Wall clock time and date at job start Tue Mar 31 2020 12:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47372 * 2 1 4 4 C 1.35995 * 116.99925 * 180.02562 * 3 2 1 5 5 C 1.38095 * 119.99160 * 359.97438 * 4 3 2 6 6 C 1.39965 * 119.82662 * 180.02562 * 5 4 3 7 7 C 1.47002 * 120.09161 * 179.97438 * 6 5 4 8 8 C 1.34979 * 119.99435 * 180.02562 * 7 6 5 9 9 C 1.46252 * 119.99772 * 179.97438 * 8 7 6 10 10 O 1.21723 * 120.00375 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00186 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99825 * 0.02562 * 11 9 8 13 13 C 1.52999 * 109.47313 * 89.99678 * 12 11 9 14 14 C 1.46502 * 120.00468 * 179.97438 * 11 9 8 15 15 C 1.50709 * 109.46700 * 90.00090 * 14 11 9 16 16 H 1.08000 * 119.99960 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99699 * 180.02562 * 15 14 11 18 18 N 1.31510 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99672 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47290 * 59.99752 * 19 17 15 21 21 H 1.48502 * 109.47124 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47187 * 300.00006 * 19 17 15 23 23 C 1.39948 * 119.80831 * 359.97438 * 6 5 4 24 24 C 1.37755 * 119.97724 * 0.02562 * 23 6 5 25 25 C 1.38854 * 120.17461 * 359.97438 * 24 23 6 26 26 O 1.35818 * 119.90743 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46479 * 299.99810 * 1 2 3 28 28 H 1.09000 * 109.47180 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47154 * 240.00100 * 2 1 3 31 31 H 1.09000 * 109.47180 * 120.00191 * 2 1 3 32 32 H 1.07996 * 120.08779 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00099 * 0.02562 * 7 6 5 34 34 H 1.07997 * 120.00466 * 359.97438 * 8 7 6 35 35 H 1.09002 * 109.46758 * 210.00257 * 12 11 9 36 36 H 1.09000 * 109.47222 * 329.99563 * 12 11 9 37 37 H 1.08997 * 109.47241 * 299.99852 * 13 12 11 38 38 H 1.09001 * 109.47202 * 60.00328 * 13 12 11 39 39 H 1.09006 * 109.46641 * 179.97438 * 13 12 11 40 40 H 1.08995 * 109.47613 * 210.00225 * 14 11 9 41 41 H 1.08993 * 109.46911 * 330.00835 * 14 11 9 42 42 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 43 43 H 1.07996 * 120.01025 * 180.28076 * 23 6 5 44 44 H 1.07997 * 119.90923 * 180.02562 * 24 23 6 45 45 H 0.96700 * 114.00470 * 89.99617 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1956 0.4301 -0.0005 6 6 5.5827 0.6174 -0.0005 7 6 6.4833 -0.5444 0.0000 8 6 7.8206 -0.3615 0.0006 9 6 8.7167 -1.5174 0.0017 10 8 8.2566 -2.6443 0.0027 11 7 10.0521 -1.3348 0.0027 12 6 10.6060 0.0214 0.0033 13 6 10.7977 0.4935 1.4459 14 6 10.9498 -2.4926 0.0045 15 6 11.2588 -2.8907 -1.4159 16 1 10.8298 -2.3364 -2.2376 17 6 12.0892 -3.9625 -1.6663 18 7 12.6120 -4.6371 -0.6657 19 14 12.4728 -4.4554 -3.4267 20 1 13.1292 -3.3218 -4.1264 21 1 13.3827 -5.6290 -3.4251 22 1 11.2121 -4.8068 -4.1283 23 6 6.1096 1.9139 -0.0011 24 6 5.2633 3.0008 -0.0011 25 6 3.8874 2.8140 -0.0011 26 8 3.0580 3.8896 -0.0017 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7842 -0.5684 -0.0005 33 1 6.0750 -1.5442 0.0001 34 1 8.2290 0.6383 0.0001 35 1 11.5677 0.0213 -0.5099 36 1 9.9199 0.6943 -0.5111 37 1 9.8360 0.4937 1.9590 38 1 11.4839 -0.1793 1.9603 39 1 11.2102 1.5025 1.4462 40 1 11.8753 -2.2341 0.5189 41 1 10.4686 -3.3246 0.5184 42 1 13.1965 -5.3909 -0.8419 43 1 7.1793 2.0622 -0.0057 44 1 5.6711 4.0008 -0.0020 45 1 2.8178 4.2007 -0.8852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271333060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:06 Heat of formation + Delta-G solvation = -100.456258 kcal Electronic energy + Delta-G solvation = -25846.185132 eV Core-core repulsion = 22021.764729 eV Total energy + Delta-G solvation = -3824.420403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46113 -40.71289 -38.98956 -37.97627 -36.98284 -34.99311 -34.26067 -32.68678 -31.65513 -31.30461 -29.89272 -28.74725 -25.90228 -24.96851 -24.49164 -23.88781 -22.67855 -21.69503 -19.69746 -19.58006 -18.69191 -18.45095 -18.05319 -17.39279 -17.19552 -16.93807 -16.36438 -16.23034 -15.85905 -15.60714 -15.07912 -14.75794 -14.65231 -14.56490 -14.33713 -14.11506 -13.68029 -13.60689 -13.42656 -13.27766 -13.15689 -13.13370 -12.96389 -12.72472 -12.59631 -12.41807 -12.23421 -12.16124 -11.88147 -11.82784 -11.74225 -11.51136 -10.96922 -10.70276 -10.64644 -9.68905 -9.44496 -8.93167 -8.22384 -6.37817 -0.57156 0.33615 0.91644 1.36294 1.40685 1.48204 2.14407 2.27145 2.38405 2.45746 2.75596 3.06567 3.20878 3.48475 3.73551 3.98444 3.99662 4.01272 4.07378 4.17831 4.22477 4.28277 4.35026 4.44015 4.51741 4.64616 4.76824 4.85851 4.88572 4.91264 4.95371 4.99669 5.03594 5.07934 5.18481 5.20705 5.25333 5.39487 5.41223 5.56696 5.57876 5.64692 5.86157 6.05745 6.24216 6.69352 6.78963 6.86707 7.26983 7.45711 8.84351 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002523 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.441793 B =11094.377498 C =11974.928255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.321 6.321 4 C 0.089 3.911 5 C -0.180 4.180 6 C -0.046 4.046 7 C -0.031 4.031 8 C -0.191 4.191 9 C 0.523 3.477 10 O -0.606 6.606 11 N -0.596 5.596 12 C 0.097 3.903 13 C -0.162 4.162 14 C 0.261 3.739 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.120 4.120 24 C -0.103 4.103 25 C 0.075 3.925 26 O -0.497 6.497 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.167 0.833 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.099 0.901 40 H 0.024 0.976 41 H -0.005 1.005 42 H 0.267 0.733 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.090 19.498 0.506 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.043 3.957 5 C -0.199 4.199 6 C -0.047 4.047 7 C -0.051 4.051 8 C -0.211 4.211 9 C 0.314 3.686 10 O -0.490 6.490 11 N -0.326 5.326 12 C -0.025 4.025 13 C -0.220 4.220 14 C 0.140 3.860 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.138 4.138 24 C -0.121 4.121 25 C 0.030 3.970 26 O -0.309 6.309 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.184 0.816 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.042 0.958 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -19.274 18.881 1.160 27.007 hybrid contribution 0.481 -1.295 -1.095 1.763 sum -18.793 17.586 0.065 25.738 Atomic orbital electron populations 1.21781 0.91163 1.04096 1.03346 1.23087 0.97209 0.80987 1.02083 1.86124 1.17986 1.30768 1.88662 1.19451 0.83262 0.93854 0.99143 1.21458 0.92990 0.98800 1.06637 1.18796 0.92058 0.93071 1.00740 1.22274 0.92871 0.97792 0.92146 1.23128 0.93491 0.98453 1.06011 1.19001 0.83150 0.89665 0.76754 1.90740 1.76951 1.27859 1.53492 1.48199 1.05573 1.08736 1.70063 1.21831 1.00490 0.81515 0.98655 1.22176 1.02087 1.02296 0.95428 1.18726 0.87768 0.83524 0.96026 1.21675 1.28709 1.14853 0.92960 0.92845 1.25884 0.95499 0.95764 1.02094 1.70048 1.32882 1.20800 1.33117 0.85454 0.77980 0.78259 0.79039 1.18326 1.20288 1.20339 1.21495 1.01529 0.90294 1.00432 1.21431 0.90589 1.01038 0.99030 1.18150 0.89513 0.83913 1.05457 1.84779 1.66293 1.44738 1.35134 0.91793 0.91476 0.88471 0.91288 0.91642 0.84023 0.86487 0.81620 0.90770 0.87802 0.92200 0.94424 0.88251 0.95804 0.98664 0.92370 0.82666 0.81636 0.73562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.32 -6.62 9.91 -79.45 -0.79 -7.41 16 4 C 0.09 1.89 6.69 22.53 0.15 2.04 16 5 C -0.18 -3.86 8.78 22.65 0.20 -3.67 16 6 C -0.05 -1.04 5.87 -20.15 -0.12 -1.16 16 7 C -0.03 -0.86 9.45 23.82 0.23 -0.63 16 8 C -0.19 -5.72 8.60 23.60 0.20 -5.52 16 9 C 0.52 22.76 7.60 86.33 0.66 23.42 16 10 O -0.61 -32.85 15.81 -4.42 -0.07 -32.92 16 11 N -0.60 -26.00 2.46 -831.34 -2.04 -28.04 16 12 C 0.10 2.95 5.84 86.38 0.50 3.46 16 13 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 14 C 0.26 14.45 5.16 85.64 0.44 14.90 16 15 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.38 5.46 84.66 0.46 0.84 16 18 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 19 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.12 -2.11 9.40 22.57 0.21 -1.90 16 24 C -0.10 -1.62 9.96 22.30 0.22 -1.40 16 25 C 0.08 1.43 6.72 22.71 0.15 1.59 16 26 O -0.50 -8.42 13.27 -77.47 -1.03 -9.45 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.95 7.66 -2.38 -0.02 0.93 16 31 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 32 H 0.14 2.74 6.28 -2.91 -0.02 2.72 16 33 H 0.12 3.68 7.52 -2.91 -0.02 3.66 16 34 H 0.17 3.52 4.21 -2.91 -0.01 3.51 16 35 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 36 H 0.10 2.36 6.09 -2.39 -0.01 2.35 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 41 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.16 2.04 6.15 -2.91 -0.02 2.02 16 44 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.41 3.11 9.06 -74.06 -0.67 2.44 16 Total: -1.00 -81.35 381.72 4.14 -77.21 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.34 Total: 12.79 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.42 Total: -2.83 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.76 Total: -84.74 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -1.89 Total: -49.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -81.35 4.14 -77.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271333060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.247 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds