Wall clock time and date at job start Tue Mar 31 2020 12:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47466 * 2 1 4 4 C 1.42889 * 114.00158 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47562 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47044 * 64.99790 * 5 4 3 7 7 C 1.46501 * 120.00136 * 270.00541 * 6 5 4 8 8 C 1.34776 * 120.00140 * 90.00553 * 6 5 4 9 9 O 1.21727 * 119.99965 * 359.97438 * 8 6 5 10 10 C 1.46252 * 120.00525 * 180.02562 * 8 6 5 11 11 C 1.35016 * 120.00311 * 173.17435 * 10 8 6 12 12 C 1.46956 * 120.00166 * 348.51493 * 11 10 8 13 13 C 1.40025 * 120.09741 * 316.61019 * 12 11 10 14 14 C 1.37606 * 119.89738 * 179.79026 * 13 12 11 15 15 C 1.39178 * 120.09874 * 0.48570 * 14 13 12 16 16 O 1.35572 * 119.89634 * 179.76708 * 15 14 13 17 17 C 1.34789 * 116.99715 * 174.34320 * 16 15 14 18 18 H 1.07998 * 120.00152 * 5.06028 * 17 16 15 19 19 C 1.38715 * 119.99665 * 185.05865 * 17 16 15 20 20 N 1.31506 * 119.99848 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00056 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47455 * 90.00282 * 21 19 17 23 23 H 1.48507 * 109.47143 * 209.99907 * 21 19 17 24 24 H 1.48500 * 109.47317 * 329.99862 * 21 19 17 25 25 C 1.39174 * 120.20452 * 359.74124 * 15 14 13 26 26 C 1.37603 * 120.10270 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47162 * 300.00078 * 1 2 3 29 29 H 1.09004 * 109.46798 * 59.99240 * 1 2 3 30 30 H 1.09002 * 109.46476 * 240.00217 * 2 1 3 31 31 H 1.08997 * 109.47199 * 120.00686 * 2 1 3 32 32 H 1.08996 * 109.47452 * 60.00574 * 4 3 2 33 33 H 1.09005 * 109.47426 * 300.00485 * 4 3 2 34 34 H 1.09001 * 109.46942 * 305.00417 * 5 4 3 35 35 H 1.08998 * 109.47827 * 185.00128 * 5 4 3 36 36 H 1.08999 * 109.47057 * 269.99637 * 7 6 5 37 37 H 1.08995 * 109.47501 * 29.99702 * 7 6 5 38 38 H 1.09005 * 109.47211 * 150.00018 * 7 6 5 39 39 H 1.08004 * 119.99527 * 352.89813 * 10 8 6 40 40 H 1.07998 * 120.00201 * 168.50803 * 11 10 8 41 41 H 1.07994 * 120.05374 * 359.97438 * 13 12 11 42 42 H 1.07997 * 119.94939 * 180.23385 * 14 13 12 43 43 H 0.97007 * 120.00221 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.95033 * 180.02562 * 25 15 14 45 45 H 1.07995 * 120.05421 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 7 3.3870 3.5602 1.2530 7 6 2.0570 4.1679 1.3424 8 6 4.2071 3.5735 2.3224 9 8 5.3121 3.0681 2.2483 10 6 3.7692 4.1939 3.5723 11 6 4.5309 4.0875 4.6820 12 6 5.6612 3.1487 4.7101 13 6 5.5157 1.8585 4.1859 14 6 6.5781 0.9843 4.2105 15 6 7.7928 1.3775 4.7645 16 8 8.8354 0.5112 4.7908 17 6 10.0162 0.9882 5.2324 18 1 10.0810 1.9936 5.6214 19 6 11.1481 0.1877 5.1870 20 7 12.3003 0.6533 5.6173 21 14 11.0358 -1.5515 4.5148 22 1 11.2927 -1.5345 3.0523 23 1 12.0475 -2.4075 5.1850 24 1 9.6782 -2.0952 4.7727 25 6 7.9406 2.6572 5.2910 26 6 6.8852 3.5398 5.2665 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9765 0.8908 34 1 3.3500 3.4416 -0.8406 35 1 4.9084 3.0254 -0.0880 36 1 2.1170 5.2175 1.0545 37 1 1.3733 3.6461 0.6728 38 1 1.6910 4.0924 2.3664 39 1 2.8386 4.7410 3.6064 40 1 4.3096 4.6923 5.5489 41 1 4.5720 1.5510 3.7602 42 1 6.4679 -0.0097 3.8029 43 1 13.0919 0.0934 5.5860 44 1 8.8852 2.9581 5.7196 45 1 7.0007 4.5325 5.6757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255169864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:53 Heat of formation + Delta-G solvation = -68.538567 kcal Electronic energy + Delta-G solvation = -26592.154014 eV Core-core repulsion = 22769.117666 eV Total energy + Delta-G solvation = -3823.036348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26244 -40.60355 -39.06649 -38.28737 -36.39401 -34.68981 -34.16491 -32.67034 -31.87297 -30.68401 -29.53708 -27.46816 -27.17397 -25.11913 -23.67707 -23.66375 -23.23115 -21.76166 -19.96536 -19.43277 -18.99691 -18.41300 -17.52543 -17.42794 -16.77582 -16.56591 -16.43374 -16.03871 -15.73207 -15.59108 -15.35700 -14.94490 -14.68375 -14.46894 -14.28956 -14.14156 -14.02073 -13.74341 -13.65195 -13.54696 -13.27112 -13.05434 -12.79881 -12.71701 -12.65090 -12.50542 -12.24812 -12.21450 -11.97343 -11.94950 -11.34517 -11.02593 -10.71686 -10.53063 -10.43877 -9.78622 -9.42366 -8.61843 -8.52820 -6.23783 -0.05442 0.66754 1.07666 1.27526 1.33808 1.48878 2.18436 2.25765 2.43952 2.72525 2.79031 3.03253 3.21747 3.81605 3.97973 4.06063 4.08075 4.12185 4.12990 4.20129 4.29853 4.40595 4.45462 4.48485 4.52229 4.58205 4.59463 4.75068 4.76627 4.88378 4.90694 4.92411 5.03790 5.06727 5.19236 5.19651 5.27109 5.36426 5.44103 5.61770 5.69272 5.76907 5.82288 5.89226 6.18426 6.24946 6.54659 6.81348 7.36915 7.56962 8.58862 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003175 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.525344 B = 8816.479771 C =10117.870194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.392 6.392 4 C 0.052 3.948 5 C 0.120 3.880 6 N -0.609 5.609 7 C 0.079 3.921 8 C 0.525 3.475 9 O -0.567 6.567 10 C -0.231 4.231 11 C 0.002 3.998 12 C -0.150 4.150 13 C 0.013 3.987 14 C -0.209 4.209 15 C 0.134 3.866 16 O -0.244 6.244 17 C -0.401 4.401 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.921 5.921 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.262 1.262 24 H -0.265 1.265 25 C -0.252 4.252 26 C -0.052 4.052 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.286 0.714 44 H 0.110 0.890 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.999 5.712 -10.634 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 O -0.312 6.312 4 C -0.026 4.026 5 C -0.003 4.003 6 N -0.342 5.342 7 C -0.063 4.063 8 C 0.317 3.683 9 O -0.448 6.448 10 C -0.251 4.251 11 C -0.017 4.017 12 C -0.150 4.150 13 C -0.006 4.006 14 C -0.228 4.228 15 C 0.085 3.915 16 O -0.151 6.151 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.561 5.561 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.186 1.186 24 H -0.190 1.190 25 C -0.271 4.271 26 C -0.070 4.070 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.338 5.345 -10.731 29.851 hybrid contribution 1.125 -0.885 -0.162 1.441 sum -26.213 4.460 -10.893 28.734 Atomic orbital electron populations 1.21717 0.92230 1.03204 1.02973 1.22613 0.96711 0.83303 1.00101 1.87811 1.20607 1.27302 1.95476 1.22855 0.81662 0.97826 1.00247 1.21465 1.00610 0.91268 0.86999 1.47848 1.17210 1.57529 1.11577 1.22007 0.81874 0.98143 1.04233 1.19116 0.84394 0.79167 0.85633 1.90973 1.22554 1.47258 1.84034 1.23150 1.03277 1.07194 0.91482 1.22599 0.89400 0.91550 0.98175 1.18906 0.95337 0.95035 1.05768 1.20668 0.96419 0.92088 0.91385 1.20206 0.91976 1.01817 1.08804 1.19714 0.88140 0.89578 0.94069 1.83451 1.17444 1.37409 1.76808 1.20764 0.83680 1.01590 1.41697 0.90022 1.25276 0.93017 1.03765 0.96639 1.69703 1.00050 1.39488 1.46891 0.85244 0.78734 0.77965 0.78901 1.19236 1.18640 1.18952 1.21116 1.01066 0.95153 1.09762 1.21156 0.91367 0.98552 0.95903 0.89784 0.92120 0.91600 0.92839 0.94282 0.91414 0.95288 0.87605 0.90224 0.91373 0.89998 0.89699 0.81160 0.81457 0.86246 0.86634 0.90460 0.87220 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.39 -7.37 9.17 -148.98 -1.37 -8.73 16 4 C 0.05 1.06 6.28 71.98 0.45 1.51 16 5 C 0.12 2.39 5.81 86.38 0.50 2.89 16 6 N -0.61 -12.39 2.84 -852.00 -2.42 -14.81 16 7 C 0.08 0.95 9.92 127.77 1.27 2.22 16 8 C 0.52 13.99 6.63 86.33 0.57 14.56 16 9 O -0.57 -20.90 11.76 -4.43 -0.05 -20.95 16 10 C -0.23 -4.66 9.02 23.61 0.21 -4.45 16 11 C 0.00 0.05 9.80 23.81 0.23 0.28 16 12 C -0.15 -5.12 4.54 -20.13 -0.09 -5.21 16 13 C 0.01 0.48 6.60 22.55 0.15 0.63 16 14 C -0.21 -9.36 9.97 22.35 0.22 -9.13 16 15 C 0.13 6.96 6.66 22.72 0.15 7.11 16 16 O -0.24 -14.26 8.57 -20.37 -0.17 -14.43 16 17 C -0.40 -24.89 9.94 67.93 0.68 -24.22 16 18 H 0.08 5.29 5.41 -2.91 -0.02 5.27 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.92 -56.63 13.96 21.62 0.30 -56.33 16 21 Si 0.97 47.43 28.62 68.60 1.96 49.39 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 25 C -0.25 -12.09 9.14 22.34 0.20 -11.88 16 26 C -0.05 -1.97 9.79 22.55 0.22 -1.75 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.11 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.08 1.93 7.42 -2.39 -0.02 1.91 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.96 7.11 -2.39 -0.02 0.94 16 38 H 0.08 0.79 6.19 -2.38 -0.01 0.77 16 39 H 0.17 1.92 6.34 -2.91 -0.02 1.90 16 40 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.12 4.04 7.01 -2.91 -0.02 4.02 16 42 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.29 16.04 8.31 -92.70 -0.77 15.27 16 44 H 0.11 5.67 5.62 -2.91 -0.02 5.65 16 45 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -77.88 373.58 5.70 -72.18 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.98 Total: 19.59 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 6.46 Total: -25.92 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -2.12 Total: -71.13 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.59 Total: -44.11 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.96 Total: 49.39 kcal Total: -77.88 5.70 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255169864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.646 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds