Wall clock time and date at job start Tue Mar 31 2020 13:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46576 * 2 1 4 4 C 1.42904 * 113.99587 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47057 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47357 * 64.99625 * 5 4 3 7 7 C 1.42903 * 113.99969 * 180.02562 * 6 5 4 8 8 C 1.53489 * 114.20761 * 150.00375 * 7 6 5 9 9 N 1.47063 * 87.98680 * 139.65245 * 8 7 6 10 10 C 1.34777 * 136.05413 * 152.84005 * 9 8 7 11 11 O 1.21583 * 120.00300 * 354.33044 * 10 9 8 12 12 C 1.47646 * 119.99807 * 174.32703 * 10 9 8 13 13 C 1.40013 * 119.89411 * 352.73673 * 12 10 9 14 14 C 1.36322 * 120.10705 * 180.27368 * 13 12 10 15 15 C 1.40888 * 119.88802 * 359.97438 * 14 13 12 16 16 C 1.41110 * 120.09815 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00108 * 34.26432 * 16 15 14 18 18 C 1.40218 * 119.99864 * 214.25710 * 16 15 14 19 19 N 1.30649 * 119.99999 * 5.57296 * 18 16 15 20 20 Si 1.86803 * 120.00153 * 185.57209 * 18 16 15 21 21 H 1.48496 * 109.46972 * 60.00428 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47075 * 300.00340 * 20 18 16 24 24 C 1.40882 * 119.79790 * 0.02562 * 15 14 13 25 25 C 1.36323 * 119.88828 * 0.02562 * 24 15 14 26 26 C 1.47067 * 87.88395 * 333.10252 * 9 8 7 27 27 H 1.08999 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47417 * 299.99929 * 1 2 3 29 29 H 1.08997 * 109.47204 * 60.00249 * 1 2 3 30 30 H 1.08998 * 109.46950 * 240.00270 * 2 1 3 31 31 H 1.08997 * 109.47204 * 119.99751 * 2 1 3 32 32 H 1.08997 * 109.47144 * 59.99723 * 4 3 2 33 33 H 1.09005 * 109.47060 * 299.99887 * 4 3 2 34 34 H 1.08999 * 109.46665 * 304.99744 * 5 4 3 35 35 H 1.08999 * 109.47172 * 185.00126 * 5 4 3 36 36 H 1.09004 * 113.27822 * 16.93018 * 7 6 5 37 37 H 1.09002 * 113.46902 * 24.87195 * 8 7 6 38 38 H 1.09000 * 113.52074 * 254.44650 * 8 7 6 39 39 H 1.08007 * 119.94795 * 0.24677 * 13 12 10 40 40 H 1.08000 * 120.05272 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00012 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.05878 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.93937 * 179.97438 * 25 24 15 44 44 H 1.08998 * 113.46291 * 141.68076 * 26 9 8 45 45 H 1.08998 * 113.46242 * 272.11629 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 8 3.3985 3.5449 1.2217 7 6 3.7192 4.9336 1.3243 8 6 2.7298 5.7473 2.1699 9 7 3.8822 6.4692 2.7299 10 6 4.0995 7.6906 3.2566 11 8 3.2126 8.5222 3.2496 12 6 5.4145 8.0186 3.8423 13 6 6.3827 7.0178 3.9881 14 6 7.5963 7.3146 4.5335 15 6 7.8757 8.6312 4.9501 16 6 9.1302 8.9433 5.5157 17 1 10.0197 8.4386 5.1685 18 6 9.2221 9.9088 6.5283 19 7 8.1366 10.4406 7.0242 20 14 10.8964 10.4349 7.1683 21 1 11.6948 11.0064 6.0543 22 1 10.7214 11.4603 8.2280 23 1 11.6038 9.2566 7.7308 24 6 6.8983 9.6349 4.8013 25 6 5.6872 9.3281 4.2558 26 6 4.6946 5.2742 2.4560 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3491 3.4419 -0.8412 35 1 4.9080 3.0257 -0.0899 36 1 3.9694 5.3899 0.3665 37 1 2.1932 5.1487 2.9059 38 1 2.0680 6.3790 1.5773 39 1 6.1676 6.0088 3.6685 40 1 8.3424 6.5419 4.6460 41 1 8.2001 11.1083 7.7250 42 1 7.1078 10.6454 5.1196 43 1 4.9371 10.0968 4.1417 44 1 5.7007 5.5043 2.1055 45 1 4.6866 4.5483 3.2691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271979570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:11 Heat of formation + Delta-G solvation = -66.062626 kcal Electronic energy + Delta-G solvation = -25564.043707 eV Core-core repulsion = 21741.114723 eV Total energy + Delta-G solvation = -3822.928984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28496 -38.63856 -37.99693 -36.99241 -36.14165 -33.78877 -32.08831 -30.45343 -29.82702 -29.44574 -28.15950 -26.16633 -25.41396 -23.10445 -22.89843 -22.43785 -21.06880 -20.72553 -18.78950 -17.61087 -17.53351 -17.11531 -16.55893 -16.19423 -15.77676 -15.43171 -15.25349 -14.88511 -14.44735 -14.09399 -13.68211 -13.60801 -13.28184 -13.10099 -13.01826 -12.81550 -12.56692 -12.43036 -12.23456 -11.91560 -11.79282 -11.73648 -11.49611 -11.44556 -11.30017 -11.24016 -11.06570 -10.89894 -10.59444 -10.01348 -9.91905 -9.65009 -9.42935 -9.36540 -9.03973 -8.36829 -7.70553 -7.45761 -6.89683 -4.60790 2.19596 2.95034 2.98015 3.00324 3.01270 3.04778 3.34259 3.58795 3.79297 3.90807 4.30172 4.59912 4.65522 4.70999 4.79519 4.87866 4.90525 5.00911 5.02328 5.13694 5.23035 5.34616 5.41958 5.46989 5.51167 5.58012 5.58779 5.63735 5.75661 5.80241 5.89020 6.02665 6.25898 6.39502 6.83364 6.87041 6.88151 7.03786 7.04866 7.10998 7.47077 7.58856 7.83397 7.88680 8.07770 8.24951 8.45194 8.66159 8.75529 8.96326 10.03325 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.002099 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.178855 B =13336.419938 C =14101.008550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.360 6.360 7 C 0.047 3.953 8 C 0.106 3.894 9 N -0.648 5.648 10 C 0.604 3.396 11 O -0.565 6.565 12 C -0.267 4.267 13 C -0.064 4.064 14 C -0.228 4.228 15 C 0.130 3.870 16 C -0.452 4.452 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.787 5.787 20 Si 0.918 3.082 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.168 4.168 25 C -0.041 4.041 26 C 0.086 3.914 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.286 0.714 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -17.091 -12.045 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.015 4.015 6 O -0.278 6.278 7 C -0.012 4.012 8 C -0.017 4.017 9 N -0.386 5.386 10 C 0.403 3.597 11 O -0.446 6.446 12 C -0.272 4.272 13 C -0.083 4.083 14 C -0.247 4.247 15 C 0.127 3.873 16 C -0.481 4.481 17 H 0.100 0.900 18 C -0.148 4.148 19 N -0.411 5.411 20 Si 0.742 3.258 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.187 4.187 25 C -0.060 4.060 26 C -0.038 4.038 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.639 -16.185 -11.609 20.995 hybrid contribution 1.043 0.002 0.338 1.097 sum -5.596 -16.183 -11.270 20.500 Atomic orbital electron populations 1.21738 0.93721 1.02126 1.03312 1.22456 0.95746 0.83910 0.99891 1.87981 1.20552 1.26148 1.95380 1.22528 0.82182 0.95667 1.00901 1.22603 0.98621 0.92505 0.87746 1.87987 1.80149 1.21854 1.37774 1.23994 0.97045 0.81897 0.98232 1.23003 0.91323 0.92059 0.95354 1.49052 1.12643 1.12443 1.64482 1.18209 0.88442 0.77942 0.75119 1.90665 1.47062 1.46977 1.59856 1.18877 0.93996 0.96153 1.18153 1.20849 0.93635 0.96944 0.96869 1.20798 0.97035 0.96347 1.10515 1.17835 0.92919 0.90212 0.86300 1.19716 0.94557 1.17730 1.16098 0.89971 1.26041 0.98699 0.94144 0.95941 1.69693 1.29704 1.20927 1.20795 0.86205 0.81493 0.79115 0.79012 1.18688 1.20128 1.18830 1.21054 0.93968 0.99979 1.03738 1.20530 0.96283 0.94059 0.95156 1.23482 0.96972 0.86544 0.96837 0.91216 0.91641 0.91911 0.93632 0.93366 0.91880 0.92281 0.92213 0.91360 0.88030 0.89577 0.90380 0.87968 0.88377 0.90328 0.86048 0.88052 0.89604 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.42 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.87 10.31 -40.08 -0.41 -4.28 16 4 C 0.06 0.51 6.32 37.16 0.23 0.74 16 5 C 0.06 0.53 6.16 37.16 0.23 0.76 16 6 O -0.36 -4.15 10.36 -40.08 -0.42 -4.57 16 7 C 0.05 0.56 4.65 -26.36 -0.12 0.44 16 8 C 0.11 1.52 8.46 -8.52 -0.07 1.45 16 9 N -0.65 -11.51 3.67 -186.65 -0.68 -12.20 16 10 C 0.60 13.57 7.99 -12.42 -0.10 13.47 16 11 O -0.56 -14.29 17.12 5.29 0.09 -14.20 16 12 C -0.27 -6.28 5.89 -104.73 -0.62 -6.90 16 13 C -0.06 -1.40 9.05 -39.61 -0.36 -1.76 16 14 C -0.23 -5.30 9.73 -39.27 -0.38 -5.68 16 15 C 0.13 3.35 5.51 -106.80 -0.59 2.76 16 16 C -0.45 -11.36 9.03 -37.75 -0.34 -11.71 16 17 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 18 C 0.07 1.71 5.31 -17.31 -0.09 1.61 16 19 N -0.79 -19.76 10.94 55.56 0.61 -19.15 16 20 Si 0.92 17.82 29.57 -169.99 -5.03 12.80 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 24 C -0.17 -4.34 8.56 -39.27 -0.34 -4.68 16 25 C -0.04 -1.02 9.52 -39.61 -0.38 -1.40 16 26 C 0.09 1.17 5.90 -8.65 -0.05 1.12 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.86 4.20 -52.48 -0.22 1.64 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.29 6.53 8.29 -40.82 -0.34 6.20 16 42 H 0.12 3.21 6.45 -52.49 -0.34 2.87 16 43 H 0.10 2.48 7.65 -52.49 -0.40 2.08 16 44 H 0.09 1.13 6.82 -51.93 -0.35 0.78 16 45 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -31.14 377.22 -9.26 -40.40 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.76 Total: 5.23 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.34 Total: -9.71 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: -0.08 Total: -31.35 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.74 Total: -23.05 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.14 -9.26 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271979570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.659 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds