Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47388 * 2 1 4 4 C 1.34220 * 117.00260 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00072 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47188 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.47157 * 305.00132 * 7 6 4 9 9 C 1.53004 * 109.47322 * 185.00321 * 7 6 4 10 10 N 1.46499 * 109.47431 * 65.00055 * 7 6 4 11 11 C 1.46501 * 119.99543 * 59.99791 * 10 7 6 12 12 C 1.34769 * 120.00543 * 240.00476 * 10 7 6 13 13 O 1.21556 * 120.00113 * 4.67289 * 12 10 7 14 14 C 1.47889 * 120.00481 * 184.67732 * 12 10 7 15 15 C 1.39926 * 120.02052 * 22.25699 * 14 12 10 16 16 C 1.38329 * 120.35363 * 179.71832 * 15 14 12 17 17 C 1.37751 * 120.41311 * 0.55799 * 16 15 14 18 18 C 1.40746 * 120.04012 * 359.71856 * 17 16 15 19 19 C 1.41436 * 120.18021 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99902 * 335.08589 * 19 18 17 21 21 C 1.39936 * 120.00413 * 155.08801 * 19 18 17 22 22 N 1.30832 * 119.99577 * 342.88414 * 21 19 18 23 23 Si 1.86795 * 120.00441 * 162.88620 * 21 19 18 24 24 H 1.48502 * 109.46906 * 59.99567 * 23 21 19 25 25 H 1.48494 * 109.47570 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46845 * 300.00310 * 23 21 19 27 27 C 1.38995 * 120.02641 * 202.52893 * 14 12 10 28 28 H 1.09002 * 109.47081 * 60.00127 * 1 2 3 29 29 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47493 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47017 * 239.99655 * 2 1 3 32 32 H 1.09002 * 109.47081 * 119.99873 * 2 1 3 33 33 H 1.09001 * 109.46878 * 60.00217 * 6 4 3 34 34 H 1.09001 * 109.47609 * 300.00080 * 6 4 3 35 35 H 1.08998 * 109.46870 * 300.00116 * 9 7 6 36 36 H 1.08994 * 109.46861 * 59.99990 * 9 7 6 37 37 H 1.08998 * 109.47146 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.47173 * 84.18084 * 11 10 7 39 39 H 1.09003 * 109.47247 * 204.17562 * 11 10 7 40 40 H 1.09000 * 109.47450 * 324.18035 * 11 10 7 41 41 H 1.07995 * 119.82057 * 359.97438 * 15 14 12 42 42 H 1.08001 * 119.79182 * 180.25566 * 16 15 14 43 43 H 1.07996 * 119.98130 * 179.74726 * 17 16 15 44 44 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.20416 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7806 2.2499 0.8423 9 6 6.0332 4.2657 0.1254 10 7 5.9059 2.2483 -1.2514 11 6 5.5846 2.8801 -2.5335 12 6 6.6219 1.1069 -1.2233 13 8 6.8160 0.5370 -0.1673 14 6 7.1715 0.5476 -2.4771 15 6 7.3692 1.3774 -3.5863 16 6 7.8883 0.8627 -4.7607 17 6 8.2060 -0.4743 -4.8557 18 6 8.0087 -1.3255 -3.7523 19 6 8.3343 -2.6987 -3.8465 20 1 8.3445 -3.1864 -4.8100 21 6 8.6432 -3.4254 -2.6912 22 7 8.9597 -2.7969 -1.5883 23 14 8.6038 -5.2926 -2.7238 24 1 9.5744 -5.7907 -3.7313 25 1 8.9679 -5.8190 -1.3839 26 1 7.2382 -5.7526 -3.0826 27 6 7.4869 -0.8038 -2.5565 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5843 3.4700 0.8895 34 1 3.5852 3.4690 -0.8904 35 1 5.7012 4.8730 -0.7167 36 1 5.6930 4.7187 1.0565 37 1 7.1217 4.2086 0.1250 38 1 6.3186 3.6563 -2.7501 39 1 5.6057 2.1296 -3.3238 40 1 4.5907 3.3244 -2.4808 41 1 7.1189 2.4261 -3.5238 42 1 8.0410 1.5123 -5.6099 43 1 8.6071 -0.8695 -5.7773 44 1 9.1742 -3.3007 -0.7875 45 1 7.3322 -1.4487 -1.7041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181714479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -104.619528 kcal Electronic energy + Delta-G solvation = -27550.502567 eV Core-core repulsion = 23725.901630 eV Total energy + Delta-G solvation = -3824.600936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78480 -40.90778 -38.93395 -37.85447 -37.08136 -35.68856 -33.88740 -32.69250 -31.49075 -31.21104 -29.30729 -28.15157 -27.04298 -24.93147 -24.18389 -22.79683 -22.58192 -21.43633 -20.19071 -19.36525 -18.67476 -17.97573 -17.62216 -17.40576 -17.23862 -16.62633 -16.53434 -16.20501 -15.50566 -15.11107 -14.99586 -14.62175 -14.53057 -14.17300 -14.04080 -13.98865 -13.68673 -13.52436 -13.42938 -13.30769 -13.02543 -12.85315 -12.78112 -12.73246 -12.58723 -12.54613 -12.44538 -11.98208 -11.94889 -11.75180 -11.56709 -11.44804 -11.31894 -11.07817 -10.49843 -9.63625 -9.40219 -9.31578 -8.65930 -6.39090 0.48680 1.01141 1.25979 1.30970 1.44466 1.47037 1.68646 2.08086 2.15760 2.23992 2.78320 3.59289 3.67939 3.69682 3.91681 3.99239 4.05656 4.17922 4.20739 4.26265 4.33129 4.47551 4.54291 4.61681 4.71651 4.72648 4.79558 4.87503 4.89661 4.90503 4.97579 5.07494 5.09599 5.14740 5.22599 5.30657 5.34369 5.50311 5.52969 5.78138 5.86629 5.97613 6.05710 6.29628 6.45850 6.65969 6.81434 6.86918 6.96149 7.44443 8.29781 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004312 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.418089 B = 6492.532344 C = 7821.469338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.440 3.560 5 O -0.529 6.529 6 C -0.112 4.112 7 C 0.138 3.862 8 H 0.064 0.936 9 C -0.146 4.146 10 N -0.604 5.604 11 C 0.053 3.947 12 C 0.562 3.438 13 O -0.580 6.580 14 C -0.138 4.138 15 C -0.213 4.213 16 C -0.098 4.098 17 C -0.219 4.219 18 C 0.066 3.934 19 C -0.503 4.503 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.829 5.829 23 Si 0.983 3.017 24 H -0.248 1.248 25 H -0.273 1.273 26 H -0.261 1.261 27 C -0.135 4.135 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.284 0.716 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 15.320 1.251 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.284 3.716 5 O -0.417 6.417 6 C -0.150 4.150 7 C 0.035 3.965 8 H 0.082 0.918 9 C -0.204 4.204 10 N -0.337 5.337 11 C -0.087 4.087 12 C 0.353 3.647 13 O -0.460 6.460 14 C -0.141 4.141 15 C -0.232 4.232 16 C -0.116 4.116 17 C -0.239 4.239 18 C 0.064 3.936 19 C -0.532 4.532 20 H 0.102 0.898 21 C -0.188 4.188 22 N -0.454 5.454 23 Si 0.803 3.197 24 H -0.172 1.172 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.156 4.156 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.181 0.819 42 H 0.160 0.840 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.513 14.693 2.051 20.753 hybrid contribution 0.508 -1.818 0.390 1.927 sum -14.005 12.875 2.441 19.180 Atomic orbital electron populations 1.21780 0.89465 1.04221 1.04137 1.23142 0.97590 0.79953 1.01314 1.86467 1.24325 1.32657 1.84232 1.24657 0.80565 0.94265 0.72112 1.90912 1.60942 1.44761 1.45103 1.21999 0.94224 0.89384 1.09398 1.21015 0.92178 0.96258 0.87074 0.91798 1.22052 1.00693 0.92743 1.04921 1.47656 1.53768 1.24007 1.08290 1.22700 1.02327 0.99055 0.84659 1.18722 0.77391 0.80173 0.88393 1.90648 1.60708 1.60612 1.34057 1.19876 1.04779 0.95030 0.94440 1.21809 1.08314 1.00772 0.92311 1.21002 0.98087 0.94582 0.97946 1.21417 1.08839 0.94515 0.99113 1.17928 0.89743 0.94157 0.91742 1.19847 1.43465 0.94971 0.94922 0.89758 1.26906 0.91461 1.06391 0.94039 1.69935 1.32414 1.40375 1.02701 0.85247 0.80122 0.75643 0.78694 1.17184 1.19804 1.18500 1.21359 1.01319 0.94067 0.98858 0.90771 0.88837 0.90497 0.93233 0.92609 0.82938 0.84102 0.89118 0.88566 0.93503 0.89618 0.89960 0.88858 0.81913 0.84042 0.87451 0.90580 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.36 -9.32 10.22 -51.32 -0.52 -9.85 16 4 C 0.44 13.26 7.82 71.24 0.56 13.82 16 5 O -0.53 -22.80 13.27 27.21 0.36 -22.44 16 6 C -0.11 -2.15 5.23 29.85 0.16 -1.99 16 7 C 0.14 3.66 2.25 44.99 0.10 3.76 16 8 H 0.06 2.30 6.72 -2.38 -0.02 2.28 16 9 C -0.15 -2.45 9.19 71.98 0.66 -1.79 16 10 N -0.60 -20.23 2.25 -825.92 -1.86 -22.09 16 11 C 0.05 1.25 7.76 127.77 0.99 2.24 16 12 C 0.56 27.19 6.52 86.80 0.57 27.76 16 13 O -0.58 -33.72 14.91 10.66 0.16 -33.57 16 14 C -0.14 -7.05 5.56 -20.13 -0.11 -7.16 16 15 C -0.21 -8.71 7.56 22.70 0.17 -8.54 16 16 C -0.10 -4.01 10.01 22.18 0.22 -3.79 16 17 C -0.22 -10.71 9.78 22.77 0.22 -10.48 16 18 C 0.07 3.83 5.57 -21.32 -0.12 3.72 16 19 C -0.50 -29.00 9.05 23.47 0.21 -28.79 16 20 H 0.08 4.55 7.90 -2.91 -0.02 4.52 16 21 C 0.03 1.47 5.15 85.25 0.44 1.91 16 22 N -0.83 -49.92 10.94 21.82 0.24 -49.69 16 23 Si 0.98 42.17 29.59 68.60 2.03 44.20 16 24 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 C -0.14 -8.14 8.23 23.01 0.19 -7.95 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.14 1.74 6.49 -2.39 -0.02 1.73 16 35 H 0.09 1.00 7.67 -2.39 -0.02 0.99 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.55 7.20 -2.38 -0.02 1.53 16 39 H 0.08 2.35 4.93 -2.39 -0.01 2.34 16 40 H 0.09 1.44 6.36 -2.39 -0.02 1.43 16 41 H 0.16 5.02 4.16 -2.91 -0.01 5.01 16 42 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 44 H 0.28 15.91 8.30 -92.71 -0.77 15.14 16 45 H 0.09 5.90 5.91 -2.91 -0.02 5.88 16 Total: -1.00 -87.36 365.54 6.85 -80.51 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 1.00 Total: 29.85 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.45 Total: -16.93 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.62 Total: -71.78 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: 0.00 Total: -65.86 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -87.36 6.85 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181714479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.114 kcal (2) G-P(sol) polarization free energy of solvation -87.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds