Wall clock time and date at job start Tue Mar 31 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47166 * 2 1 4 4 N 1.46504 * 109.46714 * 240.00313 * 2 1 3 5 5 C 1.34773 * 119.99895 * 84.99978 * 4 2 1 6 6 O 1.21546 * 120.00448 * 359.97438 * 5 4 2 7 7 C 1.47887 * 119.99616 * 179.97438 * 5 4 2 8 8 C 1.39922 * 120.02890 * 359.72951 * 7 5 4 9 9 C 1.38326 * 120.35878 * 179.71373 * 8 7 5 10 10 C 1.37750 * 120.41122 * 0.56160 * 9 8 7 11 11 C 1.40748 * 120.03943 * 359.71538 * 10 9 8 12 12 C 1.41442 * 120.17480 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99880 * 150.17796 * 12 11 10 14 14 C 1.39929 * 120.00492 * 330.18272 * 12 11 10 15 15 N 1.30821 * 120.00774 * 161.72724 * 14 12 11 16 16 Si 1.86809 * 119.99702 * 341.72860 * 14 12 11 17 17 H 1.48493 * 109.47215 * 95.41348 * 16 14 12 18 18 H 1.48496 * 109.47133 * 215.41409 * 16 14 12 19 19 H 1.48505 * 109.47053 * 335.41303 * 16 14 12 20 20 C 1.38997 * 120.02214 * 179.97438 * 7 5 4 21 21 C 1.50701 * 109.47184 * 120.00258 * 2 1 3 22 22 O 1.20827 * 119.99779 * 120.00185 * 21 2 1 23 23 O 1.34230 * 120.00113 * 299.99798 * 21 2 1 24 24 C 1.45201 * 117.00222 * 180.02562 * 23 21 2 25 25 C 1.53002 * 109.46774 * 59.99956 * 24 23 21 26 26 C 1.52993 * 109.47210 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.46872 * 300.00139 * 24 23 21 28 28 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47116 * 299.99580 * 1 2 3 30 30 H 1.08997 * 109.47462 * 59.99725 * 1 2 3 31 31 H 0.97003 * 119.99365 * 264.99727 * 4 2 1 32 32 H 1.08002 * 119.81595 * 359.97255 * 8 7 5 33 33 H 1.08004 * 119.79304 * 180.25168 * 9 8 7 34 34 H 1.08004 * 119.97723 * 179.74505 * 10 9 8 35 35 H 0.96993 * 120.01033 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.20248 * 359.97438 * 20 7 5 37 37 H 1.08997 * 109.47249 * 59.99890 * 25 24 23 38 38 H 1.09003 * 109.46750 * 180.02562 * 25 24 23 39 39 H 1.09005 * 109.47089 * 300.00008 * 25 24 23 40 40 H 1.09004 * 109.47432 * 60.00125 * 26 24 23 41 41 H 1.08996 * 109.47449 * 179.97438 * 26 24 23 42 42 H 1.08997 * 109.47403 * 300.00469 * 26 24 23 43 43 H 1.08998 * 109.46797 * 60.00005 * 27 24 23 44 44 H 1.08996 * 109.46915 * 179.97438 * 27 24 23 45 45 H 1.08994 * 109.46701 * 299.99893 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8575 1.1611 -2.4119 7 6 2.6403 -0.7152 -3.5646 8 6 2.9791 -2.0713 -3.5009 9 6 3.4357 -2.7314 -4.6275 10 6 3.5731 -2.0592 -5.8219 11 6 3.2428 -0.6935 -5.9038 12 6 3.3823 -0.0005 -7.1289 13 1 2.7318 0.8312 -7.3560 14 6 4.3630 -0.3925 -8.0468 15 7 4.2773 -0.0156 -9.2967 16 14 5.7947 -1.4542 -7.4876 17 1 5.4875 -2.8817 -7.7577 18 1 7.0204 -1.0628 -8.2289 19 1 6.0142 -1.2621 -6.0315 20 6 2.7727 -0.0224 -4.7622 21 6 2.0324 -0.7105 1.2304 22 8 2.7270 -1.6928 1.1195 23 8 1.7081 -0.2519 2.4496 24 6 2.2278 -0.9858 3.5897 25 6 3.7571 -0.9842 3.5431 26 6 1.7568 -0.3187 4.8834 27 6 1.7176 -2.4276 3.5436 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2489 -1.6318 -1.1527 32 1 2.8796 -2.6064 -2.5681 33 1 3.6907 -3.7793 -4.5690 34 1 3.9342 -2.5805 -6.6961 35 1 4.9573 -0.2871 -9.9329 36 1 2.5158 1.0252 -4.8151 37 1 4.1205 0.0429 3.5758 38 1 4.1472 -1.5356 4.3987 39 1 4.0930 -1.4593 2.6213 40 1 0.6672 -0.3194 4.9168 41 1 2.1464 -0.8698 5.7392 42 1 2.1205 0.7083 4.9159 43 1 2.0536 -2.9025 2.6218 44 1 2.1080 -2.9786 4.3991 45 1 0.6282 -2.4286 3.5767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178812263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:45 Heat of formation + Delta-G solvation = -128.299642 kcal Electronic energy + Delta-G solvation = -26573.789642 eV Core-core repulsion = 22748.161859 eV Total energy + Delta-G solvation = -3825.627783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20245 -41.01917 -39.19496 -38.26061 -36.26785 -35.59708 -35.07794 -33.00317 -31.94244 -31.14076 -28.38304 -28.29624 -27.16117 -26.30786 -24.85748 -22.84461 -22.43793 -21.53456 -20.74967 -19.88411 -18.47606 -17.98889 -17.76995 -17.45617 -17.05233 -16.75403 -16.47018 -16.04924 -15.57615 -15.47145 -15.35599 -14.90836 -14.59441 -14.57506 -14.48875 -14.10849 -13.80493 -13.44541 -13.39666 -13.30961 -13.12283 -12.95395 -12.88851 -12.86308 -12.78589 -12.68726 -12.45667 -12.33000 -12.09812 -11.77789 -11.58215 -11.43719 -11.24482 -11.09713 -10.91732 -10.41797 -9.65209 -9.59763 -8.92212 -6.55697 0.12976 0.72567 0.98785 1.24514 1.25604 1.40921 1.47838 1.88951 2.11641 2.17668 2.63152 3.36369 3.43593 3.72271 3.77480 3.78087 3.92392 3.94529 4.00809 4.24252 4.38306 4.53546 4.55607 4.60662 4.63426 4.70875 4.76599 4.80559 4.86508 4.86841 4.88554 4.89774 5.11891 5.12804 5.14741 5.21383 5.25901 5.27751 5.40566 5.43579 5.62054 5.70065 5.83553 6.06873 6.28366 6.40544 6.61710 6.64129 6.73692 7.08268 8.16560 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.002650 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.662392 B =10563.354131 C =11042.860369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.119 0.881 4 N -0.705 5.705 5 C 0.573 3.427 6 O -0.572 6.572 7 C -0.113 4.113 8 C -0.184 4.184 9 C -0.082 4.082 10 C -0.224 4.224 11 C 0.065 3.935 12 C -0.486 4.486 13 H 0.053 0.947 14 C 0.046 3.954 15 N -0.847 5.847 16 Si 0.965 3.035 17 H -0.247 1.247 18 H -0.277 1.277 19 H -0.253 1.253 20 C -0.160 4.160 21 C 0.473 3.527 22 O -0.511 6.511 23 O -0.345 6.345 24 C 0.106 3.894 25 C -0.184 4.184 26 C -0.137 4.137 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.416 0.584 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.295 0.705 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -6.619 27.299 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.136 0.864 4 N -0.360 5.360 5 C 0.363 3.637 6 O -0.452 6.452 7 C -0.116 4.116 8 C -0.204 4.204 9 C -0.100 4.100 10 C -0.243 4.243 11 C 0.063 3.937 12 C -0.515 4.515 13 H 0.071 0.929 14 C -0.168 4.168 15 N -0.473 5.473 16 Si 0.787 3.213 17 H -0.172 1.172 18 H -0.204 1.204 19 H -0.176 1.176 20 C -0.181 4.181 21 C 0.315 3.685 22 O -0.400 6.400 23 O -0.261 6.261 24 C 0.070 3.930 25 C -0.241 4.241 26 C -0.194 4.194 27 C -0.238 4.238 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.256 0.744 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.387 -6.035 27.032 27.904 hybrid contribution 0.689 -0.263 -0.718 1.029 sum -2.699 -6.298 26.314 27.191 Atomic orbital electron populations 1.22092 0.90223 1.03989 1.04608 1.20467 0.97507 0.97462 0.80405 0.86351 1.45620 1.67708 1.15059 1.07654 1.18476 0.76103 0.85732 0.83385 1.90700 1.51793 1.17086 1.85609 1.19595 1.04181 0.95354 0.92471 1.20964 1.07394 0.92693 0.99318 1.21009 0.97229 1.00051 0.91738 1.21392 1.10067 0.93994 0.98854 1.17784 0.91495 0.92419 0.92044 1.19454 1.17021 1.15287 0.99735 0.92865 1.26865 1.01121 0.95420 0.93427 1.69711 1.34295 1.39464 1.03805 0.85501 0.76526 0.79047 0.80204 1.17201 1.20397 1.17643 1.21204 1.06547 0.98475 0.91850 1.23358 0.77071 0.82571 0.85466 1.90594 1.35712 1.26340 1.87323 1.86532 1.69396 1.55865 1.14320 1.22591 0.94121 0.92304 0.83936 1.22495 0.94139 1.03089 1.04342 1.21883 1.02888 1.01592 0.92996 1.22468 1.02113 0.94771 1.04398 0.90865 0.88064 0.91682 0.74390 0.84174 0.83732 0.87516 0.89413 0.88642 0.91962 0.88918 0.92145 0.90839 0.88204 0.91337 0.91919 0.89091 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.42 71.98 0.68 -2.28 16 2 C 0.15 3.52 3.09 44.25 0.14 3.66 16 3 H 0.12 3.02 7.58 -2.39 -0.02 3.00 16 4 N -0.70 -20.15 4.90 -448.93 -2.20 -22.36 16 5 C 0.57 21.62 7.74 86.80 0.67 22.30 16 6 O -0.57 -24.84 16.00 -3.86 -0.06 -24.90 16 7 C -0.11 -4.70 5.87 -20.13 -0.12 -4.82 16 8 C -0.18 -6.56 9.55 22.70 0.22 -6.34 16 9 C -0.08 -3.07 10.01 22.18 0.22 -2.84 16 10 C -0.22 -10.12 7.17 22.77 0.16 -9.95 16 11 C 0.07 3.36 5.10 -21.32 -0.11 3.25 16 12 C -0.49 -27.80 9.57 23.47 0.22 -27.57 16 13 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 14 C 0.05 2.50 5.40 85.25 0.46 2.96 16 15 N -0.85 -46.66 13.93 21.82 0.30 -46.35 16 16 Si 0.96 41.93 24.52 68.60 1.68 43.61 16 17 H -0.25 -9.79 6.71 99.48 0.67 -9.13 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.25 -11.23 6.86 99.48 0.68 -10.55 16 20 C -0.16 -7.93 9.34 23.01 0.21 -7.71 16 21 C 0.47 10.51 6.63 71.24 0.47 10.98 16 22 O -0.51 -12.88 11.34 21.96 0.25 -12.63 16 23 O -0.34 -6.54 9.79 -51.42 -0.50 -7.05 16 24 C 0.11 1.58 1.13 -10.79 -0.01 1.56 16 25 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 26 C -0.14 -1.26 8.85 71.98 0.64 -0.62 16 27 C -0.18 -2.52 8.37 71.98 0.60 -1.91 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.42 10.75 5.81 -92.71 -0.54 10.21 16 32 H 0.14 3.85 6.38 -2.91 -0.02 3.83 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.11 4.74 4.72 -2.91 -0.01 4.72 16 35 H 0.30 14.51 8.30 -92.71 -0.77 13.74 16 36 H 0.10 4.99 7.64 -2.91 -0.02 4.97 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.27 5.89 -2.38 -0.01 1.26 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 1.18 5.89 -2.39 -0.01 1.17 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.59 366.45 4.94 -61.65 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.41 Total: 29.65 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 5.06 Total: -21.63 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.90 Total: -68.71 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.32 Total: -44.57 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.68 Total: 43.61 kcal Total: -66.59 4.94 -61.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178812263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.651 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds