Wall clock time and date at job start Tue Mar 31 2020 12:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47080 * 2 1 4 4 C 1.35829 * 116.99969 * 179.97438 * 3 2 1 5 5 C 1.38865 * 119.90154 * 0.26122 * 4 3 2 6 6 C 1.37737 * 120.17682 * 180.29113 * 5 4 3 7 7 C 1.39997 * 119.97171 * 359.72263 * 6 5 4 8 8 C 1.46946 * 120.09611 * 179.97438 * 7 6 5 9 9 C 1.35130 * 120.00389 * 44.28465 * 8 7 6 10 10 C 1.41807 * 119.99891 * 10.22612 * 9 8 7 11 11 O 1.21779 * 119.99752 * 6.56729 * 10 9 8 12 12 N 1.34778 * 119.99986 * 186.57560 * 10 9 8 13 13 C 1.46508 * 120.00155 * 359.97438 * 12 10 9 14 14 C 1.36751 * 119.99932 * 180.02562 * 12 10 9 15 15 H 1.08000 * 120.00178 * 28.31357 * 14 12 10 16 16 C 1.39087 * 119.99417 * 208.31459 * 14 12 10 17 17 N 1.31339 * 120.00803 * 8.32266 * 16 14 12 18 18 Si 1.86810 * 119.99573 * 188.32243 * 16 14 12 19 19 H 1.48499 * 109.47065 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47005 * 119.99847 * 18 16 14 21 21 H 1.48497 * 109.47217 * 240.00094 * 18 16 14 22 22 C 1.39993 * 119.80257 * 0.02562 * 7 6 5 23 23 C 1.38082 * 119.82580 * 359.97438 * 22 7 6 24 24 O 1.35993 * 119.98944 * 180.02562 * 23 22 7 25 25 C 1.42900 * 117.00015 * 0.02562 * 24 23 22 26 26 C 1.52998 * 109.47026 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46602 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.46988 * 299.99975 * 1 2 3 29 29 H 1.09004 * 109.46759 * 60.00480 * 1 2 3 30 30 H 1.09002 * 109.47612 * 239.99901 * 2 1 3 31 31 H 1.09005 * 109.46825 * 120.00068 * 2 1 3 32 32 H 1.07997 * 119.91456 * 359.97438 * 5 4 3 33 33 H 1.08000 * 120.01921 * 179.74313 * 6 5 4 34 34 H 1.08006 * 119.99693 * 224.28595 * 8 7 6 35 35 H 1.08002 * 120.00521 * 190.22493 * 9 8 7 36 36 H 1.09001 * 109.46677 * 84.43896 * 13 12 10 37 37 H 1.08994 * 109.46939 * 204.43999 * 13 12 10 38 38 H 1.09004 * 109.46758 * 324.44497 * 13 12 10 39 39 H 0.97000 * 120.00567 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.08415 * 179.97438 * 22 7 6 41 41 H 1.09004 * 109.46986 * 59.99766 * 25 24 23 42 42 H 1.09000 * 109.46955 * 300.00134 * 25 24 23 43 43 H 1.08996 * 109.46919 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.47207 * 299.99789 * 26 25 24 45 45 H 1.08994 * 109.47710 * 60.00082 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3529 1.5252 0.0005 5 6 4.1970 0.4225 -0.0044 6 6 5.5633 0.5964 0.0021 7 6 6.1040 1.8877 0.0080 8 6 7.5613 2.0764 0.0156 9 6 8.3429 1.3344 -0.7995 10 6 7.7540 0.5340 -1.8112 11 8 6.5571 0.6057 -2.0245 12 7 8.5187 -0.3061 -2.5364 13 6 9.9586 -0.3920 -2.2800 14 6 7.9508 -1.0775 -3.5123 15 1 7.0620 -0.7358 -4.0219 16 6 8.5179 -2.3022 -3.8486 17 7 9.4967 -2.7939 -3.1239 18 14 7.8874 -3.2478 -5.3312 19 1 6.7879 -2.4843 -5.9742 20 1 8.9932 -3.4382 -6.3037 21 1 7.3792 -4.5728 -4.8937 22 6 5.2522 2.9987 0.0077 23 6 3.8837 2.8148 0.0011 24 8 3.0531 3.8917 0.0002 25 6 3.6651 5.1830 0.0058 26 6 2.5800 6.2616 0.0046 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7810 -0.5741 -0.0083 33 1 6.2173 -0.2630 0.0024 34 1 8.0076 2.8082 0.6727 35 1 9.4163 1.3509 -0.6806 36 1 10.1408 -1.0869 -1.4602 37 1 10.4668 -0.7466 -3.1766 38 1 10.3393 0.5937 -2.0121 39 1 9.8924 -3.6479 -3.3586 40 1 5.6644 3.9969 0.0126 41 1 4.2888 5.2933 -0.8814 42 1 4.2814 5.2891 0.8986 43 1 3.0468 7.2465 0.0084 44 1 1.9634 6.1557 -0.8880 45 1 1.9568 6.1511 0.8919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207791076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:59 Heat of formation + Delta-G solvation = -44.520870 kcal Electronic energy + Delta-G solvation = -26990.328433 eV Core-core repulsion = 23168.333570 eV Total energy + Delta-G solvation = -3821.994863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15358 -38.83732 -38.28571 -36.65303 -34.70391 -32.80749 -31.88843 -31.49360 -31.29951 -29.63350 -28.00188 -26.39458 -24.94316 -24.14415 -23.01345 -22.85716 -20.98075 -20.66610 -18.51782 -17.79373 -17.06717 -16.67772 -16.36025 -16.08104 -15.72789 -15.59205 -14.79112 -14.49241 -14.25147 -13.89153 -13.67566 -13.40644 -13.37110 -13.09787 -12.70503 -12.58153 -12.53744 -12.44362 -12.22587 -11.81923 -11.59782 -11.54052 -11.45627 -11.29468 -11.24325 -10.95277 -10.81981 -10.53874 -10.52577 -10.51078 -10.36992 -10.24425 -9.12400 -8.80686 -8.35637 -8.13489 -7.61584 -6.80223 -6.42389 -3.93874 1.34973 1.97771 2.49833 3.12999 3.20287 3.27425 3.49363 3.51198 4.07980 4.36032 4.45386 4.96711 4.98874 5.02419 5.03202 5.07745 5.14160 5.26757 5.29651 5.30200 5.34886 5.47753 5.56662 5.71303 5.73961 5.79653 5.84109 5.85947 5.90756 6.01224 6.05049 6.06323 6.17902 6.35936 6.54779 6.76337 6.77929 6.86338 6.98031 7.13840 7.21120 7.27117 7.45712 7.46415 8.03226 8.13410 8.45606 9.15392 9.35394 10.00994 10.60397 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.003711 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.550567 B = 7543.441407 C = 8914.154672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.311 6.311 4 C 0.101 3.899 5 C -0.187 4.187 6 C -0.009 4.009 7 C -0.043 4.043 8 C -0.078 4.078 9 C -0.173 4.173 10 C 0.455 3.545 11 O -0.576 6.576 12 N -0.430 5.430 13 C 0.107 3.893 14 C -0.296 4.296 15 H 0.099 0.901 16 C 0.031 3.969 17 N -0.874 5.874 18 Si 0.927 3.073 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.159 4.159 23 C 0.075 3.925 24 O -0.312 6.312 25 C 0.055 3.945 26 C -0.149 4.149 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 9.435 8.234 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.225 6.225 4 C 0.056 3.944 5 C -0.206 4.206 6 C -0.027 4.027 7 C -0.044 4.044 8 C -0.100 4.100 9 C -0.194 4.194 10 C 0.247 3.753 11 O -0.464 6.464 12 N -0.146 5.146 13 C -0.037 4.037 14 C -0.424 4.424 15 H 0.117 0.883 16 C -0.174 4.174 17 N -0.512 5.512 18 Si 0.753 3.247 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.178 4.178 23 C 0.030 3.970 24 O -0.227 6.227 25 C -0.021 4.021 26 C -0.206 4.206 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.183 9.386 8.057 14.831 hybrid contribution 0.567 -0.842 -0.866 1.334 sum -7.616 8.544 7.191 13.517 Atomic orbital electron populations 1.21739 0.93253 1.02374 1.03207 1.22711 0.95372 0.82767 1.01369 1.86043 1.18915 1.28219 1.89342 1.18199 0.82369 0.91089 1.02771 1.20789 0.94064 0.96759 1.08978 1.20804 0.93544 0.96280 0.92109 1.18461 0.92481 0.92388 1.01049 1.21962 0.91842 0.97711 0.98437 1.22420 0.99908 0.99348 0.97770 1.16970 0.87154 0.86099 0.85069 1.90725 1.14168 1.71122 1.70348 1.43703 1.06477 1.34378 1.30046 1.21567 0.82319 0.97070 1.02769 1.19735 1.11832 0.98663 1.12198 0.88306 1.25467 0.96560 0.96472 0.98866 1.69935 1.24617 1.19225 1.37453 0.85847 0.78899 0.79295 0.80656 1.19073 1.20564 1.20573 1.20939 0.90852 0.98900 1.07110 1.17784 0.88598 0.84706 1.05896 1.86096 1.34048 1.12506 1.90031 1.22657 0.96464 0.81949 1.00999 1.21736 0.98967 0.96629 1.03289 0.90734 0.91819 0.91697 0.92068 0.92402 0.85615 0.86181 0.86124 0.86260 0.92866 0.90763 0.95270 0.92049 0.85659 0.92417 0.92576 0.90812 0.91695 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.72 5.46 37.16 0.20 0.92 16 3 O -0.31 -5.43 9.91 -33.88 -0.34 -5.77 16 4 C 0.10 1.90 6.71 -38.90 -0.26 1.64 16 5 C -0.19 -3.54 9.01 -39.53 -0.36 -3.90 16 6 C -0.01 -0.17 6.58 -39.11 -0.26 -0.43 16 7 C -0.04 -0.82 4.50 -105.05 -0.47 -1.29 16 8 C -0.08 -1.33 9.80 -37.16 -0.36 -1.70 16 9 C -0.17 -3.33 9.01 -39.32 -0.35 -3.68 16 10 C 0.45 10.99 6.49 -14.90 -0.10 10.89 16 11 O -0.58 -15.40 11.66 5.12 0.06 -15.34 16 12 N -0.43 -10.89 2.99 -125.40 -0.38 -11.26 16 13 C 0.11 2.33 8.29 59.85 0.50 2.83 16 14 C -0.30 -8.11 9.16 -15.04 -0.14 -8.24 16 15 H 0.10 2.86 7.50 -52.49 -0.39 2.46 16 16 C 0.03 0.79 5.12 -17.45 -0.09 0.71 16 17 N -0.87 -22.78 10.85 55.50 0.60 -22.18 16 18 Si 0.93 20.44 29.56 -169.99 -5.03 15.42 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.16 -2.78 8.78 -38.98 -0.34 -3.13 16 23 C 0.07 1.37 6.69 -39.19 -0.26 1.11 16 24 O -0.31 -5.27 9.91 -34.39 -0.34 -5.61 16 25 C 0.05 0.68 5.46 37.16 0.20 0.88 16 26 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.84 7.64 -51.93 -0.40 0.45 16 31 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.13 2.13 6.27 -52.49 -0.33 1.80 16 33 H 0.12 2.60 7.01 -52.49 -0.37 2.23 16 34 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.12 1.97 6.15 -52.49 -0.32 1.64 16 36 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 37 H 0.07 1.71 6.86 -51.93 -0.36 1.36 16 38 H 0.03 0.53 6.33 -51.93 -0.33 0.20 16 39 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.13 1.83 6.28 -52.49 -0.33 1.50 16 41 H 0.06 0.70 7.66 -51.93 -0.40 0.31 16 42 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -32.07 367.90 -7.72 -39.79 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.52 Total: 5.04 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.33 Total: -5.63 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.23 Total: -33.45 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.62 Total: -26.72 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.07 -7.72 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207791076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.732 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds