Wall clock time and date at job start Tue Mar 31 2020 12:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47023 * 2 1 4 4 C 1.36001 * 116.99809 * 179.97438 * 3 2 1 5 5 C 1.38095 * 119.99151 * 0.25447 * 4 3 2 6 6 C 1.39957 * 119.82616 * 180.24854 * 5 4 3 7 7 C 1.47006 * 120.09489 * 179.73915 * 6 5 4 8 8 C 1.34983 * 119.99730 * 179.73100 * 7 6 5 9 9 C 1.46256 * 119.99532 * 180.02562 * 8 7 6 10 10 O 1.21719 * 120.00172 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99651 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00033 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 C 1.39957 * 119.80901 * 359.47364 * 6 5 4 24 24 C 1.37749 * 119.97287 * 0.27119 * 23 6 5 25 25 C 1.38859 * 120.17729 * 0.02562 * 24 23 6 26 26 O 1.35821 * 119.90268 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.46935 * 60.00493 * 1 2 3 28 28 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00364 * 1 2 3 30 30 H 1.08998 * 109.47630 * 239.99636 * 2 1 3 31 31 H 1.09003 * 109.47249 * 119.99115 * 2 1 3 32 32 H 1.07998 * 120.08334 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.99824 * 359.73323 * 7 6 5 34 34 H 1.07995 * 120.00447 * 0.02562 * 8 7 6 35 35 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 37 37 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 38 38 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 39 39 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 40 40 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 41 41 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 42 42 H 0.96997 * 120.00125 * 180.02562 * 18 17 15 43 43 H 1.07993 * 120.00760 * 180.24801 * 23 6 5 44 44 H 1.07999 * 119.90497 * 180.02562 * 24 23 6 45 45 H 0.96709 * 113.99982 * 89.99827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1956 0.4302 -0.0043 6 6 5.5826 0.6175 0.0016 7 6 6.4833 -0.5442 0.0023 8 6 7.8207 -0.3613 0.0025 9 6 8.7168 -1.5172 0.0026 10 8 8.2566 -2.6440 0.0022 11 7 10.0521 -1.3345 0.0023 12 6 10.9498 -2.4923 0.0019 13 6 12.4023 -2.0115 0.0021 14 6 13.3398 -3.2206 0.0011 15 6 14.7704 -2.7470 0.0007 16 1 14.9892 -1.6894 0.0016 17 6 15.8002 -3.6640 0.0003 18 7 17.0486 -3.2507 -0.0005 19 14 15.4218 -5.4933 -0.0005 20 1 15.3216 -5.9774 -1.4008 21 1 16.5090 -6.2239 0.6992 22 1 14.1342 -5.7327 0.6994 23 6 6.1095 1.9141 0.0011 24 6 5.2632 3.0009 0.0005 25 6 3.8872 2.8141 0.0010 26 8 3.0578 3.8897 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.7841 -0.5683 -0.0089 33 1 6.0750 -1.5440 0.0027 34 1 8.2290 0.6385 0.0025 35 1 10.4189 -0.4365 0.0015 36 1 10.7666 -3.0944 0.8918 37 1 10.7661 -3.0942 -0.8882 38 1 12.5858 -1.4092 -0.8876 39 1 12.5857 -1.4099 0.8923 40 1 13.1564 -3.8233 0.8906 41 1 13.1562 -3.8219 -0.8894 42 1 17.7731 -3.8957 -0.0012 43 1 7.1792 2.0624 0.0016 44 1 5.6710 4.0010 -0.0003 45 1 2.8175 4.2002 -0.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182382120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:29 Heat of formation + Delta-G solvation = -117.760387 kcal Electronic energy + Delta-G solvation = -24513.737132 eV Core-core repulsion = 20688.566365 eV Total energy + Delta-G solvation = -3825.170767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47168 -40.70203 -39.00844 -38.00868 -37.00243 -35.14069 -34.38436 -33.27107 -32.68528 -31.35073 -29.82898 -28.73261 -25.72460 -24.93472 -24.15772 -22.75575 -22.29642 -22.12117 -20.51471 -19.67410 -18.97678 -18.43264 -18.23068 -17.28795 -17.19192 -16.74578 -16.68681 -16.38170 -16.15555 -15.70940 -15.38586 -15.12207 -14.83257 -14.72039 -14.59351 -14.15275 -13.83036 -13.70259 -13.65899 -13.42869 -13.18547 -13.03340 -12.73823 -12.69990 -12.61237 -12.24784 -11.92934 -11.83701 -11.78316 -11.59242 -11.53217 -11.32933 -11.00845 -10.99970 -10.75944 -10.11406 -9.65834 -8.96344 -8.29190 -6.33003 -0.61251 0.31926 0.85818 1.36889 1.38666 1.50334 2.13296 2.23330 2.25597 2.36492 2.71789 3.06667 3.19747 3.53455 3.73156 3.99444 4.01174 4.01746 4.08333 4.14430 4.21008 4.24580 4.26366 4.34470 4.50340 4.50835 4.75667 4.85281 4.88586 4.89178 4.90781 4.92138 5.03711 5.05471 5.19456 5.24768 5.30036 5.39300 5.51135 5.55569 5.56326 5.63154 5.65573 6.23883 6.27715 6.59439 6.75230 6.84193 7.23755 7.31915 8.87160 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.001658 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.881471 B =16885.164719 C =17813.119064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.324 6.324 4 C 0.087 3.913 5 C -0.178 4.178 6 C -0.051 4.051 7 C -0.022 4.022 8 C -0.198 4.198 9 C 0.536 3.464 10 O -0.596 6.596 11 N -0.710 5.710 12 C 0.126 3.874 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.531 4.531 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.248 1.248 23 C -0.119 4.119 24 C -0.108 4.108 25 C 0.073 3.927 26 O -0.500 6.500 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.417 0.583 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.266 0.734 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.485 12.849 -1.768 36.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.238 6.238 4 C 0.041 3.959 5 C -0.196 4.196 6 C -0.051 4.051 7 C -0.042 4.042 8 C -0.218 4.218 9 C 0.327 3.673 10 O -0.479 6.479 11 N -0.361 5.361 12 C 0.001 3.999 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.569 4.569 16 H 0.057 0.943 17 C -0.192 4.192 18 N -0.591 5.591 19 Si 0.770 3.230 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.172 1.172 23 C -0.137 4.137 24 C -0.126 4.126 25 C 0.028 3.972 26 O -0.312 6.312 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.183 0.817 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.176 0.824 44 H 0.179 0.821 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -34.729 12.098 -1.165 36.795 hybrid contribution 0.709 -0.645 -0.486 1.075 sum -34.020 11.453 -1.651 35.935 Atomic orbital electron populations 1.21789 0.91407 1.04116 1.03241 1.23090 0.97060 0.80903 1.02213 1.86136 1.18082 1.30930 1.88649 1.19475 0.83342 0.93914 0.99177 1.21498 0.93055 0.98766 1.06319 1.18842 0.92149 0.93250 1.00871 1.22293 0.92876 0.97761 0.91277 1.23014 0.93538 0.98649 1.06629 1.18848 0.82929 0.89689 0.75845 1.90793 1.77208 1.27195 1.52692 1.45885 1.05480 1.10970 1.73732 1.21313 0.88906 0.88271 1.01360 1.21484 0.91320 0.98738 1.02302 1.19478 0.93339 0.95513 0.96791 1.21475 0.91305 0.93892 1.50254 0.94346 1.25974 0.94662 1.04305 0.94221 1.70055 0.99905 1.36409 1.52684 0.85709 0.78805 0.79292 0.79169 1.19262 1.21025 1.17181 1.21532 1.01551 0.90395 1.00228 1.21446 0.90715 1.01174 0.99293 1.18210 0.89542 0.84046 1.05410 1.84785 1.66360 1.44916 1.35127 0.91592 0.88370 0.91986 0.91002 0.91472 0.83582 0.85637 0.81725 0.74559 0.92498 0.92373 0.91550 0.91603 0.96139 0.96219 0.92524 0.82420 0.82114 0.73585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.04 0.47 5.46 71.98 0.39 0.86 16 3 O -0.32 -5.56 9.91 -79.52 -0.79 -6.35 16 4 C 0.09 1.50 6.69 22.52 0.15 1.65 16 5 C -0.18 -2.81 8.78 22.65 0.20 -2.61 16 6 C -0.05 -0.80 5.87 -20.15 -0.12 -0.92 16 7 C -0.02 -0.40 9.45 23.82 0.23 -0.17 16 8 C -0.20 -3.56 9.41 23.61 0.22 -3.33 16 9 C 0.54 14.26 7.74 86.33 0.67 14.93 16 10 O -0.60 -21.05 16.23 -4.41 -0.07 -21.13 16 11 N -0.71 -17.66 5.55 -467.49 -2.60 -20.26 16 12 C 0.13 3.92 5.67 86.38 0.49 4.41 16 13 C -0.10 -3.56 5.27 30.59 0.16 -3.40 16 14 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 15 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 16 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 17 C 0.01 0.31 5.47 84.66 0.46 0.77 16 18 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 19 Si 0.95 44.26 27.47 68.60 1.88 46.15 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 23 C -0.12 -1.50 9.40 22.57 0.21 -1.29 16 24 C -0.11 -1.35 9.96 22.30 0.22 -1.13 16 25 C 0.07 1.17 6.72 22.71 0.15 1.33 16 26 O -0.50 -7.39 13.27 -77.51 -1.03 -8.42 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 31 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 32 H 0.15 1.88 6.28 -2.91 -0.02 1.86 16 33 H 0.13 2.52 7.52 -2.91 -0.02 2.49 16 34 H 0.17 1.73 6.06 -2.91 -0.02 1.71 16 35 H 0.42 7.62 8.45 -92.71 -0.78 6.84 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 41 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 43 H 0.16 1.21 6.15 -2.91 -0.02 1.20 16 44 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.41 2.30 9.06 -74.05 -0.67 1.63 16 Total: -1.00 -77.38 381.98 1.76 -75.62 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -0.49 Total: 12.83 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 4.55 Total: -19.58 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.30 Total: -79.11 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.89 Total: -35.90 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -77.38 1.76 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182382120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.137 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds