Wall clock time and date at job start Tue Mar 31 2020 12:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47023 * 2 1 4 4 C 1.36001 * 116.99809 * 179.97438 * 3 2 1 5 5 C 1.38095 * 119.99151 * 0.25447 * 4 3 2 6 6 C 1.39957 * 119.82616 * 180.24854 * 5 4 3 7 7 C 1.47006 * 120.09489 * 179.73915 * 6 5 4 8 8 C 1.34983 * 119.99730 * 179.73100 * 7 6 5 9 9 C 1.46256 * 119.99532 * 180.02562 * 8 7 6 10 10 O 1.21719 * 120.00172 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99651 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00033 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 C 1.39957 * 119.80901 * 359.47364 * 6 5 4 24 24 C 1.37749 * 119.97287 * 0.27119 * 23 6 5 25 25 C 1.38859 * 120.17729 * 0.02562 * 24 23 6 26 26 O 1.35821 * 119.90268 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.46935 * 60.00493 * 1 2 3 28 28 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00364 * 1 2 3 30 30 H 1.08998 * 109.47630 * 239.99636 * 2 1 3 31 31 H 1.09003 * 109.47249 * 119.99115 * 2 1 3 32 32 H 1.07998 * 120.08334 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.99824 * 359.73323 * 7 6 5 34 34 H 1.07995 * 120.00447 * 0.02562 * 8 7 6 35 35 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 37 37 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 38 38 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 39 39 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 40 40 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 41 41 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 42 42 H 0.96997 * 120.00125 * 180.02562 * 18 17 15 43 43 H 1.07993 * 120.00760 * 180.24801 * 23 6 5 44 44 H 1.07999 * 119.90497 * 180.02562 * 24 23 6 45 45 H 0.96709 * 113.99982 * 89.99827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1956 0.4302 -0.0043 6 6 5.5826 0.6175 0.0016 7 6 6.4833 -0.5442 0.0023 8 6 7.8207 -0.3613 0.0025 9 6 8.7168 -1.5172 0.0026 10 8 8.2566 -2.6440 0.0022 11 7 10.0521 -1.3345 0.0023 12 6 10.9498 -2.4923 0.0019 13 6 12.4023 -2.0115 0.0021 14 6 13.3398 -3.2206 0.0011 15 6 14.7704 -2.7470 0.0007 16 1 14.9892 -1.6894 0.0016 17 6 15.8002 -3.6640 0.0003 18 7 17.0486 -3.2507 -0.0005 19 14 15.4218 -5.4933 -0.0005 20 1 15.3216 -5.9774 -1.4008 21 1 16.5090 -6.2239 0.6992 22 1 14.1342 -5.7327 0.6994 23 6 6.1095 1.9141 0.0011 24 6 5.2632 3.0009 0.0005 25 6 3.8872 2.8141 0.0010 26 8 3.0578 3.8897 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.7841 -0.5683 -0.0089 33 1 6.0750 -1.5440 0.0027 34 1 8.2290 0.6385 0.0025 35 1 10.4189 -0.4365 0.0015 36 1 10.7666 -3.0944 0.8918 37 1 10.7661 -3.0942 -0.8882 38 1 12.5858 -1.4092 -0.8876 39 1 12.5857 -1.4099 0.8923 40 1 13.1564 -3.8233 0.8906 41 1 13.1562 -3.8219 -0.8894 42 1 17.7731 -3.8957 -0.0012 43 1 7.1792 2.0624 0.0016 44 1 5.6710 4.0010 -0.0003 45 1 2.8175 4.2002 -0.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182382120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:30 Heat of formation + Delta-G solvation = -93.054737 kcal Electronic energy + Delta-G solvation = -24512.665814 eV Core-core repulsion = 20688.566365 eV Total energy + Delta-G solvation = -3824.099449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88266 -39.60335 -38.43511 -37.37260 -35.59225 -33.63437 -33.31430 -32.24887 -31.50052 -30.72163 -28.95794 -27.24755 -24.79755 -24.26147 -22.86669 -22.18920 -21.31741 -20.59887 -19.50823 -19.08808 -17.69084 -17.55422 -16.76006 -16.69114 -16.53828 -15.79278 -15.56940 -15.38670 -15.02059 -14.51283 -14.27035 -14.09784 -14.00341 -13.68051 -13.58794 -13.15246 -12.97876 -12.72955 -12.63716 -12.47478 -12.05225 -11.96398 -11.92027 -11.74259 -11.36487 -11.10204 -10.97106 -10.91235 -10.31968 -10.25993 -10.00400 -9.80990 -9.63167 -9.24326 -9.08884 -8.88166 -8.56811 -8.31923 -6.07603 -4.06395 0.08396 0.89928 1.60892 2.64517 3.09579 3.30001 3.31094 3.37975 3.42099 3.43788 3.74395 4.24016 4.31229 4.40961 4.43256 4.50430 4.57310 4.72117 4.74532 4.88387 4.96865 5.00044 5.24133 5.26513 5.27576 5.30135 5.50302 5.52387 5.61222 5.63523 5.66758 5.80435 5.98908 6.02120 6.16535 6.22872 6.32583 6.42505 6.67811 6.75621 6.77115 7.21053 7.29023 7.34551 7.60819 7.75184 8.28114 8.48953 8.96162 9.54638 11.05618 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.001658 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.881471 B =16885.164719 C =17813.119064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.307 6.307 4 C 0.105 3.895 5 C -0.176 4.176 6 C -0.036 4.036 7 C -0.036 4.036 8 C -0.192 4.192 9 C 0.539 3.461 10 O -0.550 6.550 11 N -0.719 5.719 12 C 0.113 3.887 13 C -0.114 4.114 14 C -0.011 4.011 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.124 4.124 24 C -0.107 4.107 25 C 0.080 3.920 26 O -0.486 6.486 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.876 12.574 -1.625 35.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.221 6.221 4 C 0.059 3.941 5 C -0.195 4.195 6 C -0.036 4.036 7 C -0.055 4.055 8 C -0.213 4.213 9 C 0.327 3.673 10 O -0.430 6.430 11 N -0.368 5.368 12 C -0.010 4.010 13 C -0.152 4.152 14 C -0.049 4.049 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.142 4.142 24 C -0.125 4.125 25 C 0.035 3.965 26 O -0.295 6.295 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -33.106 11.777 -1.010 35.152 hybrid contribution 0.283 -0.687 -0.520 0.908 sum -32.822 11.089 -1.530 34.679 Atomic orbital electron populations 1.21766 0.92458 1.03021 1.03591 1.22872 0.96171 0.81827 1.01667 1.86156 1.18066 1.29361 1.88494 1.19284 0.83073 0.93461 0.98317 1.21357 0.92994 0.98303 1.06818 1.18844 0.92269 0.93103 0.99432 1.22284 0.92711 0.97740 0.92800 1.23086 0.94252 0.98785 1.05153 1.18278 0.82737 0.89226 0.77084 1.90814 1.76547 1.25137 1.50495 1.46072 1.05777 1.10952 1.74037 1.21678 0.89775 0.87485 1.02021 1.21710 0.91012 1.00658 1.01787 1.19507 0.95211 0.93545 0.96675 1.21098 0.88575 0.95253 1.51153 0.91000 1.25027 0.94941 0.99032 0.94445 1.69909 0.98690 1.34593 1.50961 0.86777 0.78363 0.85584 0.78588 1.20249 1.21344 1.18902 1.21258 1.00363 0.90999 1.01581 1.21205 0.91280 1.00133 0.99875 1.17928 0.88830 0.83970 1.05805 1.84848 1.66283 1.45097 1.33316 0.91501 0.90190 0.91421 0.91820 0.91777 0.84488 0.84544 0.85104 0.76476 0.91676 0.91681 0.92072 0.92037 0.96294 0.96733 0.92688 0.84589 0.84206 0.75711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.29 5.46 37.16 0.20 0.50 16 3 O -0.31 -2.72 9.91 -34.42 -0.34 -3.06 16 4 C 0.10 0.95 6.69 -39.19 -0.26 0.69 16 5 C -0.18 -1.48 8.78 -38.99 -0.34 -1.82 16 6 C -0.04 -0.32 5.87 -105.06 -0.62 -0.93 16 7 C -0.04 -0.35 9.45 -37.19 -0.35 -0.70 16 8 C -0.19 -1.94 9.41 -37.52 -0.35 -2.29 16 9 C 0.54 7.55 7.74 -13.04 -0.10 7.45 16 10 O -0.55 -9.84 16.23 5.17 0.08 -9.76 16 11 N -0.72 -9.63 5.55 -61.75 -0.34 -9.97 16 12 C 0.11 1.85 5.67 -4.04 -0.02 1.83 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C -0.12 -0.95 9.40 -39.12 -0.37 -1.32 16 24 C -0.11 -0.79 9.96 -39.53 -0.39 -1.19 16 25 C 0.08 0.70 6.72 -38.91 -0.26 0.44 16 26 O -0.49 -3.91 13.27 -33.86 -0.45 -4.36 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.05 16 32 H 0.14 0.93 6.28 -52.49 -0.33 0.60 16 33 H 0.14 1.40 7.52 -52.49 -0.39 1.01 16 34 H 0.13 0.93 6.06 -52.49 -0.32 0.61 16 35 H 0.40 4.19 8.45 -40.82 -0.34 3.84 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.14 0.79 6.15 -52.49 -0.32 0.47 16 44 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.39 1.35 9.06 45.56 0.41 1.76 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -35.57 381.98 -8.19 -43.76 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.83 Total: 0.91 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.17 Total: -13.41 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.43 Total: -36.85 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.71 Total: -17.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.57 -8.19 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.294 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds