Wall clock time and date at job start Tue Mar 31 2020 13:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47235 * 2 1 4 4 C 1.34223 * 117.00195 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00470 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.72959 * 298.36807 * 6 4 3 8 8 C 1.54944 * 110.66184 * 61.45567 * 6 4 3 9 9 C 1.54596 * 103.07999 * 155.94110 * 8 6 4 10 10 C 1.53993 * 105.14065 * 337.95392 * 9 8 6 11 11 N 1.47900 * 107.05909 * 358.77569 * 10 9 8 12 12 C 1.46903 * 111.00280 * 145.84283 * 11 10 9 13 13 C 1.50695 * 109.46941 * 290.12911 * 12 11 10 14 14 C 1.38300 * 119.93217 * 269.72269 * 13 12 11 15 15 C 1.38098 * 120.07317 * 179.72773 * 14 13 12 16 16 C 1.38878 * 119.92688 * 0.52914 * 15 14 13 17 17 O 1.35754 * 120.07317 * 179.72672 * 16 15 14 18 18 C 1.34824 * 117.00637 * 174.48190 * 17 16 15 19 19 H 1.08003 * 119.99792 * 5.06001 * 18 17 16 20 20 C 1.38654 * 120.00223 * 185.05712 * 18 17 16 21 21 N 1.31553 * 119.99869 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00021 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47326 * 89.99867 * 22 20 18 24 24 H 1.48500 * 109.47101 * 210.00107 * 22 20 18 25 25 H 1.48504 * 109.47355 * 329.99971 * 22 20 18 26 26 C 1.38883 * 119.86490 * 359.74288 * 16 15 14 27 27 C 1.38097 * 119.92750 * 0.02562 * 26 16 15 28 28 H 1.09008 * 109.47313 * 300.00073 * 1 2 3 29 29 H 1.08993 * 109.47375 * 59.99684 * 1 2 3 30 30 H 1.08995 * 109.47614 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47227 * 239.99665 * 2 1 3 32 32 H 1.09002 * 109.46820 * 119.99718 * 2 1 3 33 33 H 1.08997 * 110.72413 * 37.49596 * 8 6 4 34 34 H 1.08999 * 110.72525 * 274.38005 * 8 6 4 35 35 H 1.08999 * 110.31027 * 96.86772 * 9 8 6 36 36 H 1.08996 * 110.31095 * 219.03786 * 9 8 6 37 37 H 1.09004 * 109.91969 * 118.12732 * 10 9 8 38 38 H 1.09004 * 109.91732 * 239.22540 * 10 9 8 39 39 H 1.09000 * 109.46709 * 50.13004 * 12 11 10 40 40 H 1.09001 * 109.47303 * 170.12679 * 12 11 10 41 41 H 1.08004 * 119.96270 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.03731 * 180.27016 * 15 14 13 43 43 H 0.97002 * 120.00039 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03602 * 179.97438 * 26 16 15 45 45 H 1.07998 * 119.96561 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.6211 3.4785 -0.8975 8 6 3.4890 3.7081 1.2729 9 6 4.5960 4.7762 1.4275 10 6 5.8039 4.2186 0.6520 11 7 5.4055 2.8976 0.1195 12 6 6.0313 2.6453 -1.1854 13 6 5.4210 3.5558 -2.2195 14 6 4.3130 3.1414 -2.9360 15 6 3.7480 3.9756 -3.8804 16 6 4.3003 5.2275 -4.1182 17 8 3.7506 6.0477 -5.0499 18 6 4.2637 7.2904 -5.1507 19 1 5.1278 7.5670 -4.5647 20 6 3.6822 8.2133 -6.0066 21 7 4.1832 9.4257 -6.1053 22 14 2.1874 7.7351 -7.0196 23 1 0.9522 8.0393 -6.2533 24 1 2.1838 8.5040 -8.2900 25 1 2.2377 6.2818 -7.3208 26 6 5.4164 5.6385 -3.4012 27 6 5.9739 4.8016 -2.4547 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.4696 3.0448 2.1375 34 1 2.5167 4.1788 1.1276 35 1 4.2721 5.7223 0.9939 36 1 4.8499 4.9084 2.4792 37 1 6.0592 4.8884 -0.1693 38 1 6.6572 4.1104 1.3216 39 1 7.1021 2.8381 -1.1180 40 1 5.8665 1.6069 -1.4728 41 1 3.8867 2.1659 -2.7538 42 1 2.8801 3.6532 -4.4365 43 1 3.7762 10.0714 -6.7038 44 1 5.8484 6.6113 -3.5841 45 1 6.8420 5.1204 -1.8970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274325541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:39 Heat of formation + Delta-G solvation = -93.841500 kcal Electronic energy + Delta-G solvation = -27383.444968 eV Core-core repulsion = 23559.311402 eV Total energy + Delta-G solvation = -3824.133566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94414 -41.02178 -39.90296 -38.07800 -37.46167 -34.57245 -33.79253 -32.71725 -32.06624 -30.55479 -30.34202 -27.56763 -26.09782 -24.85040 -23.90240 -23.26499 -22.29369 -21.82960 -20.99597 -19.85736 -19.15423 -18.80427 -17.73010 -17.57367 -17.05889 -16.71579 -16.28652 -15.89120 -15.70289 -15.46822 -15.38719 -15.24955 -14.92058 -14.46086 -14.34891 -14.25935 -14.12176 -13.76293 -13.56948 -13.15798 -13.06180 -12.92465 -12.82017 -12.59886 -12.53034 -12.44970 -12.43476 -12.26969 -12.08966 -11.92378 -11.60061 -11.50477 -11.33092 -11.26849 -10.91976 -9.88036 -9.50764 -9.08509 -8.52228 -6.25035 0.44258 0.50191 1.17077 1.30789 1.33899 1.50402 1.55197 2.26071 2.67355 2.97302 3.04048 3.15354 3.52799 3.55864 3.87694 3.91714 3.99483 4.01368 4.04783 4.09481 4.12213 4.27764 4.33396 4.35367 4.46620 4.52589 4.67809 4.75427 4.83450 4.85555 4.88018 4.93058 4.95868 5.00123 5.07096 5.13784 5.15310 5.25729 5.29889 5.45508 5.47377 5.59616 5.72105 5.77710 5.84036 5.94652 6.14212 6.77722 6.82009 7.54613 8.59025 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.003667 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.972184 B = 7634.139180 C = 8680.270889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.363 6.363 4 C 0.478 3.522 5 O -0.518 6.518 6 C 0.054 3.946 7 H 0.098 0.902 8 C -0.106 4.106 9 C -0.126 4.126 10 C 0.024 3.976 11 N -0.492 5.492 12 C 0.099 3.901 13 C -0.189 4.189 14 C -0.062 4.062 15 C -0.188 4.188 16 C 0.128 3.872 17 O -0.243 6.243 18 C -0.400 4.400 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.264 1.264 26 C -0.230 4.230 27 C -0.053 4.053 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.285 0.715 44 H 0.113 0.887 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -15.472 15.791 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.280 6.280 4 C 0.320 3.680 5 O -0.406 6.406 6 C -0.055 4.055 7 H 0.116 0.884 8 C -0.144 4.144 9 C -0.164 4.164 10 C -0.103 4.103 11 N -0.216 5.216 12 C -0.029 4.029 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.207 4.207 16 C 0.079 3.921 17 O -0.150 6.150 18 C -0.476 4.476 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.561 5.561 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.189 1.189 26 C -0.249 4.249 27 C -0.072 4.072 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.540 -16.058 15.903 22.876 hybrid contribution -0.402 0.869 -1.420 1.713 sum -3.943 -15.189 14.483 21.354 Atomic orbital electron populations 1.21826 0.90544 1.04351 1.03655 1.23280 0.96982 0.79159 1.02538 1.86516 1.23833 1.33818 1.83795 1.23494 0.80643 0.92147 0.71678 1.90620 1.60898 1.43478 1.45604 1.22697 0.90641 0.89548 1.02634 0.88440 1.22440 1.00011 0.97203 0.94735 1.22396 0.93825 0.97969 1.02190 1.23110 0.99429 0.88531 0.99242 1.64960 1.02669 1.30692 1.23262 1.21199 0.99191 0.97725 0.84737 1.20329 0.99365 0.97029 1.02361 1.20730 0.95235 0.98100 0.93964 1.20417 1.03680 0.92973 1.03664 1.19599 0.92673 0.91170 0.88671 1.83523 1.57088 1.23678 1.50691 1.20711 1.14198 0.85488 1.27197 0.89827 1.25238 1.01391 0.93853 0.98079 1.69719 1.42670 1.04784 1.38880 0.85267 0.78540 0.79031 0.78212 1.18952 1.19229 1.18878 1.21302 0.99445 1.02166 1.01998 1.20938 0.98587 0.92598 0.95042 0.91084 0.91696 0.88087 0.91580 0.91032 0.90039 0.89016 0.91108 0.88550 0.92656 0.88296 0.88318 0.90336 0.85579 0.85511 0.90509 0.86907 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.29 71.98 0.74 -1.08 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.36 -8.57 10.20 -51.35 -0.52 -9.10 16 4 C 0.48 12.64 7.13 71.23 0.51 13.15 16 5 O -0.52 -15.96 15.45 21.95 0.34 -15.62 16 6 C 0.05 1.34 2.34 44.42 0.10 1.44 16 7 H 0.10 2.73 4.88 -2.39 -0.01 2.72 16 8 C -0.11 -2.08 6.46 31.80 0.21 -1.88 16 9 C -0.13 -2.28 6.93 31.47 0.22 -2.06 16 10 C 0.02 0.49 6.46 86.45 0.56 1.05 16 11 N -0.49 -11.98 4.87 -865.85 -4.21 -16.19 16 12 C 0.10 2.51 5.43 85.55 0.46 2.97 16 13 C -0.19 -5.61 3.95 -19.84 -0.08 -5.68 16 14 C -0.06 -1.96 7.49 22.25 0.17 -1.79 16 15 C -0.19 -7.14 9.99 22.39 0.22 -6.91 16 16 C 0.13 5.83 6.65 22.58 0.15 5.98 16 17 O -0.24 -12.90 8.59 -22.72 -0.20 -13.10 16 18 C -0.40 -23.01 9.95 67.92 0.68 -22.33 16 19 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 20 C 0.01 0.76 5.49 84.83 0.47 1.22 16 21 N -0.92 -53.98 13.96 21.61 0.30 -53.68 16 22 Si 0.97 44.67 28.62 68.60 1.96 46.64 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.23 -9.60 9.17 22.39 0.21 -9.40 16 27 C -0.05 -1.72 8.18 22.25 0.18 -1.54 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.23 4.86 -2.38 -0.01 1.22 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.18 8.02 -2.39 -0.02 2.16 16 40 H 0.08 2.14 7.41 -2.39 -0.02 2.12 16 41 H 0.13 3.58 7.95 -2.91 -0.02 3.56 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 45 H 0.14 3.73 7.16 -2.91 -0.02 3.71 16 Total: -1.00 -66.76 364.14 3.90 -62.85 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 1.00 Total: 23.63 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 5.24 Total: -25.44 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -3.91 Total: -69.87 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.38 Total: -37.81 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.96 Total: 46.64 kcal Total: -66.76 3.90 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.990 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds