Wall clock time and date at job start Tue Mar 31 2020 12:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46504 * 120.00271 * 269.99859 * 3 2 1 5 5 C 1.50697 * 109.47338 * 270.00352 * 4 3 2 6 6 H 1.08004 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00151 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46996 * 89.99869 * 9 7 5 11 11 H 1.48502 * 109.46887 * 209.99546 * 9 7 5 12 12 H 1.48500 * 109.46974 * 330.00004 * 9 7 5 13 13 C 1.34777 * 119.99875 * 90.00602 * 3 2 1 14 14 O 1.21703 * 120.00024 * 179.97438 * 13 3 2 15 15 C 1.46435 * 120.00238 * 0.26784 * 13 3 2 16 16 C 1.34797 * 120.00166 * 179.72509 * 15 13 3 17 17 C 1.47228 * 120.00028 * 180.02562 * 16 15 13 18 18 C 1.39783 * 120.11583 * 359.72727 * 17 16 15 19 19 C 1.38438 * 119.87666 * 179.72023 * 18 17 16 20 20 O 1.35911 * 119.94038 * 180.25406 * 19 18 17 21 21 C 1.42899 * 116.99806 * 180.30048 * 20 19 18 22 22 C 1.38782 * 120.12195 * 0.55683 * 19 18 17 23 23 C 1.38781 * 120.23349 * 359.71788 * 22 19 18 24 24 O 1.35905 * 119.93765 * 179.97438 * 23 22 19 25 25 C 1.42908 * 117.00171 * 0.02562 * 24 23 22 26 26 C 1.38431 * 120.12122 * 0.02562 * 23 22 19 27 27 H 1.09010 * 109.47071 * 299.99814 * 1 2 3 28 28 H 1.09001 * 109.47466 * 59.99921 * 1 2 3 29 29 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46785 * 240.00055 * 2 1 3 31 31 H 1.09001 * 109.47466 * 120.00078 * 2 1 3 32 32 H 1.08999 * 109.46626 * 30.00758 * 4 3 2 33 33 H 1.08996 * 109.47068 * 150.00171 * 4 3 2 34 34 H 0.97004 * 119.99953 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.99457 * 359.73201 * 15 13 3 36 36 H 1.08001 * 120.00377 * 0.02562 * 16 15 13 37 37 H 1.08002 * 120.06046 * 359.97438 * 18 17 16 38 38 H 1.08993 * 109.47174 * 60.00309 * 21 20 19 39 39 H 1.09008 * 109.46694 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47325 * 299.99661 * 21 20 19 41 41 H 1.07995 * 119.88372 * 179.74484 * 22 19 18 42 42 H 1.09000 * 109.46725 * 300.00337 * 25 24 23 43 43 H 1.08997 * 109.47035 * 60.00174 * 25 24 23 44 44 H 1.08998 * 109.47142 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.06000 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0965 -3.4171 10 1 5.9759 0.8760 -4.2608 11 1 6.3928 3.2642 -4.1994 12 1 6.7735 1.9155 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6490 3.1638 1.1672 15 6 2.0047 1.3242 2.4354 16 6 2.2347 1.9577 3.6027 17 6 1.9956 1.2615 4.8778 18 6 1.5247 -0.0547 4.8806 19 6 1.3071 -0.7066 6.0823 20 8 0.8542 -1.9880 6.0866 21 6 0.6452 -2.5980 7.3618 22 6 1.5447 -0.0520 7.2828 23 6 2.0068 1.2566 7.2857 24 8 2.2370 1.8920 8.4648 25 6 1.9823 1.1526 9.6608 26 6 2.2328 1.9161 6.0897 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 3.6753 3.5173 -4.4434 35 1 1.6447 0.3059 2.4353 36 1 2.5944 2.9761 3.6028 37 1 1.3348 -0.5633 3.9470 38 1 -0.0932 -2.0245 7.9222 39 1 0.2838 -3.6169 7.2224 40 1 1.5850 -2.6178 7.9136 41 1 1.3697 -0.5629 8.2181 42 1 0.9339 0.8555 9.6879 43 1 2.6125 0.2635 9.6795 44 1 2.2057 1.7750 10.5273 45 1 2.5921 2.9347 6.0931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264020349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:17 Heat of formation + Delta-G solvation = -64.557778 kcal Electronic energy + Delta-G solvation = -26003.670544 eV Core-core repulsion = 22180.806816 eV Total energy + Delta-G solvation = -3822.863728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77747 -39.11632 -39.05766 -37.23805 -35.27777 -33.40085 -32.66034 -30.64626 -30.07138 -29.56802 -28.32198 -27.08797 -26.91049 -24.24132 -22.96176 -22.77404 -22.16824 -20.35156 -18.57924 -18.12260 -17.22993 -16.73135 -16.33440 -16.29807 -16.28179 -15.92436 -15.81360 -15.22122 -15.03382 -14.32613 -14.19767 -14.05024 -13.56429 -13.32408 -13.12382 -12.95141 -12.67408 -12.36854 -12.30665 -11.97048 -11.94470 -11.87791 -11.58582 -11.54522 -11.28102 -11.25527 -11.12698 -10.86645 -10.69564 -10.45896 -10.09683 -9.79047 -9.58738 -8.95792 -8.39822 -8.31781 -8.25156 -7.59903 -6.00461 -4.04986 0.51650 1.27024 2.10841 2.89105 2.94628 3.33192 3.39736 3.44681 3.58394 3.95953 4.10085 4.45168 4.50008 4.55327 4.64557 4.73997 4.76161 4.81060 4.89735 4.96891 5.05430 5.08930 5.12734 5.17816 5.31948 5.34809 5.50716 5.55783 5.68995 5.83608 5.96946 5.97662 6.04989 6.10368 6.28493 6.32426 6.49577 6.54472 6.65378 6.87271 7.14105 7.19656 7.49112 7.59047 7.96293 8.27555 8.46116 8.93939 9.12602 9.59917 11.07558 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.002590 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.642000 B =10809.126873 C =11508.637394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.532 3.468 14 O -0.542 6.542 15 C -0.170 4.170 16 C -0.059 4.059 17 C 0.022 3.978 18 C -0.176 4.176 19 C 0.164 3.836 20 O -0.313 6.313 21 C 0.027 3.973 22 C -0.297 4.297 23 C 0.163 3.837 24 O -0.313 6.313 25 C 0.027 3.973 26 C -0.170 4.170 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -11.430 25.428 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.320 3.680 14 O -0.422 6.422 15 C -0.191 4.191 16 C -0.079 4.079 17 C 0.022 3.978 18 C -0.195 4.195 19 C 0.119 3.881 20 O -0.226 6.226 21 C -0.068 4.068 22 C -0.316 4.316 23 C 0.117 3.883 24 O -0.226 6.226 25 C -0.068 4.068 26 C -0.188 4.188 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.219 -10.664 25.086 28.198 hybrid contribution 0.838 -0.567 0.076 1.015 sum -6.382 -11.231 25.162 28.284 Atomic orbital electron populations 1.22240 0.96691 1.01439 1.02464 1.21467 0.93579 0.84172 1.02727 1.48178 1.62870 1.13212 1.07746 1.19294 0.96304 0.93720 0.78075 1.21442 0.96889 1.31804 1.06223 0.92428 1.24936 0.97860 0.94931 0.96421 1.69937 1.35685 1.33491 1.14328 0.86497 0.84716 0.77630 0.78586 1.20672 1.21108 1.19862 1.18137 0.79255 0.86505 0.84108 1.90783 1.46090 1.17852 1.87454 1.23473 1.01583 1.00689 0.93305 1.22208 0.96173 0.99956 0.89588 1.18554 0.94684 0.92023 0.92563 1.20570 1.07559 0.94759 0.96613 1.18550 0.92833 0.83491 0.93238 1.86114 1.80478 1.24392 1.31576 1.23059 1.00892 0.98517 0.84315 1.21279 1.15358 0.96716 0.98271 1.18558 0.93736 0.90130 0.85835 1.86110 1.82625 1.41382 1.12516 1.23058 1.00784 0.97529 0.85410 1.20503 1.08119 1.01584 0.88639 0.92880 0.92043 0.92163 0.89886 0.91556 0.94921 0.93781 0.92751 0.85365 0.84175 0.84416 0.92744 0.88054 0.92727 0.84930 0.92730 0.92716 0.88087 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.10 1.72 5.84 -4.04 -0.02 1.70 16 3 N -0.59 -12.81 2.46 -176.70 -0.43 -13.25 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 5 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.53 11.51 7.61 -12.96 -0.10 11.41 16 14 O -0.54 -14.05 15.81 5.19 0.08 -13.97 16 15 C -0.17 -2.76 8.61 -37.50 -0.32 -3.08 16 16 C -0.06 -0.89 9.46 -37.15 -0.35 -1.24 16 17 C 0.02 0.29 5.87 -105.09 -0.62 -0.33 16 18 C -0.18 -2.17 9.35 -38.93 -0.36 -2.53 16 19 C 0.16 1.85 6.68 -39.31 -0.26 1.59 16 20 O -0.31 -3.20 10.49 -19.46 -0.20 -3.40 16 21 C 0.03 0.16 9.81 101.05 0.99 1.15 16 22 C -0.30 -2.98 8.03 -39.18 -0.31 -3.29 16 23 C 0.16 1.83 6.68 -39.31 -0.26 1.57 16 24 O -0.31 -3.20 10.49 -19.44 -0.20 -3.40 16 25 C 0.03 0.16 9.81 101.05 0.99 1.15 16 26 C -0.17 -2.08 9.73 -38.94 -0.38 -2.46 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.07 0.92 6.08 -51.93 -0.32 0.61 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.13 1.72 4.22 -52.49 -0.22 1.50 16 36 H 0.14 2.19 7.52 -52.49 -0.39 1.80 16 37 H 0.14 1.58 6.16 -52.49 -0.32 1.26 16 38 H 0.05 0.26 7.65 -51.93 -0.40 -0.13 16 39 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 41 H 0.13 0.96 4.48 -52.49 -0.24 0.73 16 42 H 0.05 0.26 7.65 -51.93 -0.40 -0.13 16 43 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -35.16 378.62 -6.80 -41.97 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.39 Total: -1.00 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.08 Total: -3.63 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.30 Total: -39.43 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.33 Total: -20.77 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.16 -6.80 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.589 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds