Wall clock time and date at job start Tue Mar 31 2020 12:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47372 * 2 1 4 4 C 1.35995 * 116.99925 * 180.02562 * 3 2 1 5 5 C 1.38095 * 119.99160 * 359.97438 * 4 3 2 6 6 C 1.39965 * 119.82662 * 180.02562 * 5 4 3 7 7 C 1.47002 * 120.09161 * 179.97438 * 6 5 4 8 8 C 1.34979 * 119.99435 * 180.02562 * 7 6 5 9 9 C 1.46252 * 119.99772 * 179.97438 * 8 7 6 10 10 O 1.21723 * 120.00375 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00186 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99825 * 0.02562 * 11 9 8 13 13 C 1.52999 * 109.47313 * 89.99678 * 12 11 9 14 14 C 1.46502 * 120.00468 * 179.97438 * 11 9 8 15 15 C 1.50709 * 109.46700 * 90.00090 * 14 11 9 16 16 H 1.08000 * 119.99960 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99699 * 180.02562 * 15 14 11 18 18 N 1.31510 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99672 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47290 * 59.99752 * 19 17 15 21 21 H 1.48502 * 109.47124 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47187 * 300.00006 * 19 17 15 23 23 C 1.39948 * 119.80831 * 359.97438 * 6 5 4 24 24 C 1.37755 * 119.97724 * 0.02562 * 23 6 5 25 25 C 1.38854 * 120.17461 * 359.97438 * 24 23 6 26 26 O 1.35818 * 119.90743 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46479 * 299.99810 * 1 2 3 28 28 H 1.09000 * 109.47180 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47154 * 240.00100 * 2 1 3 31 31 H 1.09000 * 109.47180 * 120.00191 * 2 1 3 32 32 H 1.07996 * 120.08779 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00099 * 0.02562 * 7 6 5 34 34 H 1.07997 * 120.00466 * 359.97438 * 8 7 6 35 35 H 1.09002 * 109.46758 * 210.00257 * 12 11 9 36 36 H 1.09000 * 109.47222 * 329.99563 * 12 11 9 37 37 H 1.08997 * 109.47241 * 299.99852 * 13 12 11 38 38 H 1.09001 * 109.47202 * 60.00328 * 13 12 11 39 39 H 1.09006 * 109.46641 * 179.97438 * 13 12 11 40 40 H 1.08995 * 109.47613 * 210.00225 * 14 11 9 41 41 H 1.08993 * 109.46911 * 330.00835 * 14 11 9 42 42 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 43 43 H 1.07996 * 120.01025 * 180.28076 * 23 6 5 44 44 H 1.07997 * 119.90923 * 180.02562 * 24 23 6 45 45 H 0.96700 * 114.00470 * 89.99617 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1956 0.4301 -0.0005 6 6 5.5827 0.6174 -0.0005 7 6 6.4833 -0.5444 0.0000 8 6 7.8206 -0.3615 0.0006 9 6 8.7167 -1.5174 0.0017 10 8 8.2566 -2.6443 0.0027 11 7 10.0521 -1.3348 0.0027 12 6 10.6060 0.0214 0.0033 13 6 10.7977 0.4935 1.4459 14 6 10.9498 -2.4926 0.0045 15 6 11.2588 -2.8907 -1.4159 16 1 10.8298 -2.3364 -2.2376 17 6 12.0892 -3.9625 -1.6663 18 7 12.6120 -4.6371 -0.6657 19 14 12.4728 -4.4554 -3.4267 20 1 13.1292 -3.3218 -4.1264 21 1 13.3827 -5.6290 -3.4251 22 1 11.2121 -4.8068 -4.1283 23 6 6.1096 1.9139 -0.0011 24 6 5.2633 3.0008 -0.0011 25 6 3.8874 2.8140 -0.0011 26 8 3.0580 3.8896 -0.0017 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7842 -0.5684 -0.0005 33 1 6.0750 -1.5442 0.0001 34 1 8.2290 0.6383 0.0001 35 1 11.5677 0.0213 -0.5099 36 1 9.9199 0.6943 -0.5111 37 1 9.8360 0.4937 1.9590 38 1 11.4839 -0.1793 1.9603 39 1 11.2102 1.5025 1.4462 40 1 11.8753 -2.2341 0.5189 41 1 10.4686 -3.3246 0.5184 42 1 13.1965 -5.3909 -0.8419 43 1 7.1793 2.0622 -0.0057 44 1 5.6711 4.0008 -0.0020 45 1 2.8178 4.2007 -0.8852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271333060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:07 Heat of formation + Delta-G solvation = -77.162830 kcal Electronic energy + Delta-G solvation = -25845.175054 eV Core-core repulsion = 22021.764729 eV Total energy + Delta-G solvation = -3823.410325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65616 -39.12472 -38.21656 -37.11128 -35.32729 -33.37661 -32.70059 -32.04355 -30.51791 -30.08684 -28.73463 -27.07265 -24.58606 -24.06973 -23.01578 -22.61111 -21.93734 -20.48773 -18.89257 -18.25209 -17.46607 -16.90447 -16.49449 -16.42349 -16.30736 -15.57016 -15.36783 -14.69172 -14.37224 -14.31217 -14.12029 -13.88599 -13.48085 -13.38344 -13.14616 -12.97433 -12.68718 -12.46056 -12.32971 -12.20745 -11.98732 -11.80277 -11.54727 -11.44864 -11.19343 -11.16130 -10.92391 -10.77430 -10.70860 -10.49964 -10.13990 -9.97979 -9.64961 -9.00893 -8.79559 -8.43181 -8.07440 -7.63867 -6.04089 -4.08929 0.42295 1.13026 2.00504 2.84182 3.31848 3.36171 3.39102 3.44758 3.88027 3.96605 4.04297 4.43563 4.49725 4.57519 4.57993 4.71982 4.82941 4.91199 4.98626 5.15809 5.19636 5.25785 5.31599 5.39669 5.42947 5.45212 5.54322 5.63321 5.66676 5.77005 5.91409 5.96726 6.01898 6.06038 6.23508 6.37530 6.43660 6.49235 6.59852 6.95505 7.09650 7.44664 7.48357 7.54257 7.92260 8.23391 8.41334 8.89493 9.07746 9.55964 11.03911 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002523 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.441793 B =11094.377498 C =11974.928255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.308 6.308 4 C 0.106 3.894 5 C -0.180 4.180 6 C -0.023 4.023 7 C -0.059 4.059 8 C -0.175 4.175 9 C 0.531 3.469 10 O -0.544 6.544 11 N -0.590 5.590 12 C 0.105 3.895 13 C -0.170 4.170 14 C 0.246 3.754 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.129 4.129 24 C -0.105 4.105 25 C 0.072 3.928 26 O -0.487 6.487 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 16.506 1.616 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.222 6.222 4 C 0.060 3.940 5 C -0.199 4.199 6 C -0.024 4.024 7 C -0.079 4.079 8 C -0.196 4.196 9 C 0.320 3.680 10 O -0.424 6.424 11 N -0.320 5.320 12 C -0.019 4.019 13 C -0.229 4.229 14 C 0.126 3.874 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.147 4.147 24 C -0.123 4.123 25 C 0.027 3.973 26 O -0.296 6.296 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.523 15.823 2.276 24.467 hybrid contribution 0.430 -0.447 -1.483 1.607 sum -18.093 15.376 0.793 23.757 Atomic orbital electron populations 1.21761 0.92586 1.02942 1.03473 1.22862 0.96029 0.81934 1.01755 1.86135 1.18208 1.29269 1.88590 1.19271 0.82942 0.93465 0.98354 1.21357 0.93058 0.98231 1.07244 1.18906 0.92267 0.93203 0.97996 1.22233 0.92816 0.97490 0.95362 1.23425 0.94350 0.99382 1.02435 1.18104 0.82847 0.88739 0.78305 1.90785 1.75987 1.25044 1.50553 1.48183 1.05719 1.07921 1.70185 1.21465 1.00202 0.83852 0.96394 1.22242 1.02013 1.00904 0.97697 1.19289 0.87848 0.82731 0.97485 1.21397 1.28522 1.14349 0.92249 0.92508 1.24935 0.95811 0.95936 0.97429 1.69921 1.32372 1.20350 1.30755 0.86556 0.78216 0.77959 0.84667 1.20250 1.21174 1.20179 1.21242 1.00289 0.91062 1.02123 1.21161 0.91268 0.99954 0.99957 1.17874 0.88776 0.83875 1.06812 1.84844 1.66358 1.45199 1.33187 0.91495 0.91574 0.90248 0.91796 0.91774 0.84552 0.84663 0.85446 0.89873 0.91622 0.92900 0.92011 0.92147 0.94913 0.93820 0.92658 0.84752 0.84427 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.31 -3.36 9.91 -34.41 -0.34 -3.70 16 4 C 0.11 1.21 6.69 -39.19 -0.26 0.94 16 5 C -0.18 -2.04 8.78 -38.99 -0.34 -2.38 16 6 C -0.02 -0.28 5.87 -105.06 -0.62 -0.90 16 7 C -0.06 -0.85 9.45 -37.19 -0.35 -1.20 16 8 C -0.18 -2.73 8.60 -37.52 -0.32 -3.05 16 9 C 0.53 11.25 7.60 -13.04 -0.10 11.16 16 10 O -0.54 -13.88 15.81 5.17 0.08 -13.80 16 11 N -0.59 -12.54 2.46 -176.76 -0.43 -12.98 16 12 C 0.11 1.67 5.84 -4.04 -0.02 1.65 16 13 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 14 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 15 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.13 -1.37 9.40 -39.12 -0.37 -1.73 16 24 C -0.10 -1.02 9.96 -39.53 -0.39 -1.42 16 25 C 0.07 0.78 6.72 -38.91 -0.26 0.52 16 26 O -0.49 -4.80 13.27 -33.85 -0.45 -5.25 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.14 1.34 6.28 -52.49 -0.33 1.01 16 33 H 0.14 2.05 7.52 -52.49 -0.39 1.66 16 34 H 0.13 1.58 4.21 -52.49 -0.22 1.36 16 35 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.07 0.86 6.09 -51.93 -0.32 0.54 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 1.21 6.15 -52.49 -0.32 0.89 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.38 2.03 9.06 45.56 0.41 2.44 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -35.44 381.72 -7.89 -43.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.69 Total: 1.17 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.52 Total: -5.48 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.30 Total: -38.90 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.71 Total: -22.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.44 -7.89 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271333060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.830 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds