Wall clock time and date at job start Tue Mar 31 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46840 * 2 1 4 4 N 1.46503 * 109.46970 * 119.99316 * 2 1 3 5 5 C 1.34781 * 120.00067 * 275.00184 * 4 2 1 6 6 O 1.21555 * 119.99709 * 0.02562 * 5 4 2 7 7 C 1.47877 * 120.00305 * 180.27261 * 5 4 2 8 8 C 1.39922 * 120.02233 * 359.45656 * 7 5 4 9 9 C 1.38332 * 120.35492 * 179.71407 * 8 7 5 10 10 C 1.37745 * 120.41415 * 0.55922 * 9 8 7 11 11 C 1.40750 * 120.04103 * 359.71744 * 10 9 8 12 12 C 1.41433 * 120.17941 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99860 * 150.17909 * 12 11 10 14 14 C 1.39933 * 120.00422 * 330.18777 * 12 11 10 15 15 N 1.30826 * 120.00531 * 161.72717 * 14 12 11 16 16 Si 1.86796 * 119.99681 * 341.72169 * 14 12 11 17 17 H 1.48498 * 109.47445 * 95.41498 * 16 14 12 18 18 H 1.48507 * 109.47200 * 215.41691 * 16 14 12 19 19 H 1.48503 * 109.47240 * 335.41491 * 16 14 12 20 20 C 1.38995 * 120.02597 * 179.72786 * 7 5 4 21 21 C 1.50695 * 109.47489 * 239.99137 * 2 1 3 22 22 O 1.20822 * 120.00407 * 239.99861 * 21 2 1 23 23 O 1.34229 * 119.99871 * 60.00626 * 21 2 1 24 24 C 1.45202 * 117.00272 * 180.02562 * 23 21 2 25 25 C 1.53002 * 109.47002 * 59.99552 * 24 23 21 26 26 C 1.53001 * 109.47253 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46719 * 299.99531 * 24 23 21 28 28 H 1.09006 * 109.46939 * 60.01031 * 1 2 3 29 29 H 1.09007 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47534 * 300.00693 * 1 2 3 31 31 H 0.96990 * 120.00127 * 95.00331 * 4 2 1 32 32 H 1.08002 * 119.82078 * 359.96976 * 8 7 5 33 33 H 1.08001 * 119.78888 * 180.25380 * 9 8 7 34 34 H 1.08003 * 119.98022 * 179.74249 * 10 9 8 35 35 H 0.96994 * 120.00004 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.20415 * 359.97438 * 20 7 5 37 37 H 1.08996 * 109.47576 * 60.00382 * 25 24 23 38 38 H 1.09003 * 109.47085 * 180.02562 * 25 24 23 39 39 H 1.09006 * 109.46963 * 300.00175 * 25 24 23 40 40 H 1.08997 * 109.47108 * 59.99548 * 26 24 23 41 41 H 1.09003 * 109.46933 * 179.97438 * 26 24 23 42 42 H 1.09004 * 109.46836 * 299.99577 * 26 24 23 43 43 H 1.08997 * 109.47152 * 59.99973 * 27 24 23 44 44 H 1.09003 * 109.46958 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.47481 * 299.99822 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0180 2.3572 6 8 1.8574 1.1613 2.4117 7 6 2.6455 -0.7134 3.5633 8 6 2.9731 -2.0724 3.5026 9 6 3.4457 -2.7284 4.6251 10 6 3.5885 -2.0547 5.8181 11 6 3.2586 -0.6888 5.8998 12 6 3.4046 0.0059 7.1231 13 1 3.6278 1.0626 7.1206 14 6 3.2599 -0.6758 8.3365 15 7 3.7323 -0.1550 9.4398 16 14 2.3922 -2.3294 8.3811 17 1 3.3986 -3.4187 8.3064 18 1 1.6237 -2.4512 9.6460 19 1 1.4643 -2.4327 7.2263 20 6 2.7838 -0.0190 4.7594 21 6 2.0324 -0.7106 -1.2303 22 8 2.7271 -1.6929 -1.1193 23 8 1.7082 -0.2521 -2.4495 24 6 2.2270 -0.9867 -3.5895 25 6 1.7157 -2.4280 -3.5429 26 6 1.7551 -0.3202 -4.8833 27 6 3.7563 -0.9863 -3.5434 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2490 -1.6315 1.1529 32 1 2.8603 -2.6111 2.5734 33 1 3.6997 -3.7765 4.5670 34 1 3.9542 -2.5747 6.6912 35 1 3.6316 -0.6274 10.2810 36 1 2.5284 1.0291 4.8118 37 1 0.6262 -2.4284 -3.5757 38 1 2.1054 -2.9796 -4.3984 39 1 2.0515 -2.9030 -2.6211 40 1 2.1190 0.7067 -4.9167 41 1 2.1449 -0.8715 -5.7391 42 1 0.6655 -0.3209 -4.9159 43 1 4.0921 -1.4613 -2.6216 44 1 4.1457 -1.5381 -4.3989 45 1 4.1205 0.0405 -3.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177891568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:43 Heat of formation + Delta-G solvation = -128.308208 kcal Electronic energy + Delta-G solvation = -26563.279821 eV Core-core repulsion = 22737.651666 eV Total energy + Delta-G solvation = -3825.628155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20250 -41.01797 -39.19400 -38.25985 -36.26740 -35.59558 -35.07700 -33.00305 -31.94181 -31.14053 -28.38241 -28.29457 -27.16096 -26.30724 -24.85718 -22.84391 -22.43723 -21.53456 -20.74900 -19.88368 -18.47339 -17.98775 -17.77236 -17.45383 -17.05253 -16.75252 -16.46423 -16.04799 -15.57586 -15.48346 -15.35580 -14.90771 -14.59879 -14.55979 -14.48296 -14.06232 -13.85121 -13.48391 -13.38940 -13.26721 -13.12135 -12.95449 -12.88771 -12.84957 -12.80747 -12.68230 -12.46095 -12.31986 -12.09297 -11.77223 -11.58165 -11.43668 -11.24336 -11.09243 -10.91975 -10.41760 -9.65133 -9.59762 -8.91998 -6.55693 0.13028 0.72706 0.98867 1.24485 1.26112 1.41534 1.48613 1.89352 2.12008 2.17798 2.63148 3.36600 3.43524 3.72334 3.77573 3.78035 3.92507 3.94604 4.00781 4.24313 4.38361 4.53601 4.55656 4.60739 4.63464 4.70870 4.76684 4.80601 4.86557 4.86891 4.88633 4.89815 5.11927 5.12876 5.14771 5.21428 5.26010 5.27788 5.40649 5.43652 5.62088 5.70101 5.83551 6.06917 6.28350 6.40572 6.61777 6.64221 6.73662 7.08281 8.16779 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.002583 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.095466 B =10837.043286 C =11163.580683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.119 0.881 4 N -0.705 5.705 5 C 0.573 3.427 6 O -0.572 6.572 7 C -0.113 4.113 8 C -0.184 4.184 9 C -0.082 4.082 10 C -0.224 4.224 11 C 0.065 3.935 12 C -0.486 4.486 13 H 0.052 0.948 14 C 0.045 3.955 15 N -0.847 5.847 16 Si 0.966 3.034 17 H -0.248 1.248 18 H -0.277 1.277 19 H -0.251 1.251 20 C -0.161 4.161 21 C 0.473 3.527 22 O -0.511 6.511 23 O -0.345 6.345 24 C 0.106 3.894 25 C -0.180 4.180 26 C -0.137 4.137 27 C -0.183 4.183 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.416 0.584 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.295 0.705 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -7.232 -26.711 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.136 0.864 4 N -0.360 5.360 5 C 0.363 3.637 6 O -0.452 6.452 7 C -0.116 4.116 8 C -0.204 4.204 9 C -0.100 4.100 10 C -0.243 4.243 11 C 0.063 3.937 12 C -0.515 4.515 13 H 0.071 0.929 14 C -0.169 4.169 15 N -0.473 5.473 16 Si 0.788 3.212 17 H -0.173 1.173 18 H -0.204 1.204 19 H -0.174 1.174 20 C -0.181 4.181 21 C 0.315 3.685 22 O -0.400 6.400 23 O -0.261 6.261 24 C 0.070 3.930 25 C -0.238 4.238 26 C -0.194 4.194 27 C -0.241 4.241 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.256 0.744 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.641 -6.642 -26.449 27.847 hybrid contribution 0.266 -0.362 0.836 0.949 sum -5.375 -7.005 -25.613 27.092 Atomic orbital electron populations 1.22094 0.90227 1.03989 1.04615 1.20465 0.97506 0.97462 0.80406 0.86355 1.45618 1.67709 1.15059 1.07651 1.18480 0.76087 0.85738 0.83397 1.90702 1.51811 1.17083 1.85600 1.19591 1.04268 0.95372 0.92359 1.20965 1.07412 0.92577 0.99424 1.21009 0.97150 1.00034 0.91821 1.21389 1.08890 0.95331 0.98703 1.17783 0.90259 0.92792 0.92898 1.19452 1.44488 0.97114 0.90467 0.92947 1.26892 0.93085 1.02753 0.94198 1.69719 1.35099 1.41298 1.01196 0.85481 0.79894 0.77365 0.78421 1.17299 1.20372 1.17425 1.21207 1.04622 0.99322 0.92947 1.23353 0.77072 0.82573 0.85464 1.90593 1.35704 1.26344 1.87321 1.86532 1.69435 1.55830 1.14321 1.22592 0.94132 0.92293 0.83937 1.22471 1.02105 0.94782 1.04395 1.21886 1.02876 1.01600 0.92994 1.22492 0.94129 1.03090 1.04347 0.88061 0.90868 0.91671 0.74393 0.84169 0.83727 0.87517 0.89415 0.88658 0.91299 0.89089 0.91925 0.91345 0.88202 0.90834 0.92137 0.88918 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.42 71.98 0.68 -2.28 16 2 C 0.15 3.52 3.09 44.24 0.14 3.66 16 3 H 0.12 3.02 7.58 -2.39 -0.02 3.00 16 4 N -0.70 -20.15 4.90 -448.94 -2.20 -22.36 16 5 C 0.57 21.63 7.74 86.80 0.67 22.30 16 6 O -0.57 -24.85 16.00 -3.89 -0.06 -24.91 16 7 C -0.11 -4.70 5.87 -20.14 -0.12 -4.81 16 8 C -0.18 -6.56 9.55 22.70 0.22 -6.34 16 9 C -0.08 -3.06 10.01 22.18 0.22 -2.84 16 10 C -0.22 -10.12 7.17 22.77 0.16 -9.95 16 11 C 0.07 3.37 5.10 -21.32 -0.11 3.26 16 12 C -0.49 -27.83 9.57 23.47 0.22 -27.61 16 13 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 14 C 0.05 2.44 5.40 85.25 0.46 2.90 16 15 N -0.85 -46.69 13.93 21.82 0.30 -46.38 16 16 Si 0.97 41.71 24.52 68.60 1.68 43.39 16 17 H -0.25 -9.79 6.71 99.48 0.67 -9.13 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.25 -10.98 6.86 99.48 0.68 -10.30 16 20 C -0.16 -7.94 9.34 23.01 0.21 -7.72 16 21 C 0.47 10.51 6.63 71.23 0.47 10.98 16 22 O -0.51 -12.87 11.34 21.97 0.25 -12.63 16 23 O -0.34 -6.54 9.79 -51.41 -0.50 -7.05 16 24 C 0.11 1.58 1.13 -10.79 -0.01 1.56 16 25 C -0.18 -2.52 8.37 71.98 0.60 -1.91 16 26 C -0.14 -1.26 8.85 71.98 0.64 -0.62 16 27 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 28 H 0.10 1.52 8.11 -2.38 -0.02 1.50 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.42 10.75 5.81 -92.72 -0.54 10.21 16 32 H 0.14 3.84 6.38 -2.91 -0.02 3.82 16 33 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.11 4.73 4.72 -2.91 -0.01 4.72 16 35 H 0.30 14.50 8.30 -92.71 -0.77 13.73 16 36 H 0.10 4.98 7.64 -2.91 -0.02 4.96 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.18 5.89 -2.38 -0.01 1.17 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.06 1.27 5.89 -2.39 -0.01 1.26 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -66.65 366.45 4.94 -61.71 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.41 Total: 29.94 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.06 Total: -21.72 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.90 Total: -68.74 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.32 Total: -44.58 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.68 Total: 43.39 kcal Total: -66.65 4.94 -61.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177891568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.594 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds