Wall clock time and date at job start Tue Mar 31 2020 12:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47466 * 2 1 4 4 C 1.42889 * 114.00158 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47562 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47044 * 64.99790 * 5 4 3 7 7 C 1.46501 * 120.00136 * 270.00541 * 6 5 4 8 8 C 1.34776 * 120.00140 * 90.00553 * 6 5 4 9 9 O 1.21727 * 119.99965 * 359.97438 * 8 6 5 10 10 C 1.46252 * 120.00525 * 180.02562 * 8 6 5 11 11 C 1.35016 * 120.00311 * 173.17435 * 10 8 6 12 12 C 1.46956 * 120.00166 * 348.51493 * 11 10 8 13 13 C 1.40025 * 120.09741 * 316.61019 * 12 11 10 14 14 C 1.37606 * 119.89738 * 179.79026 * 13 12 11 15 15 C 1.39178 * 120.09874 * 0.48570 * 14 13 12 16 16 O 1.35572 * 119.89634 * 179.76708 * 15 14 13 17 17 C 1.34789 * 116.99715 * 174.34320 * 16 15 14 18 18 H 1.07998 * 120.00152 * 5.06028 * 17 16 15 19 19 C 1.38715 * 119.99665 * 185.05865 * 17 16 15 20 20 N 1.31506 * 119.99848 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00056 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47455 * 90.00282 * 21 19 17 23 23 H 1.48507 * 109.47143 * 209.99907 * 21 19 17 24 24 H 1.48500 * 109.47317 * 329.99862 * 21 19 17 25 25 C 1.39174 * 120.20452 * 359.74124 * 15 14 13 26 26 C 1.37603 * 120.10270 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47162 * 300.00078 * 1 2 3 29 29 H 1.09004 * 109.46798 * 59.99240 * 1 2 3 30 30 H 1.09002 * 109.46476 * 240.00217 * 2 1 3 31 31 H 1.08997 * 109.47199 * 120.00686 * 2 1 3 32 32 H 1.08996 * 109.47452 * 60.00574 * 4 3 2 33 33 H 1.09005 * 109.47426 * 300.00485 * 4 3 2 34 34 H 1.09001 * 109.46942 * 305.00417 * 5 4 3 35 35 H 1.08998 * 109.47827 * 185.00128 * 5 4 3 36 36 H 1.08999 * 109.47057 * 269.99637 * 7 6 5 37 37 H 1.08995 * 109.47501 * 29.99702 * 7 6 5 38 38 H 1.09005 * 109.47211 * 150.00018 * 7 6 5 39 39 H 1.08004 * 119.99527 * 352.89813 * 10 8 6 40 40 H 1.07998 * 120.00201 * 168.50803 * 11 10 8 41 41 H 1.07994 * 120.05374 * 359.97438 * 13 12 11 42 42 H 1.07997 * 119.94939 * 180.23385 * 14 13 12 43 43 H 0.97007 * 120.00221 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.95033 * 180.02562 * 25 15 14 45 45 H 1.07995 * 120.05421 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 7 3.3870 3.5602 1.2530 7 6 2.0570 4.1679 1.3424 8 6 4.2071 3.5735 2.3224 9 8 5.3121 3.0681 2.2483 10 6 3.7692 4.1939 3.5723 11 6 4.5309 4.0875 4.6820 12 6 5.6612 3.1487 4.7101 13 6 5.5157 1.8585 4.1859 14 6 6.5781 0.9843 4.2105 15 6 7.7928 1.3775 4.7645 16 8 8.8354 0.5112 4.7908 17 6 10.0162 0.9882 5.2324 18 1 10.0810 1.9936 5.6214 19 6 11.1481 0.1877 5.1870 20 7 12.3003 0.6533 5.6173 21 14 11.0358 -1.5515 4.5148 22 1 11.2927 -1.5345 3.0523 23 1 12.0475 -2.4075 5.1850 24 1 9.6782 -2.0952 4.7727 25 6 7.9406 2.6572 5.2910 26 6 6.8852 3.5398 5.2665 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9765 0.8908 34 1 3.3500 3.4416 -0.8406 35 1 4.9084 3.0254 -0.0880 36 1 2.1170 5.2175 1.0545 37 1 1.3733 3.6461 0.6728 38 1 1.6910 4.0924 2.3664 39 1 2.8386 4.7410 3.6064 40 1 4.3096 4.6923 5.5489 41 1 4.5720 1.5510 3.7602 42 1 6.4679 -0.0097 3.8029 43 1 13.0919 0.0934 5.5860 44 1 8.8852 2.9581 5.7196 45 1 7.0007 4.5325 5.6757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255169864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:54 Heat of formation + Delta-G solvation = -48.041102 kcal Electronic energy + Delta-G solvation = -26591.265177 eV Core-core repulsion = 22769.117666 eV Total energy + Delta-G solvation = -3822.147512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01934 -38.96229 -38.13331 -36.73342 -35.29010 -33.18595 -32.32662 -31.88975 -30.20763 -29.75668 -28.11787 -26.45993 -25.39071 -23.96348 -23.02338 -22.07115 -21.83633 -20.42063 -18.45998 -17.78072 -17.48080 -17.08062 -16.62826 -16.53522 -15.66843 -15.50792 -14.79710 -14.64030 -14.23480 -13.98261 -13.85263 -13.69298 -13.48068 -13.23759 -12.98663 -12.91203 -12.73646 -12.55123 -12.42296 -12.23450 -12.11975 -11.98604 -11.95541 -11.57973 -11.39429 -11.20078 -10.93286 -10.73465 -10.63596 -10.14112 -9.82810 -9.48875 -9.40600 -9.19996 -8.74966 -8.61695 -7.98725 -6.96470 -6.41294 -4.05178 1.19576 2.33695 2.63061 3.10364 3.23233 3.27274 3.41617 3.44838 3.62774 4.24851 4.62926 4.75381 4.78065 4.84705 4.90588 5.01642 5.07377 5.08776 5.12662 5.15252 5.21513 5.24859 5.34080 5.42731 5.54111 5.59660 5.63063 5.68003 5.71227 5.74700 5.78224 5.81628 6.18616 6.25222 6.37548 6.50629 6.57986 6.69433 6.93333 6.98127 7.19152 7.32582 7.39551 7.53727 7.68299 7.85646 8.07384 8.47948 8.94019 9.58536 10.66162 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003175 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.525344 B = 8816.479771 C =10117.870194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.046 3.954 5 C 0.123 3.877 6 N -0.616 5.616 7 C 0.085 3.915 8 C 0.540 3.460 9 O -0.515 6.515 10 C -0.263 4.263 11 C 0.023 3.977 12 C -0.179 4.179 13 C 0.011 3.989 14 C -0.203 4.203 15 C 0.177 3.823 16 O -0.214 6.214 17 C -0.387 4.387 18 H 0.108 0.892 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.237 4.237 26 C -0.044 4.044 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.280 0.720 44 H 0.132 0.868 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.476 4.414 -9.489 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.032 4.032 5 C -0.001 4.001 6 N -0.350 5.350 7 C -0.058 4.058 8 C 0.332 3.668 9 O -0.391 6.391 10 C -0.284 4.284 11 C 0.004 3.996 12 C -0.180 4.180 13 C -0.008 4.008 14 C -0.222 4.222 15 C 0.124 3.876 16 O -0.118 6.118 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.257 4.257 26 C -0.062 4.062 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.150 0.850 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.724 4.010 -9.562 24.978 hybrid contribution 0.210 -0.758 -0.340 0.856 sum -22.515 3.252 -9.902 24.810 Atomic orbital electron populations 1.21727 0.93855 1.02150 1.02915 1.22432 0.95402 0.84091 1.00084 1.87833 1.21246 1.26191 1.95482 1.22996 0.81200 0.98037 1.00957 1.21409 1.01404 0.90887 0.86376 1.47723 1.16396 1.58715 1.12196 1.21752 0.83878 0.97217 1.02975 1.18552 0.84686 0.79386 0.84212 1.90977 1.20226 1.44828 1.83097 1.22720 1.02879 1.09508 0.93246 1.22365 0.90749 0.90975 0.95559 1.18361 0.94555 0.94868 1.10185 1.20427 0.96575 0.91869 0.91916 1.19985 0.92156 1.00989 1.09092 1.19258 0.87807 0.88677 0.91870 1.83505 1.17458 1.36557 1.74261 1.20831 0.82262 1.02150 1.41037 0.87464 1.24485 0.93515 0.99801 0.96205 1.69626 0.99328 1.37793 1.44776 0.86184 0.78825 0.82629 0.79301 1.19842 1.20756 1.18336 1.21069 1.00601 0.94718 1.09267 1.20801 0.91978 0.97712 0.95711 0.91260 0.91898 0.92023 0.93612 0.93451 0.92615 0.92531 0.90207 0.88251 0.93398 0.90552 0.91193 0.85837 0.85923 0.88064 0.86956 0.91016 0.85035 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.09 9.17 -35.23 -0.32 -4.41 16 4 C 0.05 0.50 6.28 37.16 0.23 0.73 16 5 C 0.12 1.34 5.81 -4.04 -0.02 1.31 16 6 N -0.62 -7.27 2.84 -183.29 -0.52 -7.79 16 7 C 0.09 0.72 9.92 59.85 0.59 1.31 16 8 C 0.54 8.02 6.63 -13.04 -0.09 7.93 16 9 O -0.51 -9.75 11.76 5.16 0.06 -9.69 16 10 C -0.26 -3.35 9.02 -37.51 -0.34 -3.69 16 11 C 0.02 0.32 9.80 -37.20 -0.36 -0.04 16 12 C -0.18 -3.24 4.54 -105.03 -0.48 -3.72 16 13 C 0.01 0.21 6.60 -39.14 -0.26 -0.05 16 14 C -0.20 -4.41 9.97 -39.46 -0.39 -4.81 16 15 C 0.18 4.33 6.66 -38.89 -0.26 4.07 16 16 O -0.21 -5.85 8.57 0.71 0.01 -5.85 16 17 C -0.39 -11.19 9.94 30.91 0.31 -10.89 16 18 H 0.11 3.16 5.41 -52.49 -0.28 2.88 16 19 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 22.09 28.62 -169.99 -4.86 17.23 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.24 -5.41 9.14 -39.47 -0.36 -5.77 16 26 C -0.04 -0.84 9.79 -39.14 -0.38 -1.23 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 35 H 0.10 1.22 7.42 -51.93 -0.39 0.84 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.62 7.11 -51.93 -0.37 0.25 16 38 H 0.07 0.54 6.19 -51.93 -0.32 0.21 16 39 H 0.12 1.16 6.34 -52.48 -0.33 0.83 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.10 1.80 7.01 -52.49 -0.37 1.43 16 42 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 3.11 5.62 -52.49 -0.29 2.81 16 45 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -32.91 373.58 -7.07 -39.98 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.56 Total: 2.85 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.28 Total: -13.03 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.25 Total: -32.71 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.26 Total: -19.95 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.91 -7.07 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255169864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.057 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds