Wall clock time and date at job start Tue Mar 31 2020 12:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46867 * 2 1 4 4 C 1.36002 * 116.99698 * 179.97438 * 3 2 1 5 5 C 1.38092 * 119.98989 * 0.02562 * 4 3 2 6 6 C 1.39963 * 119.82612 * 180.02562 * 5 4 3 7 7 C 1.46999 * 120.09480 * 180.02562 * 6 5 4 8 8 C 1.34982 * 120.00328 * 131.88947 * 7 6 5 9 9 C 1.46251 * 119.99749 * 348.77011 * 8 7 6 10 10 O 1.21724 * 120.00155 * 353.27928 * 9 8 7 11 11 N 1.34780 * 119.99893 * 173.28274 * 9 8 7 12 12 C 1.46500 * 120.00231 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99713 * 179.97438 * 11 9 8 14 14 H 1.08993 * 109.47673 * 0.02562 * 13 11 9 15 15 C 1.53004 * 109.46948 * 239.99801 * 13 11 9 16 16 C 1.50709 * 109.47011 * 120.00082 * 13 11 9 17 17 H 1.08001 * 119.99644 * 0.02562 * 16 13 11 18 18 C 1.37877 * 120.00089 * 179.97438 * 16 13 11 19 19 N 1.31508 * 119.99673 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99838 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47308 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47155 * 120.00070 * 20 18 16 23 23 H 1.48501 * 109.46643 * 239.99914 * 20 18 16 24 24 C 1.39950 * 119.80892 * 359.97438 * 6 5 4 25 25 C 1.37749 * 119.97770 * 0.02562 * 24 6 5 26 26 C 1.38861 * 120.17389 * 359.72243 * 25 24 6 27 27 O 1.35822 * 119.90915 * 180.29492 * 26 25 24 28 28 H 1.09001 * 109.47106 * 60.00101 * 1 2 3 29 29 H 1.09005 * 109.47042 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47569 * 299.99979 * 1 2 3 31 31 H 1.09001 * 109.47106 * 119.99899 * 2 1 3 32 32 H 1.09002 * 109.47112 * 240.00078 * 2 1 3 33 33 H 1.07994 * 120.08756 * 0.02562 * 5 4 3 34 34 H 1.08002 * 119.99896 * 311.88408 * 7 6 5 35 35 H 1.07999 * 120.00249 * 168.76962 * 8 7 6 36 36 H 1.08994 * 109.47428 * 89.99876 * 12 11 9 37 37 H 1.08994 * 109.47307 * 210.00260 * 12 11 9 38 38 H 1.09008 * 109.46494 * 329.99588 * 12 11 9 39 39 H 1.08999 * 109.47172 * 300.00081 * 15 13 11 40 40 H 1.08994 * 109.47277 * 60.00714 * 15 13 11 41 41 H 1.09002 * 109.46520 * 180.02562 * 15 13 11 42 42 H 0.97010 * 119.99860 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.01453 * 179.97438 * 24 6 5 44 44 H 1.08004 * 119.91366 * 179.97438 * 25 24 6 45 45 H 0.96697 * 114.00158 * 270.25368 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1955 0.4302 0.0005 6 6 5.5826 0.6175 0.0016 7 6 6.4833 -0.5442 0.0010 8 6 7.5143 -0.5985 -0.8685 9 6 7.5966 0.3646 -1.9661 10 8 6.6769 1.1356 -2.1696 11 7 8.6909 0.3984 -2.7522 12 6 9.7975 -0.5299 -2.5077 13 6 8.7731 1.3628 -3.8520 14 1 7.8637 1.9631 -3.8777 15 6 8.9279 0.6134 -5.1769 16 6 9.9631 2.2636 -3.6423 17 1 10.5951 2.1306 -2.7767 18 6 10.2455 3.2566 -4.5561 19 7 9.4768 3.4175 -5.6109 20 14 11.7209 4.3726 -4.2965 21 1 12.4188 3.9872 -3.0437 22 1 12.6526 4.2364 -5.4447 23 1 11.2637 5.7818 -4.1945 24 6 6.1095 1.9140 0.0022 25 6 5.2632 3.0009 0.0022 26 6 3.8872 2.8141 -0.0042 27 8 3.0578 3.8896 -0.0102 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.7841 -0.5683 -0.0003 34 1 6.3202 -1.3543 0.6965 35 1 8.2783 -1.3531 -0.7538 36 1 9.6384 -1.4437 -3.0800 37 1 10.7349 -0.0669 -2.8157 38 1 9.8426 -0.7696 -1.4453 39 1 9.8376 0.0135 -5.1509 40 1 8.0673 -0.0379 -5.3286 41 1 8.9895 1.3311 -5.9950 42 1 9.6752 4.1165 -6.2537 43 1 7.1793 2.0624 0.0035 44 1 5.6710 4.0010 0.0031 45 1 2.8164 4.2051 0.8714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255123826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:40 Heat of formation + Delta-G solvation = -82.399651 kcal Electronic energy + Delta-G solvation = -27022.940428 eV Core-core repulsion = 23199.303018 eV Total energy + Delta-G solvation = -3823.637410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46130 -40.63620 -38.89009 -37.96199 -36.83933 -34.82778 -34.14656 -32.65927 -31.57112 -30.93339 -29.27365 -27.50498 -27.30969 -25.36032 -24.80786 -23.25918 -22.60058 -21.51133 -19.83368 -19.38122 -18.62664 -18.21749 -17.95487 -17.19582 -17.12640 -16.94247 -16.42263 -16.06239 -15.89276 -15.25389 -15.11063 -14.68396 -14.61481 -14.37662 -14.04120 -13.90005 -13.80518 -13.50342 -13.39810 -13.18900 -13.02980 -12.93989 -12.84785 -12.72331 -12.65095 -12.43867 -12.19931 -12.10136 -12.09110 -11.65498 -11.49596 -11.16846 -10.61748 -10.59159 -10.40988 -9.65368 -9.17706 -8.72985 -8.14498 -6.31169 -0.23747 0.45312 0.82811 1.39148 1.41046 1.52205 2.21514 2.34113 2.53731 2.60174 2.75700 3.13455 3.25016 3.70298 3.87125 3.95190 4.05903 4.13434 4.22007 4.33975 4.39355 4.45912 4.54594 4.60697 4.75056 4.78647 4.86733 4.88919 4.90356 4.94294 4.97408 5.06092 5.09454 5.20946 5.22506 5.31118 5.37157 5.48753 5.58520 5.69511 5.72661 5.74991 6.07820 6.17746 6.35350 6.78259 6.89502 6.93630 7.35136 7.58536 8.89769 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.003386 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.870125 B = 8266.896562 C = 8988.036641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.326 6.326 4 C 0.084 3.916 5 C -0.177 4.177 6 C -0.035 4.035 7 C -0.028 4.028 8 C -0.199 4.199 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.599 5.599 12 C 0.079 3.921 13 C 0.265 3.735 14 H 0.006 0.994 15 C -0.132 4.132 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.287 1.287 24 C -0.078 4.078 25 C -0.130 4.130 26 C 0.060 3.940 27 O -0.500 6.500 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.158 0.842 34 H 0.188 0.812 35 H 0.173 0.827 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.065 0.935 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 -12.437 16.430 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.241 6.241 4 C 0.039 3.961 5 C -0.196 4.196 6 C -0.035 4.035 7 C -0.048 4.048 8 C -0.219 4.219 9 C 0.300 3.700 10 O -0.467 6.467 11 N -0.329 5.329 12 C -0.063 4.063 13 C 0.162 3.838 14 H 0.024 0.976 15 C -0.190 4.190 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.789 3.211 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.213 1.213 24 C -0.097 4.097 25 C -0.149 4.149 26 C 0.015 3.985 27 O -0.312 6.312 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.176 0.824 34 H 0.204 0.796 35 H 0.191 0.809 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.035 -11.853 15.521 21.957 hybrid contribution 0.834 1.136 -0.231 1.428 sum -9.200 -10.718 15.290 20.816 Atomic orbital electron populations 1.21790 0.91276 1.04244 1.03038 1.23108 0.97085 0.80954 1.02200 1.86104 1.17856 1.31171 1.89000 1.19233 0.83357 0.93519 1.00021 1.21358 0.92434 0.98569 1.07205 1.19002 0.93100 0.93589 0.97795 1.22730 0.90469 0.95010 0.96551 1.23372 1.01334 1.01575 0.95622 1.19317 0.82076 0.84433 0.84188 1.90852 1.39082 1.43803 1.73002 1.48201 1.17553 1.35831 1.31315 1.21868 0.89692 0.92304 1.02456 1.18434 0.95812 0.86354 0.83177 0.97629 1.21865 0.97859 0.98868 1.00428 1.21614 1.11678 1.15721 1.08225 0.92014 1.25754 0.99514 0.98627 0.94751 1.70046 1.39663 1.33385 1.12754 0.85419 0.79056 0.78103 0.78521 1.18657 1.20012 1.21322 1.20874 0.98706 0.92020 0.98077 1.21149 0.91929 1.00011 1.01789 1.17952 0.88601 0.84581 1.07354 1.84806 1.66205 1.45394 1.34773 0.92650 0.87827 0.91383 0.90112 0.92234 0.82412 0.79550 0.80933 0.91841 0.91645 0.88720 0.93472 0.96502 0.91652 0.92773 0.87660 0.85261 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.04 0.77 5.46 71.98 0.39 1.17 16 3 O -0.33 -9.24 9.91 -79.54 -0.79 -10.02 16 4 C 0.08 2.65 6.69 22.53 0.15 2.80 16 5 C -0.18 -4.95 8.78 22.65 0.20 -4.76 16 6 C -0.03 -1.05 4.34 -20.15 -0.09 -1.14 16 7 C -0.03 -0.65 9.77 23.82 0.23 -0.42 16 8 C -0.20 -5.30 9.05 23.60 0.21 -5.08 16 9 C 0.51 20.72 6.81 86.32 0.59 21.30 16 10 O -0.58 -29.13 11.80 -4.43 -0.05 -29.19 16 11 N -0.60 -25.38 2.75 -831.99 -2.29 -27.67 16 12 C 0.08 2.43 9.10 127.77 1.16 3.59 16 13 C 0.26 14.07 2.64 44.25 0.12 14.18 16 14 H 0.01 0.37 6.90 -2.39 -0.02 0.35 16 15 C -0.13 -6.56 8.97 71.98 0.65 -5.91 16 16 C -0.53 -29.42 7.99 25.60 0.20 -29.21 16 17 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 18 C 0.01 0.71 5.30 84.66 0.45 1.16 16 19 N -0.92 -54.43 11.32 21.45 0.24 -54.19 16 20 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C -0.08 -2.80 6.77 22.57 0.15 -2.65 16 25 C -0.13 -4.67 9.96 22.30 0.22 -4.45 16 26 C 0.06 2.07 6.72 22.71 0.15 2.22 16 27 O -0.50 -15.74 13.27 -77.52 -1.03 -16.76 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 32 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 33 H 0.16 3.26 6.28 -2.91 -0.02 3.25 16 34 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.17 3.08 6.33 -2.91 -0.02 3.06 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.21 7.02 -2.39 -0.02 2.19 16 38 H 0.09 2.12 6.19 -2.38 -0.01 2.11 16 39 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 42 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 43 H 0.11 3.99 7.45 -2.91 -0.02 3.97 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 45 H 0.40 8.01 9.06 -74.06 -0.67 7.34 16 Total: -1.00 -79.74 369.29 3.98 -75.75 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.34 Total: 24.79 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.54 Total: -8.52 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.05 Total: -81.86 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.87 Total: -55.97 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.74 3.98 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255123826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.645 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds