Wall clock time and date at job start Tue Mar 31 2020 12:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47119 * 2 1 4 4 C 1.35829 * 117.00023 * 180.02562 * 3 2 1 5 5 C 1.38863 * 119.90205 * 0.02562 * 4 3 2 6 6 C 1.37747 * 120.17336 * 179.97438 * 5 4 3 7 7 C 1.39955 * 119.97657 * 0.02562 * 6 5 4 8 8 C 1.46998 * 120.09691 * 179.97438 * 7 6 5 9 9 C 1.34981 * 119.99935 * 359.97438 * 8 7 6 10 10 C 1.46257 * 120.00249 * 179.72340 * 9 8 7 11 11 O 1.21727 * 119.99618 * 0.28217 * 10 9 8 12 12 N 1.34770 * 120.00412 * 180.27273 * 10 9 8 13 13 C 1.46501 * 120.00328 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46542 * 35.00257 * 13 12 10 15 15 C 1.52999 * 109.46906 * 275.00474 * 13 12 10 16 16 C 1.50692 * 109.47109 * 155.00152 * 13 12 10 17 17 H 1.08000 * 120.00290 * 5.46136 * 16 13 12 18 18 C 1.37883 * 120.00227 * 185.46093 * 16 13 12 19 19 N 1.31515 * 119.99511 * 9.55973 * 18 16 13 20 20 Si 1.86795 * 120.00243 * 189.56136 * 18 16 13 21 21 H 1.48497 * 109.47022 * 84.99795 * 20 18 16 22 22 H 1.48507 * 109.46843 * 204.99322 * 20 18 16 23 23 H 1.48497 * 109.47127 * 324.99237 * 20 18 16 24 24 C 1.39966 * 119.80881 * 0.24782 * 7 6 5 25 25 C 1.38101 * 119.82294 * 359.51878 * 24 7 6 26 26 O 1.35994 * 119.98304 * 180.25432 * 25 24 7 27 27 C 1.42895 * 117.00420 * 0.20591 * 26 25 24 28 28 H 1.09009 * 109.47043 * 299.99322 * 1 2 3 29 29 H 1.08999 * 109.47399 * 59.99525 * 1 2 3 30 30 H 1.08997 * 109.47628 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47043 * 240.00678 * 2 1 3 32 32 H 1.08999 * 109.47399 * 120.00475 * 2 1 3 33 33 H 1.07996 * 119.91572 * 359.97438 * 5 4 3 34 34 H 1.07992 * 120.01444 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.99789 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.00275 * 0.02562 * 9 8 7 37 37 H 0.97007 * 119.99721 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47289 * 303.67464 * 15 13 12 39 39 H 1.08999 * 109.47243 * 63.67573 * 15 13 12 40 40 H 1.09007 * 109.46547 * 183.67712 * 15 13 12 41 41 H 0.97005 * 120.00196 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.08476 * 179.74623 * 24 7 6 43 43 H 1.09006 * 109.47063 * 60.00886 * 27 26 25 44 44 H 1.09005 * 109.46991 * 179.97438 * 27 26 25 45 45 H 1.08995 * 109.47369 * 300.00502 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5253 -0.0005 5 6 4.1969 0.4226 -0.0016 6 6 5.5633 0.5966 -0.0027 7 6 6.1038 1.8875 -0.0022 8 6 7.5616 2.0763 -0.0028 9 6 8.3810 1.0037 -0.0033 10 6 9.8315 1.1914 -0.0100 11 8 10.2997 2.3150 -0.0099 12 7 10.6497 0.1205 -0.0160 13 6 12.1025 0.3085 -0.0222 14 1 12.3574 1.1888 0.5682 15 6 12.5856 0.5020 -1.4610 16 6 12.7687 -0.9053 0.5725 17 1 12.1780 -1.7693 0.8389 18 6 14.1323 -0.9129 0.7766 19 7 14.8250 0.1956 0.6315 20 14 14.9957 -2.4975 1.2591 21 1 15.3176 -3.2776 0.0372 22 1 16.2502 -2.1761 1.9859 23 1 14.1058 -3.2984 2.1377 24 6 5.2523 2.9984 0.0047 25 6 3.8836 2.8146 0.0009 26 8 3.0532 3.8916 0.0023 27 6 3.6654 5.1828 0.0032 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.7809 -0.5741 -0.0016 34 1 6.2173 -0.2628 -0.0039 35 1 7.9770 3.0733 -0.0028 36 1 7.9657 0.0067 -0.0037 37 1 10.2765 -0.7749 -0.0163 38 1 12.2736 -0.3489 -2.0665 39 1 12.1544 1.4160 -1.8692 40 1 13.6731 0.5766 -1.4721 41 1 15.7844 0.1903 0.7747 42 1 5.6646 3.9965 0.0092 43 1 4.2848 5.2919 -0.8871 44 1 2.8924 5.9514 0.0038 45 1 4.2858 5.2902 0.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194665096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:17 Heat of formation + Delta-G solvation = -77.925082 kcal Electronic energy + Delta-G solvation = -25377.855294 eV Core-core repulsion = 21554.411916 eV Total energy + Delta-G solvation = -3823.443378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79520 -38.91114 -38.79247 -37.43496 -34.83958 -33.41371 -32.33794 -31.89269 -30.67897 -29.53383 -28.61405 -27.19335 -25.22659 -24.38235 -23.93035 -22.06930 -21.48688 -20.07188 -19.20765 -18.77689 -17.47315 -17.15545 -16.55667 -16.44960 -15.89818 -15.74258 -15.19712 -15.05556 -14.62613 -14.44043 -14.24520 -13.99423 -13.60397 -13.42013 -13.01072 -12.94601 -12.56576 -12.50958 -12.35744 -12.25712 -11.83780 -11.81632 -11.52448 -11.48424 -11.15808 -11.09946 -11.04507 -11.01783 -10.76144 -10.36243 -10.27478 -9.73655 -9.13335 -9.06663 -8.79398 -8.49960 -7.96224 -7.68830 -6.14167 -4.19599 0.56200 1.12319 2.10251 2.87825 3.01605 3.25297 3.31870 3.33326 3.55282 4.05716 4.10203 4.37437 4.44330 4.55881 4.63578 4.71854 4.75369 4.85618 4.92281 4.94344 5.03226 5.07436 5.19534 5.21552 5.26078 5.30121 5.41697 5.43142 5.64101 5.66233 5.89768 5.98002 6.06021 6.38564 6.50410 6.62801 6.77524 6.80752 6.90560 7.08931 7.32392 7.43705 7.57431 7.68390 7.86177 8.07193 8.68838 8.80219 9.14386 9.46386 10.94394 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002125 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.174853 B =13172.834790 C =14246.546617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.105 3.895 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.058 4.058 8 C -0.048 4.048 9 C -0.185 4.185 10 C 0.528 3.472 11 O -0.559 6.559 12 N -0.701 5.701 13 C 0.261 3.739 14 H 0.056 0.944 15 C -0.141 4.141 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.154 4.154 25 C 0.097 3.903 26 O -0.308 6.308 27 C 0.025 3.975 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.389 0.611 38 H 0.028 0.972 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.265 0.735 42 H 0.140 0.860 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.106 1.556 -2.003 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.219 6.219 4 C 0.059 3.941 5 C -0.193 4.193 6 C -0.118 4.118 7 C -0.058 4.058 8 C -0.068 4.068 9 C -0.206 4.206 10 C 0.315 3.685 11 O -0.441 6.441 12 N -0.348 5.348 13 C 0.159 3.841 14 H 0.074 0.926 15 C -0.200 4.200 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.518 5.518 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.173 4.173 25 C 0.051 3.949 26 O -0.222 6.222 27 C -0.071 4.071 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.222 0.778 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.893 2.558 -1.985 27.087 hybrid contribution 0.745 -1.445 0.235 1.642 sum -26.148 1.113 -1.750 26.230 Atomic orbital electron populations 1.21760 0.92711 1.02778 1.03583 1.22814 0.95980 0.82112 1.01422 1.86124 1.18191 1.28905 1.88699 1.18360 0.83061 0.91115 1.01560 1.20986 0.93833 0.97432 1.07023 1.21170 0.94254 0.96870 0.99526 1.18771 0.92874 0.92473 1.01693 1.22171 0.90131 0.99989 0.94475 1.23244 0.94017 0.99398 1.03944 1.18239 0.86636 0.85572 0.78007 1.90770 1.77762 1.23905 1.51631 1.46444 1.09468 1.07457 1.71413 1.18771 0.73155 0.98556 0.93617 0.92604 1.22009 1.02675 0.97275 0.98008 1.21168 0.92777 1.00335 1.43198 0.92061 1.24904 0.97386 0.96416 0.94916 1.69988 1.07687 1.25786 1.48295 0.86509 0.79021 0.83300 0.78549 1.20422 1.21173 1.19912 1.21267 0.90793 0.99952 1.05285 1.18079 0.88762 0.85439 1.02593 1.86157 1.33778 1.13075 1.89187 1.23095 0.99962 0.82457 1.01550 0.91510 0.91509 0.90382 0.91986 0.91975 0.84563 0.84773 0.84766 0.85819 0.77843 0.95246 0.96115 0.90874 0.92548 0.84193 0.92527 0.88209 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.15 0.38 -0.46 16 2 C 0.05 0.37 5.45 37.15 0.20 0.58 16 3 O -0.31 -3.39 9.91 -33.88 -0.34 -3.73 16 4 C 0.10 1.21 6.71 -38.91 -0.26 0.95 16 5 C -0.17 -1.74 9.01 -39.53 -0.36 -2.10 16 6 C -0.10 -1.08 9.40 -39.12 -0.37 -1.45 16 7 C -0.06 -0.70 5.87 -105.06 -0.62 -1.32 16 8 C -0.05 -0.67 9.45 -37.19 -0.35 -1.02 16 9 C -0.19 -2.80 9.40 -37.52 -0.35 -3.16 16 10 C 0.53 10.79 7.70 -13.04 -0.10 10.69 16 11 O -0.56 -13.65 15.89 5.16 0.08 -13.57 16 12 N -0.70 -14.79 5.06 -56.38 -0.29 -15.08 16 13 C 0.26 6.71 2.42 -69.09 -0.17 6.54 16 14 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 15 C -0.14 -3.48 9.36 37.16 0.35 -3.14 16 16 C -0.54 -14.29 8.66 -34.44 -0.30 -14.59 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.83 5.17 -17.82 -0.09 1.74 16 19 N -0.88 -25.18 12.16 55.43 0.67 -24.51 16 20 Si 0.90 20.66 29.55 -169.99 -5.02 15.64 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.15 -1.75 8.78 -38.98 -0.34 -2.09 16 25 C 0.10 1.16 6.69 -39.19 -0.26 0.89 16 26 O -0.31 -3.55 10.27 -34.40 -0.35 -3.91 16 27 C 0.02 0.18 9.81 101.05 0.99 1.17 16 28 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 7.65 -51.92 -0.40 -0.02 16 32 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 33 H 0.14 1.01 6.27 -52.49 -0.33 0.68 16 34 H 0.13 1.23 6.15 -52.49 -0.32 0.91 16 35 H 0.13 1.97 7.52 -52.49 -0.39 1.57 16 36 H 0.12 1.47 6.06 -52.49 -0.32 1.16 16 37 H 0.39 6.98 8.50 -40.82 -0.35 6.63 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.14 1.33 6.28 -52.49 -0.33 1.00 16 43 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -33.49 379.01 -7.63 -41.12 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.45 Total: 5.07 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.64 Total: -6.75 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.39 Total: -39.59 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.61 Total: -21.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.49 -7.63 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194665096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.807 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds