Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47388 * 2 1 4 4 C 1.34220 * 117.00260 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00072 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47188 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.47157 * 305.00132 * 7 6 4 9 9 C 1.53004 * 109.47322 * 185.00321 * 7 6 4 10 10 N 1.46499 * 109.47431 * 65.00055 * 7 6 4 11 11 C 1.46501 * 119.99543 * 59.99791 * 10 7 6 12 12 C 1.34769 * 120.00543 * 240.00476 * 10 7 6 13 13 O 1.21556 * 120.00113 * 4.67289 * 12 10 7 14 14 C 1.47889 * 120.00481 * 184.67732 * 12 10 7 15 15 C 1.39926 * 120.02052 * 22.25699 * 14 12 10 16 16 C 1.38329 * 120.35363 * 179.71832 * 15 14 12 17 17 C 1.37751 * 120.41311 * 0.55799 * 16 15 14 18 18 C 1.40746 * 120.04012 * 359.71856 * 17 16 15 19 19 C 1.41436 * 120.18021 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99902 * 335.08589 * 19 18 17 21 21 C 1.39936 * 120.00413 * 155.08801 * 19 18 17 22 22 N 1.30832 * 119.99577 * 342.88414 * 21 19 18 23 23 Si 1.86795 * 120.00441 * 162.88620 * 21 19 18 24 24 H 1.48502 * 109.46906 * 59.99567 * 23 21 19 25 25 H 1.48494 * 109.47570 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46845 * 300.00310 * 23 21 19 27 27 C 1.38995 * 120.02641 * 202.52893 * 14 12 10 28 28 H 1.09002 * 109.47081 * 60.00127 * 1 2 3 29 29 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47493 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47017 * 239.99655 * 2 1 3 32 32 H 1.09002 * 109.47081 * 119.99873 * 2 1 3 33 33 H 1.09001 * 109.46878 * 60.00217 * 6 4 3 34 34 H 1.09001 * 109.47609 * 300.00080 * 6 4 3 35 35 H 1.08998 * 109.46870 * 300.00116 * 9 7 6 36 36 H 1.08994 * 109.46861 * 59.99990 * 9 7 6 37 37 H 1.08998 * 109.47146 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.47173 * 84.18084 * 11 10 7 39 39 H 1.09003 * 109.47247 * 204.17562 * 11 10 7 40 40 H 1.09000 * 109.47450 * 324.18035 * 11 10 7 41 41 H 1.07995 * 119.82057 * 359.97438 * 15 14 12 42 42 H 1.08001 * 119.79182 * 180.25566 * 16 15 14 43 43 H 1.07996 * 119.98130 * 179.74726 * 17 16 15 44 44 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.20416 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7806 2.2499 0.8423 9 6 6.0332 4.2657 0.1254 10 7 5.9059 2.2483 -1.2514 11 6 5.5846 2.8801 -2.5335 12 6 6.6219 1.1069 -1.2233 13 8 6.8160 0.5370 -0.1673 14 6 7.1715 0.5476 -2.4771 15 6 7.3692 1.3774 -3.5863 16 6 7.8883 0.8627 -4.7607 17 6 8.2060 -0.4743 -4.8557 18 6 8.0087 -1.3255 -3.7523 19 6 8.3343 -2.6987 -3.8465 20 1 8.3445 -3.1864 -4.8100 21 6 8.6432 -3.4254 -2.6912 22 7 8.9597 -2.7969 -1.5883 23 14 8.6038 -5.2926 -2.7238 24 1 9.5744 -5.7907 -3.7313 25 1 8.9679 -5.8190 -1.3839 26 1 7.2382 -5.7526 -3.0826 27 6 7.4869 -0.8038 -2.5565 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5843 3.4700 0.8895 34 1 3.5852 3.4690 -0.8904 35 1 5.7012 4.8730 -0.7167 36 1 5.6930 4.7187 1.0565 37 1 7.1217 4.2086 0.1250 38 1 6.3186 3.6563 -2.7501 39 1 5.6057 2.1296 -3.3238 40 1 4.5907 3.3244 -2.4808 41 1 7.1189 2.4261 -3.5238 42 1 8.0410 1.5123 -5.6099 43 1 8.6071 -0.8695 -5.7773 44 1 9.1742 -3.3007 -0.7875 45 1 7.3322 -1.4487 -1.7041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181714479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = -84.116564 kcal Electronic energy + Delta-G solvation = -27549.613491 eV Core-core repulsion = 23725.901630 eV Total energy + Delta-G solvation = -3823.711861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51160 -39.37630 -37.23345 -36.45417 -35.62420 -33.82382 -32.49709 -31.74023 -29.71700 -29.34468 -28.37286 -26.78624 -25.15729 -23.71008 -22.90074 -21.34078 -20.91350 -20.02265 -18.71023 -17.63546 -17.44157 -16.70752 -16.27433 -15.96575 -15.56433 -15.07335 -14.88608 -14.73116 -14.16671 -13.70789 -13.57456 -13.12778 -13.00843 -12.94498 -12.85858 -12.56685 -12.43538 -12.22369 -12.11930 -11.90383 -11.78967 -11.70671 -11.63043 -11.53733 -11.08299 -10.88016 -10.86692 -10.58133 -10.47823 -10.24181 -10.17474 -9.88587 -9.52987 -9.14895 -8.73067 -8.18138 -7.52088 -7.40960 -6.71629 -4.34289 2.36982 2.44469 2.71533 2.88159 3.10694 3.12645 3.20980 3.49179 3.94997 3.98662 4.62745 4.69293 4.72050 4.85251 4.92696 5.08925 5.19489 5.22874 5.29548 5.37944 5.51048 5.58055 5.63449 5.63859 5.66607 5.69991 5.78892 5.82597 6.09183 6.12033 6.17810 6.25643 6.40833 6.58664 6.76829 7.02347 7.06533 7.14828 7.29129 7.47131 7.75315 7.85939 7.96978 8.00037 8.12257 8.26263 8.58052 8.87457 8.91693 9.13172 10.22407 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004312 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.418089 B = 6492.532344 C = 7821.469338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.446 3.554 5 O -0.467 6.467 6 C -0.123 4.123 7 C 0.146 3.854 8 H 0.108 0.892 9 C -0.157 4.157 10 N -0.616 5.616 11 C 0.066 3.934 12 C 0.571 3.429 13 O -0.525 6.525 14 C -0.123 4.123 15 C -0.240 4.240 16 C -0.101 4.101 17 C -0.215 4.215 18 C 0.100 3.900 19 C -0.463 4.463 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.781 5.781 23 Si 0.909 3.091 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.093 4.093 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.284 0.716 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 11.479 2.830 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.286 3.714 5 O -0.351 6.351 6 C -0.162 4.162 7 C 0.042 3.958 8 H 0.126 0.874 9 C -0.216 4.216 10 N -0.351 5.351 11 C -0.077 4.077 12 C 0.363 3.637 13 O -0.401 6.401 14 C -0.126 4.126 15 C -0.260 4.260 16 C -0.119 4.119 17 C -0.234 4.234 18 C 0.097 3.903 19 C -0.492 4.492 20 H 0.097 0.903 21 C -0.146 4.146 22 N -0.406 5.406 23 Si 0.733 3.267 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.113 4.113 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.485 10.769 3.667 16.891 hybrid contribution 0.017 -0.873 -0.062 0.875 sum -12.468 9.896 3.605 16.321 Atomic orbital electron populations 1.21787 0.92879 1.02839 1.03175 1.22967 0.94978 0.80469 1.02840 1.86450 1.25131 1.32249 1.84854 1.23677 0.80519 0.93149 0.74039 1.90889 1.59629 1.42444 1.42126 1.21857 0.96994 0.91595 1.05726 1.20746 0.89887 0.95051 0.90120 0.87401 1.22104 1.02130 0.95377 1.01953 1.47652 1.56008 1.25947 1.05523 1.22473 0.98743 0.99222 0.87220 1.18783 0.76552 0.78606 0.89736 1.90684 1.58295 1.58531 1.32571 1.19483 1.05153 0.95631 0.92362 1.21206 1.11770 0.99011 0.93991 1.20467 0.99908 0.95195 0.96363 1.21090 1.09407 0.93275 0.99676 1.17581 0.88795 0.93130 0.90788 1.19540 1.41443 0.94041 0.94185 0.90255 1.25955 0.92545 1.01253 0.94860 1.69799 1.30358 1.38495 1.01911 0.86352 0.79834 0.82190 0.78282 1.18989 1.20249 1.18816 1.21598 0.97752 0.92605 0.99387 0.91611 0.90367 0.91718 0.91164 0.91363 0.87209 0.87700 0.92178 0.91571 0.91521 0.92826 0.87746 0.93250 0.86710 0.89065 0.88843 0.90435 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -4.98 10.22 -39.23 -0.40 -5.38 16 4 C 0.45 6.82 7.82 36.01 0.28 7.10 16 5 O -0.47 -9.49 13.27 -24.24 -0.32 -9.82 16 6 C -0.12 -1.40 5.23 -27.88 -0.15 -1.54 16 7 C 0.15 2.07 2.25 -67.93 -0.15 1.92 16 8 H 0.11 1.87 6.72 -51.92 -0.35 1.52 16 9 C -0.16 -1.65 9.19 37.16 0.34 -1.31 16 10 N -0.62 -10.72 2.25 -175.02 -0.39 -11.11 16 11 C 0.07 0.92 7.76 59.85 0.46 1.39 16 12 C 0.57 13.26 6.52 -12.31 -0.08 13.18 16 13 O -0.53 -14.05 14.91 -9.90 -0.15 -14.20 16 14 C -0.12 -3.04 5.56 -105.03 -0.58 -3.62 16 15 C -0.24 -5.16 7.56 -38.92 -0.29 -5.45 16 16 C -0.10 -2.20 10.01 -39.73 -0.40 -2.59 16 17 C -0.21 -5.24 9.78 -38.81 -0.38 -5.62 16 18 C 0.10 2.72 5.57 -106.87 -0.60 2.13 16 19 C -0.46 -12.58 9.05 -37.73 -0.34 -12.92 16 20 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 21 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 22 N -0.78 -21.63 10.94 55.55 0.61 -21.02 16 23 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.09 -2.60 8.23 -38.44 -0.32 -2.92 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.98 6.49 -51.93 -0.34 0.64 16 35 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.10 1.68 4.93 -51.93 -0.26 1.43 16 40 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 41 H 0.12 2.04 4.16 -52.49 -0.22 1.82 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 44 H 0.28 7.29 8.30 -40.82 -0.34 6.95 16 45 H 0.13 3.97 5.91 -52.49 -0.31 3.66 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -33.97 365.54 -8.20 -42.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.35 Total: 7.78 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.68 Total: -8.35 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.21 Total: -32.13 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.87 Total: -29.39 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.97 -8.20 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181714479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.945 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds