Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46576 * 2 1 4 4 C 1.42904 * 113.99587 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47057 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47357 * 64.99625 * 5 4 3 7 7 C 1.42903 * 113.99969 * 180.02562 * 6 5 4 8 8 C 1.53489 * 114.20761 * 150.00375 * 7 6 5 9 9 N 1.47063 * 87.98680 * 139.65245 * 8 7 6 10 10 C 1.34777 * 136.05413 * 152.84005 * 9 8 7 11 11 O 1.21583 * 120.00300 * 354.33044 * 10 9 8 12 12 C 1.47646 * 119.99807 * 174.32703 * 10 9 8 13 13 C 1.40013 * 119.89411 * 352.73673 * 12 10 9 14 14 C 1.36322 * 120.10705 * 180.27368 * 13 12 10 15 15 C 1.40888 * 119.88802 * 359.97438 * 14 13 12 16 16 C 1.41110 * 120.09815 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00108 * 34.26432 * 16 15 14 18 18 C 1.40218 * 119.99864 * 214.25710 * 16 15 14 19 19 N 1.30649 * 119.99999 * 5.57296 * 18 16 15 20 20 Si 1.86803 * 120.00153 * 185.57209 * 18 16 15 21 21 H 1.48496 * 109.46972 * 60.00428 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47075 * 300.00340 * 20 18 16 24 24 C 1.40882 * 119.79790 * 0.02562 * 15 14 13 25 25 C 1.36323 * 119.88828 * 0.02562 * 24 15 14 26 26 C 1.47067 * 87.88395 * 333.10252 * 9 8 7 27 27 H 1.08999 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47417 * 299.99929 * 1 2 3 29 29 H 1.08997 * 109.47204 * 60.00249 * 1 2 3 30 30 H 1.08998 * 109.46950 * 240.00270 * 2 1 3 31 31 H 1.08997 * 109.47204 * 119.99751 * 2 1 3 32 32 H 1.08997 * 109.47144 * 59.99723 * 4 3 2 33 33 H 1.09005 * 109.47060 * 299.99887 * 4 3 2 34 34 H 1.08999 * 109.46665 * 304.99744 * 5 4 3 35 35 H 1.08999 * 109.47172 * 185.00126 * 5 4 3 36 36 H 1.09004 * 113.27822 * 16.93018 * 7 6 5 37 37 H 1.09002 * 113.46902 * 24.87195 * 8 7 6 38 38 H 1.09000 * 113.52074 * 254.44650 * 8 7 6 39 39 H 1.08007 * 119.94795 * 0.24677 * 13 12 10 40 40 H 1.08000 * 120.05272 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00012 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.05878 * 179.97438 * 24 15 14 43 43 H 1.08001 * 119.93937 * 179.97438 * 25 24 15 44 44 H 1.08998 * 113.46291 * 141.68076 * 26 9 8 45 45 H 1.08998 * 113.46242 * 272.11629 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 8 3.3985 3.5449 1.2217 7 6 3.7192 4.9336 1.3243 8 6 2.7298 5.7473 2.1699 9 7 3.8822 6.4692 2.7299 10 6 4.0995 7.6906 3.2566 11 8 3.2126 8.5222 3.2496 12 6 5.4145 8.0186 3.8423 13 6 6.3827 7.0178 3.9881 14 6 7.5963 7.3146 4.5335 15 6 7.8757 8.6312 4.9501 16 6 9.1302 8.9433 5.5157 17 1 10.0197 8.4386 5.1685 18 6 9.2221 9.9088 6.5283 19 7 8.1366 10.4406 7.0242 20 14 10.8964 10.4349 7.1683 21 1 11.6948 11.0064 6.0543 22 1 10.7214 11.4603 8.2280 23 1 11.6038 9.2566 7.7308 24 6 6.8983 9.6349 4.8013 25 6 5.6872 9.3281 4.2558 26 6 4.6946 5.2742 2.4560 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3491 3.4419 -0.8412 35 1 4.9080 3.0257 -0.0899 36 1 3.9694 5.3899 0.3665 37 1 2.1932 5.1487 2.9059 38 1 2.0680 6.3790 1.5773 39 1 6.1676 6.0088 3.6685 40 1 8.3424 6.5419 4.6460 41 1 8.2001 11.1083 7.7250 42 1 7.1078 10.6454 5.1196 43 1 4.9371 10.0968 4.1417 44 1 5.7007 5.5043 2.1055 45 1 4.6866 4.5483 3.2691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271979570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = -85.059053 kcal Electronic energy + Delta-G solvation = -25564.867454 eV Core-core repulsion = 21741.114723 eV Total energy + Delta-G solvation = -3823.752730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59771 -39.83612 -39.07944 -38.58254 -37.27451 -35.61973 -32.71558 -32.15601 -31.62258 -30.46649 -29.39286 -27.60285 -26.91972 -24.01220 -23.63220 -23.47700 -22.81631 -22.28835 -20.27261 -19.36169 -18.52624 -18.06968 -17.78328 -17.26552 -17.09169 -16.86705 -16.20699 -15.93223 -15.74258 -15.58268 -15.06727 -14.85915 -14.66909 -14.39528 -14.18895 -14.01771 -13.88622 -13.61407 -13.54327 -13.31563 -13.16513 -12.83921 -12.76957 -12.64347 -12.40259 -12.32812 -12.18340 -12.07077 -11.82458 -11.71115 -11.36970 -11.17172 -10.86347 -10.50640 -10.39079 -9.83095 -9.58809 -9.32370 -8.69914 -6.51773 0.36851 1.10599 1.39446 1.44021 1.52568 1.76752 2.04443 2.18657 2.69574 2.80307 2.84441 3.24945 3.62094 3.72769 3.91457 4.06093 4.19391 4.24001 4.30187 4.31280 4.37533 4.41346 4.47050 4.52419 4.53519 4.59152 4.60943 4.63260 4.72211 4.82798 4.93419 4.94929 4.98713 5.05314 5.07341 5.17419 5.24827 5.29761 5.59018 5.74422 5.97062 6.00138 6.18562 6.19343 6.36237 6.55236 6.70128 6.78089 6.87086 7.26503 8.25500 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.002099 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.178855 B =13336.419938 C =14101.008550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.060 3.940 5 C 0.054 3.946 6 O -0.373 6.373 7 C 0.075 3.925 8 C 0.097 3.903 9 N -0.652 5.652 10 C 0.600 3.400 11 O -0.607 6.607 12 C -0.277 4.277 13 C -0.053 4.053 14 C -0.234 4.234 15 C 0.102 3.898 16 C -0.479 4.479 17 H 0.092 0.908 18 C 0.028 3.972 19 N -0.823 5.823 20 Si 0.993 3.007 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.186 4.186 25 C -0.055 4.055 26 C 0.079 3.921 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.292 0.708 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -19.742 -13.098 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.332 6.332 4 C -0.016 4.016 5 C -0.022 4.022 6 O -0.291 6.291 7 C 0.016 3.984 8 C -0.026 4.026 9 N -0.387 5.387 10 C 0.397 3.603 11 O -0.491 6.491 12 C -0.282 4.282 13 C -0.071 4.071 14 C -0.253 4.253 15 C 0.099 3.901 16 C -0.507 4.507 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.448 5.448 20 Si 0.813 3.187 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.179 1.179 24 C -0.205 4.205 25 C -0.075 4.075 26 C -0.044 4.044 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.361 -18.909 -12.696 23.399 hybrid contribution 0.521 0.683 0.582 1.038 sum -4.840 -18.226 -12.114 22.414 Atomic orbital electron populations 1.21768 0.93562 1.03165 1.02409 1.22618 0.95996 0.83078 1.00858 1.87941 1.21869 1.27746 1.95609 1.22685 0.81372 0.95449 1.02134 1.22893 1.00140 0.92672 0.86510 1.87975 1.80364 1.21216 1.39527 1.23649 0.94376 0.82323 0.98030 1.23269 0.91209 0.92104 0.95992 1.48968 1.15334 1.12000 1.62443 1.17989 0.87547 0.79288 0.75440 1.90630 1.47958 1.48861 1.61656 1.19140 0.95271 0.95896 1.17861 1.21173 0.92354 0.98242 0.95308 1.21072 0.98159 0.95870 1.10239 1.18213 0.93400 0.91297 0.87172 1.20049 0.94756 1.19053 1.16874 0.88953 1.27002 1.02610 0.93506 0.95650 1.69779 1.32091 1.21512 1.21430 0.85074 0.76304 0.78878 0.78434 1.18061 1.19593 1.17876 1.20959 0.94858 0.99600 1.05131 1.20587 0.95917 0.95126 0.95826 1.23772 0.97640 0.84800 0.98153 0.89257 0.92975 0.92331 0.91991 0.92980 0.89345 0.92271 0.91820 0.88974 0.86125 0.88989 0.90469 0.84041 0.86187 0.89754 0.87842 0.88960 0.88436 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.41 -7.58 10.31 -144.34 -1.49 -9.07 16 4 C 0.06 0.78 6.32 71.98 0.45 1.23 16 5 C 0.05 0.74 6.16 71.98 0.44 1.18 16 6 O -0.37 -7.47 10.36 -144.34 -1.50 -8.97 16 7 C 0.08 1.56 4.65 30.84 0.14 1.70 16 8 C 0.10 2.62 8.46 83.17 0.70 3.32 16 9 N -0.65 -22.21 3.67 -863.17 -3.16 -25.38 16 10 C 0.60 27.03 7.99 86.73 0.69 27.72 16 11 O -0.61 -31.51 17.12 -3.98 -0.07 -31.57 16 12 C -0.28 -13.13 5.89 -19.93 -0.12 -13.25 16 13 C -0.05 -2.21 9.05 22.25 0.20 -2.01 16 14 C -0.23 -10.70 9.73 22.47 0.22 -10.48 16 15 C 0.10 5.34 5.51 -21.28 -0.12 5.22 16 16 C -0.48 -24.24 9.03 23.46 0.21 -24.03 16 17 H 0.09 4.33 7.86 -2.91 -0.02 4.30 16 18 C 0.03 1.36 5.31 85.35 0.45 1.82 16 19 N -0.82 -42.43 10.94 21.87 0.24 -42.19 16 20 Si 0.99 36.15 29.57 68.60 2.03 38.18 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 22 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 23 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 24 C -0.19 -10.04 8.56 22.47 0.19 -9.85 16 25 C -0.06 -2.87 9.52 22.25 0.21 -2.66 16 26 C 0.08 1.92 5.90 83.09 0.49 2.41 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.12 2.08 7.88 -2.38 -0.02 2.06 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.14 4.71 4.20 -2.91 -0.01 4.70 16 40 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.29 13.65 8.29 -92.71 -0.77 12.89 16 42 H 0.10 5.83 6.45 -2.91 -0.02 5.81 16 43 H 0.09 4.82 7.65 -2.91 -0.02 4.80 16 44 H 0.10 2.20 6.82 -2.39 -0.02 2.18 16 45 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 Total: -1.00 -69.77 377.22 2.44 -67.33 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.98 Total: 29.27 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.40 Total: -17.59 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -2.93 Total: -67.57 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -3.05 Total: -49.61 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -69.77 2.44 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271979570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.733 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds