Wall clock time and date at job start Tue Mar 31 2020 12:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46660 * 2 1 4 4 C 1.35825 * 116.99870 * 179.97438 * 3 2 1 5 5 C 1.38858 * 119.90471 * 359.97438 * 4 3 2 6 6 C 1.37748 * 120.17596 * 179.76114 * 5 4 3 7 7 C 1.39953 * 119.97153 * 0.51580 * 6 5 4 8 8 C 1.47006 * 120.09348 * 179.76534 * 7 6 5 9 9 C 1.34981 * 119.99821 * 226.08480 * 8 7 6 10 10 C 1.46253 * 120.00034 * 11.10682 * 9 8 7 11 11 O 1.21721 * 120.00145 * 6.96875 * 10 9 8 12 12 N 1.34786 * 120.00180 * 186.96660 * 10 9 8 13 13 C 1.46497 * 120.00194 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47226 * 34.99414 * 13 12 10 15 15 C 1.53000 * 109.46954 * 274.99882 * 13 12 10 16 16 C 1.50700 * 109.47208 * 154.99651 * 13 12 10 17 17 H 1.07996 * 119.99923 * 34.81683 * 16 13 12 18 18 C 1.37878 * 119.99832 * 214.81409 * 16 13 12 19 19 N 1.31512 * 119.99606 * 184.68362 * 18 16 13 20 20 Si 1.86797 * 120.00177 * 4.68728 * 18 16 13 21 21 H 1.48495 * 109.47282 * 94.62747 * 20 18 16 22 22 H 1.48505 * 109.47080 * 214.62883 * 20 18 16 23 23 H 1.48505 * 109.47069 * 334.62376 * 20 18 16 24 24 C 1.39968 * 119.81284 * 359.48657 * 7 6 5 25 25 C 1.38091 * 119.82280 * 0.25777 * 24 7 6 26 26 O 1.36000 * 119.98916 * 179.97438 * 25 24 7 27 27 C 1.42897 * 116.99588 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47331 * 299.99712 * 1 2 3 29 29 H 1.08998 * 109.47184 * 60.00273 * 1 2 3 30 30 H 1.08998 * 109.46367 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47497 * 240.00244 * 2 1 3 32 32 H 1.08998 * 109.47184 * 119.99727 * 2 1 3 33 33 H 1.08005 * 119.91098 * 0.02562 * 5 4 3 34 34 H 1.07994 * 120.01733 * 180.25472 * 6 5 4 35 35 H 1.07994 * 120.00186 * 46.36337 * 8 7 6 36 36 H 1.07999 * 120.00076 * 191.10933 * 9 8 7 37 37 H 0.97004 * 119.99346 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47370 * 55.02044 * 15 13 12 39 39 H 1.08999 * 109.47466 * 175.03024 * 15 13 12 40 40 H 1.09003 * 109.47081 * 295.02373 * 15 13 12 41 41 H 0.96999 * 120.00034 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.08563 * 180.27909 * 24 7 6 43 43 H 1.09004 * 109.47078 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.47660 * 300.00443 * 27 26 25 45 45 H 1.09002 * 109.47151 * 60.00602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5254 0.0005 5 6 4.1969 0.4228 0.0016 6 6 5.5633 0.5969 -0.0028 7 6 6.1037 1.8879 0.0025 8 6 7.5616 2.0768 0.0031 9 6 8.1268 2.9640 0.8488 10 6 7.3329 3.5569 1.9246 11 8 6.2026 3.1587 2.1373 12 7 7.8530 4.5443 2.6804 13 6 7.0580 5.1378 3.7583 14 1 6.4341 4.3695 4.2151 15 6 6.1685 6.2435 3.1865 16 6 7.9787 5.7214 4.7988 17 1 8.9135 6.1726 4.5006 18 6 7.6277 5.6794 6.1315 19 7 8.3855 6.2693 7.0300 20 14 6.0757 4.7846 6.6608 21 1 6.4175 3.3971 7.0644 22 1 5.4609 5.4971 7.8096 23 1 5.1147 4.7486 5.5292 24 6 5.2521 2.9988 0.0015 25 6 3.8835 2.8149 0.0006 26 8 3.0529 3.8918 0.0001 27 6 3.6650 5.1830 0.0011 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7809 -0.5739 0.0016 34 1 6.2174 -0.2624 -0.0061 35 1 8.1799 1.5090 -0.6763 36 1 9.1653 3.2361 0.7311 37 1 8.7540 4.8613 2.5111 38 1 5.5651 5.8404 2.3732 39 1 5.5138 6.6249 3.9702 40 1 6.7929 7.0532 2.8088 41 1 8.1384 6.2401 7.9675 42 1 5.6644 3.9970 0.0010 43 1 2.8920 5.9516 0.0010 44 1 4.2842 5.2910 0.8917 45 1 4.2858 5.2916 -0.8883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255621117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:29 Heat of formation + Delta-G solvation = -63.163522 kcal Electronic energy + Delta-G solvation = -27336.896722 eV Core-core repulsion = 23514.093453 eV Total energy + Delta-G solvation = -3822.803269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45894 -39.13509 -38.34794 -36.92213 -34.90693 -33.18057 -32.35903 -31.74730 -30.16269 -29.88170 -28.49005 -27.06302 -25.33041 -24.21298 -23.40856 -21.79103 -21.41427 -19.96873 -19.29167 -18.48444 -17.56449 -16.77969 -16.33763 -16.22410 -15.93623 -15.44584 -15.31748 -14.79882 -14.33607 -14.30871 -13.83641 -13.75179 -13.50624 -13.25000 -13.04496 -12.77828 -12.64930 -12.55254 -12.33769 -12.10906 -11.86023 -11.82735 -11.45259 -11.12545 -11.07791 -11.00939 -10.88970 -10.79133 -10.77124 -10.57618 -9.84373 -9.45694 -9.21168 -9.17729 -8.70373 -8.16806 -7.92650 -7.43819 -6.24394 -4.28006 0.96842 1.62093 2.05633 3.22340 3.25153 3.34322 3.42937 3.48507 3.88127 3.96990 4.13368 4.32207 4.76769 4.78881 4.84201 4.98546 5.07968 5.10999 5.12741 5.24616 5.29325 5.37185 5.40450 5.54302 5.55994 5.60140 5.63517 5.71319 5.82966 5.90131 6.08363 6.25869 6.33027 6.35158 6.50111 6.53699 6.65567 6.74305 6.83791 6.95495 7.18677 7.21062 7.40017 7.56705 7.75859 8.15436 8.59607 8.76786 9.03656 9.38274 10.87368 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.003875 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.517578 B = 7224.343867 C = 7909.966181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.107 3.893 5 C -0.187 4.187 6 C -0.100 4.100 7 C -0.055 4.055 8 C -0.043 4.043 9 C -0.197 4.197 10 C 0.519 3.481 11 O -0.544 6.544 12 N -0.698 5.698 13 C 0.228 3.772 14 H 0.054 0.946 15 C -0.145 4.145 16 C -0.530 4.530 17 H 0.078 0.922 18 C 0.081 3.919 19 N -0.889 5.889 20 Si 0.871 3.129 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.256 1.256 24 C -0.090 4.090 25 C 0.091 3.909 26 O -0.310 6.310 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.392 0.608 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.267 0.733 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -10.527 -17.931 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.061 3.939 5 C -0.206 4.206 6 C -0.118 4.118 7 C -0.056 4.056 8 C -0.063 4.063 9 C -0.218 4.218 10 C 0.306 3.694 11 O -0.425 6.425 12 N -0.345 5.345 13 C 0.126 3.874 14 H 0.071 0.929 15 C -0.204 4.204 16 C -0.568 4.568 17 H 0.096 0.904 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.698 3.302 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.181 1.181 24 C -0.109 4.109 25 C 0.045 3.955 26 O -0.224 6.224 27 C -0.070 4.070 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.225 0.775 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.745 -10.565 -17.520 22.250 hybrid contribution 0.274 -0.309 0.594 0.723 sum -8.471 -10.875 -16.926 21.829 Atomic orbital electron populations 1.21752 0.92983 1.02496 1.03558 1.22740 0.95744 0.82573 1.01104 1.86113 1.18631 1.28379 1.88965 1.18282 0.82634 0.91198 1.01761 1.20765 0.93906 0.96892 1.09051 1.20791 0.94063 0.95974 1.00994 1.18498 0.92532 0.92605 1.01946 1.22200 0.92922 0.94744 0.96409 1.23285 1.00844 1.00441 0.97221 1.18485 0.86985 0.80694 0.83255 1.90864 1.18811 1.62228 1.70582 1.46636 1.18403 1.35760 1.33750 1.19181 0.91132 0.91925 0.85176 0.92865 1.22231 0.99119 0.99720 0.99345 1.21021 1.06566 1.39008 0.90238 0.90394 1.24937 0.96614 0.94412 0.96346 1.69886 1.38335 1.42423 1.01937 0.86914 0.84205 0.80272 0.78825 1.20065 1.21037 1.18060 1.20957 0.90579 0.99149 1.00180 1.17987 0.88815 0.85252 1.03400 1.86103 1.33813 1.13043 1.89433 1.23086 0.99776 0.82537 1.01559 0.91491 0.91623 0.90625 0.92331 0.92211 0.85300 0.85907 0.85035 0.85279 0.77451 0.95475 0.93028 0.93475 0.92277 0.85435 0.88534 0.91949 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.31 -4.68 9.91 -33.87 -0.34 -5.02 16 4 C 0.11 1.72 6.71 -38.90 -0.26 1.46 16 5 C -0.19 -2.58 9.01 -39.53 -0.36 -2.94 16 6 C -0.10 -1.36 9.78 -39.12 -0.38 -1.75 16 7 C -0.06 -0.83 4.42 -105.05 -0.46 -1.30 16 8 C -0.04 -0.54 9.78 -37.19 -0.36 -0.91 16 9 C -0.20 -2.75 9.91 -37.52 -0.37 -3.12 16 10 C 0.52 9.76 6.83 -13.04 -0.09 9.67 16 11 O -0.54 -11.97 12.02 5.17 0.06 -11.90 16 12 N -0.70 -13.82 5.06 -56.38 -0.29 -14.10 16 13 C 0.23 5.39 2.19 -69.08 -0.15 5.24 16 14 H 0.05 1.40 4.52 -51.93 -0.23 1.16 16 15 C -0.15 -3.12 9.47 37.16 0.35 -2.77 16 16 C -0.53 -14.22 9.05 -34.44 -0.31 -14.53 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 18 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 19 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 20 Si 0.87 21.80 27.30 -169.99 -4.64 17.16 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.39 6.39 56.52 0.36 -6.03 16 24 C -0.09 -1.48 5.68 -38.99 -0.22 -1.70 16 25 C 0.09 1.57 6.69 -39.19 -0.26 1.31 16 26 O -0.31 -5.35 10.27 -34.41 -0.35 -5.70 16 27 C 0.03 0.35 9.81 101.05 0.99 1.34 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 33 H 0.13 1.39 6.27 -52.48 -0.33 1.06 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.39 6.83 8.57 -40.82 -0.35 6.48 16 38 H 0.03 0.54 6.76 -51.93 -0.35 0.19 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.13 2.08 5.51 -52.49 -0.29 1.79 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.97 6.28 -51.93 -0.33 0.65 16 45 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -33.87 369.94 -7.09 -40.96 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.48 Total: 6.45 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.41 Total: -7.93 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.49 Total: -39.60 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.63 Total: -22.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.64 Total: 17.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.87 -7.09 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255621117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.208 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds