Wall clock time and date at job start Tue Mar 31 2020 13:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47727 * 2 1 4 4 C 1.42893 * 114.00242 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.85181 * 18.80651 * 4 3 2 6 6 C 1.53961 * 113.53791 * 247.49347 * 4 3 2 7 7 C 1.53781 * 87.01910 * 270.81133 * 6 4 3 8 8 H 1.09005 * 113.61155 * 89.23119 * 7 6 4 9 9 N 1.46496 * 113.61295 * 220.04392 * 7 6 4 10 10 C 1.34777 * 120.00249 * 254.41509 * 9 7 6 11 11 O 1.21548 * 119.99957 * 359.72545 * 10 9 7 12 12 C 1.47889 * 119.99738 * 179.72739 * 10 9 7 13 13 C 1.39914 * 120.02940 * 0.02562 * 12 10 9 14 14 C 1.38327 * 120.36066 * 179.97438 * 13 12 10 15 15 C 1.37759 * 120.41123 * 359.97438 * 14 13 12 16 16 C 1.40746 * 120.03748 * 0.02562 * 15 14 13 17 17 C 1.41436 * 120.17477 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00431 * 24.35940 * 17 16 15 19 19 C 1.39944 * 119.99993 * 204.36214 * 17 16 15 20 20 N 1.30827 * 119.99726 * 17.73873 * 19 17 16 21 21 Si 1.86801 * 119.99996 * 197.74339 * 19 17 16 22 22 H 1.48494 * 109.47182 * 94.68688 * 21 19 17 23 23 H 1.48507 * 109.46915 * 214.68793 * 21 19 17 24 24 H 1.48500 * 109.47163 * 334.68465 * 21 19 17 25 25 C 1.38996 * 120.02043 * 179.72324 * 12 10 9 26 26 C 1.53778 * 87.17489 * 334.63741 * 7 6 4 27 27 H 1.08992 * 113.61585 * 270.83806 * 26 7 6 28 28 O 1.42899 * 113.61126 * 139.93894 * 26 7 6 29 29 C 1.42903 * 114.00295 * 150.00464 * 28 26 7 30 30 H 1.08999 * 109.46989 * 300.00083 * 1 2 3 31 31 H 1.08999 * 109.47099 * 59.99863 * 1 2 3 32 32 H 1.09003 * 109.47755 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46989 * 239.99917 * 2 1 3 34 34 H 1.08999 * 109.46967 * 120.00676 * 2 1 3 35 35 H 1.09003 * 113.60996 * 156.29507 * 6 4 3 36 36 H 1.08996 * 113.66288 * 25.34531 * 6 4 3 37 37 H 0.96999 * 119.99955 * 74.14746 * 9 7 6 38 38 H 1.08002 * 119.82097 * 359.97438 * 13 12 10 39 39 H 1.07997 * 119.79579 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.97990 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99766 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.20525 * 0.02562 * 25 12 10 43 43 H 1.09005 * 109.46406 * 299.99692 * 29 28 26 44 44 H 1.08999 * 109.47511 * 59.98981 * 29 28 26 45 45 H 1.08997 * 109.47594 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.9280 0.5455 -0.3229 6 6 4.0006 2.0472 1.3047 7 6 3.8392 3.4326 0.6570 8 1 2.8647 3.8871 0.8354 9 7 4.9517 4.3440 0.9359 10 6 4.7914 5.3543 1.8135 11 8 3.7222 5.5122 2.3697 12 6 5.9163 6.2707 2.0996 13 6 7.1470 6.0898 1.4592 14 6 8.2037 6.9432 1.7212 15 6 8.0566 7.9811 2.6150 16 6 6.8260 8.1788 3.2689 17 6 6.6717 9.2438 4.1866 18 1 7.3049 10.1156 4.1137 19 6 5.6984 9.1680 5.1893 20 7 5.1752 8.0117 5.5069 21 14 5.1461 10.7177 6.0741 22 1 3.9284 11.2559 5.4164 23 1 4.8422 10.3966 7.4918 24 1 6.2288 11.7325 6.0175 25 6 5.7498 7.3162 3.0002 26 6 3.9491 2.7249 -0.7039 27 1 4.9725 2.6341 -1.0675 28 8 3.0520 3.2389 -1.6903 29 6 3.5384 3.1332 -3.0299 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.0384 1.7707 1.4913 36 1 3.3580 1.8929 2.1715 37 1 5.8049 4.2181 0.4920 38 1 7.2728 5.2794 0.7564 39 1 9.1495 6.7954 1.2214 40 1 8.8863 8.6430 2.8147 41 1 4.5002 7.9592 6.2016 42 1 4.8001 7.4624 3.4935 43 1 4.4713 3.6894 -3.1225 44 1 3.7150 2.0849 -3.2707 45 1 2.7999 3.5443 -3.7181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275074467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:46 Heat of formation + Delta-G solvation = -85.348179 kcal Electronic energy + Delta-G solvation = -26466.753356 eV Core-core repulsion = 22642.988088 eV Total energy + Delta-G solvation = -3823.765268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.34681 -38.76998 -37.27764 -36.95496 -35.65894 -33.76924 -32.74541 -30.93368 -29.92255 -29.41173 -27.17120 -25.44046 -24.65043 -24.57802 -23.02995 -22.13209 -20.95350 -20.08722 -19.48891 -17.77447 -17.42943 -16.75521 -16.02671 -15.83789 -15.74883 -15.23612 -15.11738 -14.81761 -14.45122 -14.12831 -13.85369 -13.68279 -13.20107 -13.11200 -12.94792 -12.81926 -12.60446 -12.47235 -12.16231 -11.78678 -11.63414 -11.59574 -11.51064 -11.21885 -11.14114 -11.05147 -10.76360 -10.67769 -10.48502 -9.99759 -9.86019 -9.67766 -9.43605 -9.20896 -8.95582 -8.62280 -7.62312 -7.51499 -6.79019 -4.40463 2.22217 2.82331 3.09142 3.12701 3.16747 3.25506 3.56531 3.85715 3.93166 3.99755 4.35251 4.38692 4.63137 4.79221 4.82700 4.88892 4.90426 5.08302 5.15143 5.18677 5.24433 5.35967 5.52216 5.52556 5.62005 5.70034 5.70931 5.85677 5.92132 5.94931 6.06175 6.22364 6.27506 6.72716 6.86744 6.96251 7.00077 7.02979 7.22124 7.25327 7.38998 7.70826 7.76754 7.93607 8.10779 8.20395 8.51742 8.81303 8.84507 8.98381 10.15727 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002866 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.335478 B = 9768.493651 C =10715.465187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.348 6.348 4 C 0.055 3.945 5 H 0.078 0.922 6 C -0.172 4.172 7 C 0.140 3.860 8 H 0.125 0.875 9 N -0.728 5.728 10 C 0.566 3.434 11 O -0.541 6.541 12 C -0.127 4.127 13 C -0.219 4.219 14 C -0.098 4.098 15 C -0.213 4.213 16 C 0.098 3.902 17 C -0.459 4.459 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.092 4.092 26 C 0.057 3.943 27 H 0.099 0.901 28 O -0.356 6.356 29 C 0.028 3.972 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -14.972 -11.935 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.266 6.266 4 C -0.005 4.005 5 H 0.096 0.904 6 C -0.212 4.212 7 C 0.034 3.966 8 H 0.143 0.857 9 N -0.381 5.381 10 C 0.356 3.644 11 O -0.419 6.419 12 C -0.131 4.131 13 C -0.239 4.239 14 C -0.116 4.116 15 C -0.233 4.233 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.406 5.406 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.112 4.112 26 C -0.003 4.003 27 H 0.116 0.884 28 O -0.274 6.274 29 C -0.069 4.069 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.233 0.767 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.115 -14.711 -11.305 19.004 hybrid contribution 0.709 0.073 0.089 0.719 sum -3.405 -14.638 -11.216 18.753 Atomic orbital electron populations 1.21730 0.93669 1.02011 1.03434 1.22533 0.95756 0.84064 0.99726 1.88012 1.18529 1.25703 1.94371 1.23470 0.82863 0.97496 0.96625 0.90425 1.23847 1.02114 0.96926 0.98285 1.22620 0.93460 0.88695 0.91833 0.85729 1.45928 1.14649 1.31190 1.46313 1.18875 0.88335 0.79628 0.77514 1.90703 1.28101 1.72664 1.50391 1.19476 0.92825 0.98500 1.02256 1.20310 0.94245 1.03117 1.06222 1.20426 0.96708 0.96036 0.98440 1.21089 0.97047 1.00920 1.04204 1.17611 0.89976 0.91916 0.90910 1.19606 1.15621 1.03220 1.10387 0.90048 1.25976 0.94746 0.97236 0.96686 1.69792 1.21127 1.25038 1.24677 0.86255 0.79940 0.81834 0.78474 1.19177 1.20194 1.18544 1.21654 0.99931 0.94014 0.95590 1.24622 0.93614 0.93150 0.88910 0.88371 1.88082 1.42612 1.82116 1.14549 1.22814 0.99904 0.99907 0.84243 0.91656 0.91764 0.91281 0.93651 0.93450 0.88708 0.89378 0.76740 0.89365 0.88951 0.88637 0.90424 0.84821 0.93981 0.94411 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.52 6.50 37.16 0.24 0.76 16 3 O -0.35 -4.45 9.89 -50.30 -0.50 -4.95 16 4 C 0.06 0.62 4.33 -25.82 -0.11 0.50 16 5 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 6 C -0.17 -2.16 7.72 -25.82 -0.20 -2.36 16 7 C 0.14 2.15 3.97 -67.12 -0.27 1.88 16 8 H 0.12 2.34 7.50 -51.93 -0.39 1.95 16 9 N -0.73 -12.34 5.31 -53.95 -0.29 -12.63 16 10 C 0.57 12.67 7.77 -12.31 -0.10 12.58 16 11 O -0.54 -14.03 15.95 5.32 0.08 -13.94 16 12 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 13 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 14 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 15 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 16 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 17 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 18 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.78 -20.91 10.96 55.55 0.61 -20.30 16 21 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 25 C -0.09 -2.48 8.24 -38.44 -0.32 -2.79 16 26 C 0.06 0.68 4.00 -25.92 -0.10 0.58 16 27 H 0.10 0.93 7.84 -51.93 -0.41 0.52 16 28 O -0.36 -4.86 10.33 -50.30 -0.52 -5.38 16 29 C 0.03 0.27 10.85 101.05 1.10 1.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 5.65 6.73 -40.82 -0.27 5.37 16 38 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 42 H 0.13 3.91 5.75 -52.48 -0.30 3.61 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -31.79 377.79 -8.85 -40.64 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.74 Total: 10.53 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.17 Total: -13.60 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.32 Total: -32.93 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.93 Total: -24.27 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.79 -8.85 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275074467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.704 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds