Wall clock time and date at job start Tue Mar 31 2020 12:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46660 * 2 1 4 4 C 1.35825 * 116.99870 * 179.97438 * 3 2 1 5 5 C 1.38858 * 119.90471 * 359.97438 * 4 3 2 6 6 C 1.37748 * 120.17596 * 179.76114 * 5 4 3 7 7 C 1.39953 * 119.97153 * 0.51580 * 6 5 4 8 8 C 1.47006 * 120.09348 * 179.76534 * 7 6 5 9 9 C 1.34981 * 119.99821 * 226.08480 * 8 7 6 10 10 C 1.46253 * 120.00034 * 11.10682 * 9 8 7 11 11 O 1.21721 * 120.00145 * 6.96875 * 10 9 8 12 12 N 1.34786 * 120.00180 * 186.96660 * 10 9 8 13 13 C 1.46497 * 120.00194 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47226 * 34.99414 * 13 12 10 15 15 C 1.53000 * 109.46954 * 274.99882 * 13 12 10 16 16 C 1.50700 * 109.47208 * 154.99651 * 13 12 10 17 17 H 1.07996 * 119.99923 * 34.81683 * 16 13 12 18 18 C 1.37878 * 119.99832 * 214.81409 * 16 13 12 19 19 N 1.31512 * 119.99606 * 184.68362 * 18 16 13 20 20 Si 1.86797 * 120.00177 * 4.68728 * 18 16 13 21 21 H 1.48495 * 109.47282 * 94.62747 * 20 18 16 22 22 H 1.48505 * 109.47080 * 214.62883 * 20 18 16 23 23 H 1.48505 * 109.47069 * 334.62376 * 20 18 16 24 24 C 1.39968 * 119.81284 * 359.48657 * 7 6 5 25 25 C 1.38091 * 119.82280 * 0.25777 * 24 7 6 26 26 O 1.36000 * 119.98916 * 179.97438 * 25 24 7 27 27 C 1.42897 * 116.99588 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47331 * 299.99712 * 1 2 3 29 29 H 1.08998 * 109.47184 * 60.00273 * 1 2 3 30 30 H 1.08998 * 109.46367 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47497 * 240.00244 * 2 1 3 32 32 H 1.08998 * 109.47184 * 119.99727 * 2 1 3 33 33 H 1.08005 * 119.91098 * 0.02562 * 5 4 3 34 34 H 1.07994 * 120.01733 * 180.25472 * 6 5 4 35 35 H 1.07994 * 120.00186 * 46.36337 * 8 7 6 36 36 H 1.07999 * 120.00076 * 191.10933 * 9 8 7 37 37 H 0.97004 * 119.99346 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47370 * 55.02044 * 15 13 12 39 39 H 1.08999 * 109.47466 * 175.03024 * 15 13 12 40 40 H 1.09003 * 109.47081 * 295.02373 * 15 13 12 41 41 H 0.96999 * 120.00034 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.08563 * 180.27909 * 24 7 6 43 43 H 1.09004 * 109.47078 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.47660 * 300.00443 * 27 26 25 45 45 H 1.09002 * 109.47151 * 60.00602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5254 0.0005 5 6 4.1969 0.4228 0.0016 6 6 5.5633 0.5969 -0.0028 7 6 6.1037 1.8879 0.0025 8 6 7.5616 2.0768 0.0031 9 6 8.1268 2.9640 0.8488 10 6 7.3329 3.5569 1.9246 11 8 6.2026 3.1587 2.1373 12 7 7.8530 4.5443 2.6804 13 6 7.0580 5.1378 3.7583 14 1 6.4341 4.3695 4.2151 15 6 6.1685 6.2435 3.1865 16 6 7.9787 5.7214 4.7988 17 1 8.9135 6.1726 4.5006 18 6 7.6277 5.6794 6.1315 19 7 8.3855 6.2693 7.0300 20 14 6.0757 4.7846 6.6608 21 1 6.4175 3.3971 7.0644 22 1 5.4609 5.4971 7.8096 23 1 5.1147 4.7486 5.5292 24 6 5.2521 2.9988 0.0015 25 6 3.8835 2.8149 0.0006 26 8 3.0529 3.8918 0.0001 27 6 3.6650 5.1830 0.0011 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7809 -0.5739 0.0016 34 1 6.2174 -0.2624 -0.0061 35 1 8.1799 1.5090 -0.6763 36 1 9.1653 3.2361 0.7311 37 1 8.7540 4.8613 2.5111 38 1 5.5651 5.8404 2.3732 39 1 5.5138 6.6249 3.9702 40 1 6.7929 7.0532 2.8088 41 1 8.1384 6.2401 7.9675 42 1 5.6644 3.9970 0.0010 43 1 2.8920 5.9516 0.0010 44 1 4.2842 5.2910 0.8917 45 1 4.2858 5.2916 -0.8883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255621117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:29 Heat of formation + Delta-G solvation = -85.639981 kcal Electronic energy + Delta-G solvation = -27337.871375 eV Core-core repulsion = 23514.093453 eV Total energy + Delta-G solvation = -3823.777921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58892 -40.54125 -39.47308 -38.10807 -36.61850 -34.36134 -34.30568 -32.62188 -31.71190 -31.07996 -29.66595 -28.20036 -27.32908 -25.26739 -24.52592 -23.03784 -22.54663 -21.60900 -20.71925 -19.67337 -19.01313 -18.27628 -17.55693 -17.34819 -17.20535 -17.07906 -16.43338 -15.97081 -15.94204 -15.49608 -15.20320 -15.08640 -14.82811 -14.59266 -14.34198 -14.14897 -14.09309 -13.81357 -13.35931 -13.29134 -13.11028 -13.02599 -12.86886 -12.79007 -12.75274 -12.46046 -12.16233 -12.04952 -11.89533 -11.88583 -11.66333 -11.20182 -10.86444 -10.64273 -10.49844 -9.71545 -9.23605 -8.56606 -8.41674 -6.46740 -0.14269 0.50661 0.93624 1.23940 1.29790 1.41469 2.23613 2.27753 2.37567 2.50801 2.63910 2.85284 3.04844 3.79550 3.83584 4.05787 4.06391 4.10028 4.17240 4.24189 4.25333 4.34037 4.40947 4.46218 4.49024 4.56929 4.59222 4.75711 4.78245 4.83469 4.89082 4.93067 5.02211 5.10824 5.18313 5.22044 5.29624 5.36386 5.45394 5.49231 5.67227 5.79002 5.81546 6.14369 6.14968 6.58883 6.66012 7.01210 7.20057 7.58453 8.73579 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.003875 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.517578 B = 7224.343867 C = 7909.966181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.088 3.912 5 C -0.186 4.186 6 C -0.097 4.097 7 C -0.078 4.078 8 C -0.017 4.017 9 C -0.212 4.212 10 C 0.515 3.485 11 O -0.580 6.580 12 N -0.702 5.702 13 C 0.235 3.765 14 H 0.028 0.972 15 C -0.138 4.138 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.035 3.965 19 N -0.930 5.930 20 Si 0.923 3.077 21 H -0.276 1.276 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.100 4.100 25 C 0.057 3.943 26 O -0.333 6.333 27 C 0.026 3.974 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.165 0.835 37 H 0.404 0.596 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.270 0.730 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.038 0.962 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -12.823 -19.841 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.043 3.957 5 C -0.205 4.205 6 C -0.115 4.115 7 C -0.078 4.078 8 C -0.036 4.036 9 C -0.233 4.233 10 C 0.305 3.695 11 O -0.463 6.463 12 N -0.350 5.350 13 C 0.130 3.870 14 H 0.046 0.954 15 C -0.197 4.197 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.569 5.569 20 Si 0.749 3.251 21 H -0.202 1.202 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.119 4.119 25 C 0.012 3.988 26 O -0.248 6.248 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.239 0.761 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.057 0.943 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.541 -12.867 -19.454 24.839 hybrid contribution 0.171 0.336 1.080 1.144 sum -8.370 -12.531 -18.374 23.763 Atomic orbital electron populations 1.21794 0.91633 1.04187 1.02861 1.23090 0.96894 0.80882 1.02260 1.86087 1.18409 1.31212 1.88985 1.18618 0.83473 0.91544 1.02104 1.21162 0.94003 0.97570 1.07742 1.21240 0.94525 0.96519 0.99262 1.18923 0.93930 0.92833 1.02115 1.22667 0.91957 0.93291 0.95673 1.23241 1.02006 1.01408 0.96624 1.19249 0.86863 0.79674 0.83719 1.90858 1.20594 1.63106 1.71699 1.46372 1.18771 1.36554 1.33309 1.18858 0.90686 0.91652 0.85767 0.95395 1.22108 0.98918 0.99357 0.99315 1.21231 1.06058 1.37956 0.90987 0.92423 1.25558 0.99009 0.95292 0.96725 1.69974 1.40160 1.44340 1.02395 0.86092 0.81396 0.79173 0.78465 1.20175 1.20057 1.18409 1.21002 0.90660 0.99478 1.00801 1.18406 0.89452 0.85900 1.05047 1.86053 1.34892 1.14016 1.89792 1.23191 1.00469 0.82068 1.01128 0.92687 0.91825 0.87682 0.90336 0.91675 0.82342 0.82470 0.80147 0.81720 0.76103 0.94425 0.93903 0.92355 0.92049 0.86288 0.86284 0.94317 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.04 0.84 5.46 71.98 0.39 1.24 16 3 O -0.33 -10.09 9.91 -77.56 -0.77 -10.86 16 4 C 0.09 2.81 6.71 22.71 0.15 2.97 16 5 C -0.19 -4.73 9.01 22.30 0.20 -4.53 16 6 C -0.10 -2.36 9.78 22.57 0.22 -2.14 16 7 C -0.08 -2.16 4.42 -20.14 -0.09 -2.25 16 8 C -0.02 -0.36 9.78 23.82 0.23 -0.12 16 9 C -0.21 -5.30 9.91 23.60 0.23 -5.06 16 10 C 0.51 18.84 6.83 86.32 0.59 19.43 16 11 O -0.58 -25.43 12.02 -4.41 -0.05 -25.49 16 12 N -0.70 -27.42 5.06 -450.48 -2.28 -29.70 16 13 C 0.23 11.13 2.19 44.25 0.10 11.23 16 14 H 0.03 1.48 4.52 -2.39 -0.01 1.47 16 15 C -0.14 -5.96 9.47 71.98 0.68 -5.28 16 16 C -0.52 -28.47 9.05 25.60 0.23 -28.23 16 17 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 18 C 0.03 1.96 5.47 84.66 0.46 2.43 16 19 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 20 Si 0.92 45.72 27.30 68.60 1.87 47.59 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.26 -12.88 6.39 99.48 0.64 -12.25 16 24 C -0.10 -3.29 5.68 22.65 0.13 -3.16 16 25 C 0.06 2.00 6.69 22.52 0.15 2.15 16 26 O -0.33 -11.86 10.27 -79.51 -0.82 -12.67 16 27 C 0.03 0.74 9.81 113.37 1.11 1.85 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.20 7.65 -2.39 -0.02 1.18 16 32 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 33 H 0.16 2.90 6.27 -2.91 -0.02 2.88 16 34 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.40 13.75 8.57 -92.71 -0.79 12.95 16 38 H 0.04 1.52 6.76 -2.39 -0.02 1.51 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.12 3.94 5.51 -2.91 -0.02 3.92 16 43 H 0.12 2.68 8.14 -2.38 -0.02 2.67 16 44 H 0.04 1.26 6.28 -2.39 -0.01 1.24 16 45 H 0.07 1.58 7.66 -2.39 -0.02 1.56 16 Total: -1.00 -76.19 369.94 3.93 -72.25 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.14 Total: 25.43 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.54 Total: -11.03 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.98 Total: -85.22 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.64 Total: -49.02 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.87 Total: 47.59 kcal Total: -76.19 3.93 -72.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255621117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.388 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds