Wall clock time and date at job start Tue Mar 31 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46840 * 2 1 4 4 N 1.46503 * 109.46970 * 119.99316 * 2 1 3 5 5 C 1.34781 * 120.00067 * 275.00184 * 4 2 1 6 6 O 1.21555 * 119.99709 * 0.02562 * 5 4 2 7 7 C 1.47877 * 120.00305 * 180.27261 * 5 4 2 8 8 C 1.39922 * 120.02233 * 359.45656 * 7 5 4 9 9 C 1.38332 * 120.35492 * 179.71407 * 8 7 5 10 10 C 1.37745 * 120.41415 * 0.55922 * 9 8 7 11 11 C 1.40750 * 120.04103 * 359.71744 * 10 9 8 12 12 C 1.41433 * 120.17941 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99860 * 150.17909 * 12 11 10 14 14 C 1.39933 * 120.00422 * 330.18777 * 12 11 10 15 15 N 1.30826 * 120.00531 * 161.72717 * 14 12 11 16 16 Si 1.86796 * 119.99681 * 341.72169 * 14 12 11 17 17 H 1.48498 * 109.47445 * 95.41498 * 16 14 12 18 18 H 1.48507 * 109.47200 * 215.41691 * 16 14 12 19 19 H 1.48503 * 109.47240 * 335.41491 * 16 14 12 20 20 C 1.38995 * 120.02597 * 179.72786 * 7 5 4 21 21 C 1.50695 * 109.47489 * 239.99137 * 2 1 3 22 22 O 1.20822 * 120.00407 * 239.99861 * 21 2 1 23 23 O 1.34229 * 119.99871 * 60.00626 * 21 2 1 24 24 C 1.45202 * 117.00272 * 180.02562 * 23 21 2 25 25 C 1.53002 * 109.47002 * 59.99552 * 24 23 21 26 26 C 1.53001 * 109.47253 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46719 * 299.99531 * 24 23 21 28 28 H 1.09006 * 109.46939 * 60.01031 * 1 2 3 29 29 H 1.09007 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47534 * 300.00693 * 1 2 3 31 31 H 0.96990 * 120.00127 * 95.00331 * 4 2 1 32 32 H 1.08002 * 119.82078 * 359.96976 * 8 7 5 33 33 H 1.08001 * 119.78888 * 180.25380 * 9 8 7 34 34 H 1.08003 * 119.98022 * 179.74249 * 10 9 8 35 35 H 0.96994 * 120.00004 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.20415 * 359.97438 * 20 7 5 37 37 H 1.08996 * 109.47576 * 60.00382 * 25 24 23 38 38 H 1.09003 * 109.47085 * 180.02562 * 25 24 23 39 39 H 1.09006 * 109.46963 * 300.00175 * 25 24 23 40 40 H 1.08997 * 109.47108 * 59.99548 * 26 24 23 41 41 H 1.09003 * 109.46933 * 179.97438 * 26 24 23 42 42 H 1.09004 * 109.46836 * 299.99577 * 26 24 23 43 43 H 1.08997 * 109.47152 * 59.99973 * 27 24 23 44 44 H 1.09003 * 109.46958 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.47481 * 299.99822 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0180 2.3572 6 8 1.8574 1.1613 2.4117 7 6 2.6455 -0.7134 3.5633 8 6 2.9731 -2.0724 3.5026 9 6 3.4457 -2.7284 4.6251 10 6 3.5885 -2.0547 5.8181 11 6 3.2586 -0.6888 5.8998 12 6 3.4046 0.0059 7.1231 13 1 3.6278 1.0626 7.1206 14 6 3.2599 -0.6758 8.3365 15 7 3.7323 -0.1550 9.4398 16 14 2.3922 -2.3294 8.3811 17 1 3.3986 -3.4187 8.3064 18 1 1.6237 -2.4512 9.6460 19 1 1.4643 -2.4327 7.2263 20 6 2.7838 -0.0190 4.7594 21 6 2.0324 -0.7106 -1.2303 22 8 2.7271 -1.6929 -1.1193 23 8 1.7082 -0.2521 -2.4495 24 6 2.2270 -0.9867 -3.5895 25 6 1.7157 -2.4280 -3.5429 26 6 1.7551 -0.3202 -4.8833 27 6 3.7563 -0.9863 -3.5434 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2490 -1.6315 1.1529 32 1 2.8603 -2.6111 2.5734 33 1 3.6997 -3.7765 4.5670 34 1 3.9542 -2.5747 6.6912 35 1 3.6316 -0.6274 10.2810 36 1 2.5284 1.0291 4.8118 37 1 0.6262 -2.4284 -3.5757 38 1 2.1054 -2.9796 -4.3984 39 1 2.0515 -2.9030 -2.6211 40 1 2.1190 0.7067 -4.9167 41 1 2.1449 -0.8715 -5.7391 42 1 0.6655 -0.3209 -4.9159 43 1 4.0921 -1.4613 -2.6216 44 1 4.1457 -1.5381 -4.3989 45 1 4.1205 0.0405 -3.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177891568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:44 Heat of formation + Delta-G solvation = -111.535895 kcal Electronic energy + Delta-G solvation = -26562.552519 eV Core-core repulsion = 22737.651666 eV Total energy + Delta-G solvation = -3824.900852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25815 -39.55139 -37.65088 -37.14058 -35.05695 -34.29116 -33.70715 -31.45730 -30.22549 -29.65524 -27.75949 -27.72452 -25.49543 -25.09370 -23.38947 -21.67308 -20.71994 -20.06248 -19.81459 -18.39432 -17.07011 -16.97367 -16.43902 -16.20305 -15.83063 -15.44105 -14.81581 -14.69425 -14.48363 -14.22295 -13.98030 -13.74690 -13.61383 -13.03721 -12.84910 -12.77489 -12.75640 -12.48010 -12.46931 -12.28799 -12.24275 -12.09783 -11.89702 -11.67964 -11.61733 -11.36278 -11.06419 -10.79900 -10.70561 -10.56002 -10.19067 -10.02506 -9.74581 -9.50530 -9.19454 -9.08258 -7.89389 -7.77547 -7.01368 -4.56213 1.84902 1.93929 2.20789 2.50789 3.05164 3.16918 3.25135 3.41147 3.54955 3.92468 4.24354 4.36803 4.40335 4.46266 4.55573 4.87370 4.95549 5.13015 5.19417 5.29053 5.32320 5.34445 5.36581 5.46338 5.49549 5.54249 5.64286 5.68246 5.87358 5.91300 5.95474 6.01051 6.03478 6.21721 6.36909 6.46858 6.64820 6.66964 6.95837 7.18669 7.38514 7.48631 7.51956 7.70491 7.75162 7.96370 8.27136 8.51329 8.57228 8.70424 10.00756 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.002583 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.095466 B =10837.043286 C =11163.580683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.124 0.876 4 N -0.722 5.722 5 C 0.571 3.429 6 O -0.544 6.544 7 C -0.108 4.108 8 C -0.213 4.213 9 C -0.083 4.083 10 C -0.220 4.220 11 C 0.081 3.919 12 C -0.442 4.442 13 H 0.094 0.906 14 C 0.083 3.917 15 N -0.803 5.803 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.243 1.243 20 C -0.134 4.134 21 C 0.465 3.535 22 O -0.496 6.496 23 O -0.345 6.345 24 C 0.116 3.884 25 C -0.183 4.183 26 C -0.140 4.140 27 C -0.185 4.185 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.286 0.714 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -4.081 -23.166 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.142 0.858 4 N -0.379 5.379 5 C 0.362 3.638 6 O -0.422 6.422 7 C -0.111 4.111 8 C -0.233 4.233 9 C -0.101 4.101 10 C -0.240 4.240 11 C 0.078 3.922 12 C -0.470 4.470 13 H 0.112 0.888 14 C -0.136 4.136 15 N -0.427 5.427 16 Si 0.737 3.263 17 H -0.195 1.195 18 H -0.217 1.217 19 H -0.167 1.167 20 C -0.154 4.154 21 C 0.307 3.693 22 O -0.383 6.383 23 O -0.262 6.262 24 C 0.080 3.920 25 C -0.240 4.240 26 C -0.197 4.197 27 C -0.242 4.242 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.785 -3.480 -22.859 23.612 hybrid contribution -0.018 -1.335 0.071 1.337 sum -4.803 -4.816 -22.788 23.781 Atomic orbital electron populations 1.22135 0.92033 1.03195 1.04250 1.20296 0.96135 0.97957 0.80997 0.85810 1.45831 1.69077 1.14980 1.07971 1.18796 0.75993 0.86170 0.82830 1.90708 1.50489 1.15892 1.85109 1.19324 1.04981 0.94414 0.92418 1.20430 1.11377 0.93574 0.97959 1.20518 0.98514 0.97949 0.93130 1.21192 1.09369 0.96265 0.97127 1.17697 0.89650 0.91502 0.93360 1.19511 1.40557 0.98517 0.88437 0.88811 1.26168 0.92975 0.99439 0.95048 1.69689 1.33214 1.39344 1.00440 0.86316 0.80722 0.80909 0.78378 1.19547 1.21654 1.16655 1.21270 1.02768 0.99760 0.91586 1.23671 0.77425 0.83032 0.85164 1.90585 1.35054 1.25682 1.87025 1.86539 1.69598 1.55617 1.14452 1.22236 0.94192 0.91745 0.83827 1.22496 1.01696 0.95153 1.04701 1.21853 1.02437 1.01510 0.93941 1.22504 0.93821 1.03115 1.04728 0.90416 0.91909 0.90040 0.75147 0.88438 0.88214 0.87846 0.90305 0.86556 0.91907 0.90993 0.89730 0.91360 0.90312 0.91386 0.89679 0.90978 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.42 37.16 0.35 -1.37 16 2 C 0.15 1.96 3.09 -69.08 -0.21 1.75 16 3 H 0.12 1.64 7.58 -51.93 -0.39 1.24 16 4 N -0.72 -11.07 4.90 -55.87 -0.27 -11.35 16 5 C 0.57 11.01 7.74 -12.31 -0.10 10.91 16 6 O -0.54 -11.66 16.00 5.32 0.09 -11.58 16 7 C -0.11 -2.31 5.87 -105.04 -0.62 -2.92 16 8 C -0.21 -4.20 9.55 -38.92 -0.37 -4.57 16 9 C -0.08 -1.71 10.01 -39.73 -0.40 -2.10 16 10 C -0.22 -5.13 7.17 -38.81 -0.28 -5.41 16 11 C 0.08 2.03 5.10 -106.87 -0.55 1.48 16 12 C -0.44 -11.82 9.57 -37.73 -0.36 -12.19 16 13 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 14 C 0.08 2.14 5.40 -17.35 -0.09 2.05 16 15 N -0.80 -21.09 13.93 55.55 0.77 -20.32 16 16 Si 0.91 20.29 24.52 -169.99 -4.17 16.12 16 17 H -0.27 -5.77 6.71 56.52 0.38 -5.40 16 18 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.24 -5.55 6.86 56.52 0.39 -5.16 16 20 C -0.13 -3.19 9.34 -38.44 -0.36 -3.55 16 21 C 0.46 5.65 6.63 36.00 0.24 5.89 16 22 O -0.50 -6.77 11.34 -18.75 -0.21 -6.98 16 23 O -0.35 -3.68 9.79 -39.26 -0.38 -4.07 16 24 C 0.12 1.02 1.13 -90.62 -0.10 0.92 16 25 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 26 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 27 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 28 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.41 5.98 5.81 -40.82 -0.24 5.74 16 32 H 0.10 1.62 6.38 -52.49 -0.33 1.28 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.39 4.72 -52.48 -0.25 2.14 16 35 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 36 H 0.12 2.80 7.64 -52.49 -0.40 2.40 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.89 5.89 -51.93 -0.31 0.58 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -28.88 366.45 -7.02 -35.90 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.47 Total: 8.96 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.89 Total: -12.21 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.50 Total: -31.67 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.51 Total: -22.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.88 -7.02 -35.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177891568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.636 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds