 10 C 0.574 3.426 11 O -0.587 6.587 12 C -0.230 4.230 13 C -0.037 4.037 14 C -0.190 4.190 15 C -0.044 4.044 16 C -0.250 4.250 17 C 0.144 3.856 18 O -0.214 6.214 19 C -0.420 4.420 20 H 0.108 0.892 21 C -0.026 4.026 22 N -0.917 5.917 23 Si 1.025 2.975 24 H -0.244 1.244 25 H -0.271 1.271 26 H -0.265 1.265 27 C 0.114 3.886 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.598 -16.528 4.923 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.344 6.344 4 C 0.002 3.998 5 C -0.114 4.114 6 H 0.092 0.908 7 C -0.141 4.141 8 C -0.031 4.031 9 N -0.356 5.356 10 C 0.365 3.635 11 O -0.467 6.467 12 C -0.234 4.234 13 C -0.055 4.055 14 C -0.209 4.209 15 C -0.062 4.062 16 C -0.269 4.269 17 C 0.091 3.909 18 O -0.118 6.118 19 C -0.495 4.495 20 H 0.125 0.875 21 C -0.224 4.224 22 N -0.554 5.554 23 Si 0.843 3.157 24 H -0.166 1.166 25 H -0.196 1.196 26 H -0.190 1.190 27 C -0.008 4.008 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.174 0.826 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 13.506 -16.426 4.617 21.761 hybrid contribution -1.233 0.879 -0.113 1.518 sum 12.273 -15.547 4.504 20.313 Atomic orbital electron populations 1.21802 0.94065 1.03269 1.02101 1.22627 0.95628 0.82764 1.01292 1.87941 1.22463 1.28319 1.95675 1.22493 0.80750 0.94173 1.02396 1.22339 0.97758 0.95579 0.95742 0.90845 1.22688 0.92503 0.95353 1.03592 1.22492 0.86673 0.98417 0.95468 1.48459 1.20409 1.16815 1.49941 1.18306 0.85350 0.81648 0.78192 1.90765 1.30168 1.80942 1.44870 1.19093 0.95334 0.89824 1.19185 1.21315 0.88580 1.01167 0.94440 1.21192 1.00787 0.91459 1.07421 1.21433 0.93496 0.98455 0.92848 1.21289 0.94580 0.98677 1.12375 1.19979 0.84899 0.93799 0.92271 1.84031 1.20002 1.29057 1.78704 1.22013 0.96419 0.80585 1.50508 0.87456 1.26804 0.94288 1.05901 0.95382 1.70280 1.03587 1.35905 1.45603 0.84460 0.79212 0.73354 0.78636 1.16646 1.19619 1.19026 1.22204 0.92783 0.87107 0.98734 0.88712 0.92793 0.93419 0.92270 0.91590 0.89959 0.91293 0.86778 0.87192 0.88435 0.91966 0.82578 0.81481 0.82572 0.85807 0.91946 0.90785 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.42 -10.52 10.20 -148.98 -1.52 -12.04 16 4 C 0.08 1.41 5.38 71.98 0.39 1.80 16 5 C -0.09 -2.21 3.33 -9.40 -0.03 -2.24 16 6 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 7 C -0.10 -1.60 6.42 31.78 0.20 -1.40 16 8 C 0.09 2.18 5.64 86.73 0.49 2.67 16 9 N -0.62 -23.37 3.33 -815.55 -2.71 -26.08 16 10 C 0.57 28.71 7.16 86.69 0.62 29.33 16 11 O -0.59 -36.82 16.71 7.09 0.12 -36.70 16 12 C -0.23 -10.57 5.44 -19.99 -0.11 -10.68 16 13 C -0.04 -1.18 8.51 22.52 0.19 -0.99 16 14 C -0.19 -5.16 10.03 22.25 0.22 -4.94 16 15 C -0.04 -1.39 10.03 22.30 0.22 -1.17 16 16 C -0.25 -10.91 9.12 22.36 0.20 -10.70 16 17 C 0.14 7.68 6.63 22.91 0.15 7.83 16 18 O -0.21 -14.06 8.73 -8.97 -0.08 -14.14 16 19 C -0.42 -26.02 9.44 67.93 0.64 -25.38 16 20 H 0.11 5.97 5.30 -2.91 -0.02 5.95 16 21 C -0.03 -1.57 5.49 84.85 0.47 -1.11 16 22 N -0.92 -61.43 13.67 21.62 0.30 -61.13 16 23 Si 1.03 45.29 29.55 68.60 2.03 47.32 16 24 H -0.24 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 C 0.11 3.91 6.22 86.86 0.54 4.45 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.07 8.04 -2.39 -0.02 1.05 16 37 H 0.10 1.79 5.90 -2.39 -0.01 1.78 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.16 3.71 5.85 -2.91 -0.02 3.70 16 40 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 41 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.12 5.47 5.72 -2.91 -0.02 5.45 16 43 H 0.27 16.61 8.31 -92.71 -0.77 15.84 16 44 H 0.07 2.29 8.00 -2.39 -0.02 2.27 16 45 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 Total: -1.00 -95.50 371.98 4.54 -90.96 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.99 Total: 24.93 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.42 Total: -13.12 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.42 Total: -87.22 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -1.48 Total: -62.87 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -95.50 4.54 -90.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175516144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.709 kcal (2) G-P(sol) polarization free energy of solvation -95.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds