Wall clock time and date at job start Tue Mar 31 2020 13:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47727 * 2 1 4 4 C 1.42893 * 114.00242 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.85181 * 18.80651 * 4 3 2 6 6 C 1.53961 * 113.53791 * 247.49347 * 4 3 2 7 7 C 1.53781 * 87.01910 * 270.81133 * 6 4 3 8 8 H 1.09005 * 113.61155 * 89.23119 * 7 6 4 9 9 N 1.46496 * 113.61295 * 220.04392 * 7 6 4 10 10 C 1.34777 * 120.00249 * 254.41509 * 9 7 6 11 11 O 1.21548 * 119.99957 * 359.72545 * 10 9 7 12 12 C 1.47889 * 119.99738 * 179.72739 * 10 9 7 13 13 C 1.39914 * 120.02940 * 0.02562 * 12 10 9 14 14 C 1.38327 * 120.36066 * 179.97438 * 13 12 10 15 15 C 1.37759 * 120.41123 * 359.97438 * 14 13 12 16 16 C 1.40746 * 120.03748 * 0.02562 * 15 14 13 17 17 C 1.41436 * 120.17477 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00431 * 24.35940 * 17 16 15 19 19 C 1.39944 * 119.99993 * 204.36214 * 17 16 15 20 20 N 1.30827 * 119.99726 * 17.73873 * 19 17 16 21 21 Si 1.86801 * 119.99996 * 197.74339 * 19 17 16 22 22 H 1.48494 * 109.47182 * 94.68688 * 21 19 17 23 23 H 1.48507 * 109.46915 * 214.68793 * 21 19 17 24 24 H 1.48500 * 109.47163 * 334.68465 * 21 19 17 25 25 C 1.38996 * 120.02043 * 179.72324 * 12 10 9 26 26 C 1.53778 * 87.17489 * 334.63741 * 7 6 4 27 27 H 1.08992 * 113.61585 * 270.83806 * 26 7 6 28 28 O 1.42899 * 113.61126 * 139.93894 * 26 7 6 29 29 C 1.42903 * 114.00295 * 150.00464 * 28 26 7 30 30 H 1.08999 * 109.46989 * 300.00083 * 1 2 3 31 31 H 1.08999 * 109.47099 * 59.99863 * 1 2 3 32 32 H 1.09003 * 109.47755 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46989 * 239.99917 * 2 1 3 34 34 H 1.08999 * 109.46967 * 120.00676 * 2 1 3 35 35 H 1.09003 * 113.60996 * 156.29507 * 6 4 3 36 36 H 1.08996 * 113.66288 * 25.34531 * 6 4 3 37 37 H 0.96999 * 119.99955 * 74.14746 * 9 7 6 38 38 H 1.08002 * 119.82097 * 359.97438 * 13 12 10 39 39 H 1.07997 * 119.79579 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.97990 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99766 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.20525 * 0.02562 * 25 12 10 43 43 H 1.09005 * 109.46406 * 299.99692 * 29 28 26 44 44 H 1.08999 * 109.47511 * 59.98981 * 29 28 26 45 45 H 1.08997 * 109.47594 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.9280 0.5455 -0.3229 6 6 4.0006 2.0472 1.3047 7 6 3.8392 3.4326 0.6570 8 1 2.8647 3.8871 0.8354 9 7 4.9517 4.3440 0.9359 10 6 4.7914 5.3543 1.8135 11 8 3.7222 5.5122 2.3697 12 6 5.9163 6.2707 2.0996 13 6 7.1470 6.0898 1.4592 14 6 8.2037 6.9432 1.7212 15 6 8.0566 7.9811 2.6150 16 6 6.8260 8.1788 3.2689 17 6 6.6717 9.2438 4.1866 18 1 7.3049 10.1156 4.1137 19 6 5.6984 9.1680 5.1893 20 7 5.1752 8.0117 5.5069 21 14 5.1461 10.7177 6.0741 22 1 3.9284 11.2559 5.4164 23 1 4.8422 10.3966 7.4918 24 1 6.2288 11.7325 6.0175 25 6 5.7498 7.3162 3.0002 26 6 3.9491 2.7249 -0.7039 27 1 4.9725 2.6341 -1.0675 28 8 3.0520 3.2389 -1.6903 29 6 3.5384 3.1332 -3.0299 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.0384 1.7707 1.4913 36 1 3.3580 1.8929 2.1715 37 1 5.8049 4.2181 0.4920 38 1 7.2728 5.2794 0.7564 39 1 9.1495 6.7954 1.2214 40 1 8.8863 8.6430 2.8147 41 1 4.5002 7.9592 6.2016 42 1 4.8001 7.4624 3.4935 43 1 4.4713 3.6894 -3.1225 44 1 3.7150 2.0849 -3.2707 45 1 2.7999 3.5443 -3.7181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275074467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:45 Heat of formation + Delta-G solvation = -106.448452 kcal Electronic energy + Delta-G solvation = -26467.668332 eV Core-core repulsion = 22642.988088 eV Total energy + Delta-G solvation = -3824.680244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52392 -40.31526 -38.76209 -38.12304 -36.81462 -35.63043 -34.19196 -32.01356 -31.46245 -31.23833 -27.94641 -27.29186 -25.98535 -25.54082 -23.75037 -23.69304 -22.78507 -21.40020 -20.94129 -19.51808 -18.44931 -18.12382 -17.40242 -17.02464 -16.74109 -16.65494 -16.45267 -16.10028 -15.83819 -15.73053 -15.25094 -15.06996 -14.55859 -14.43864 -14.27450 -14.02615 -13.90201 -13.58847 -13.43677 -13.09012 -12.98288 -12.82835 -12.62035 -12.52208 -12.48140 -12.28102 -12.18117 -12.02465 -11.89618 -11.60739 -11.49618 -11.09250 -10.92732 -10.59747 -10.35903 -10.02886 -9.47418 -9.38624 -8.67168 -6.38616 0.37374 1.00522 1.35321 1.47271 1.50296 2.07859 2.15807 2.18467 2.52774 2.77681 3.05509 3.36223 3.47540 3.68578 3.77510 3.96470 4.00670 4.15707 4.20575 4.34353 4.37452 4.43284 4.51296 4.54663 4.59509 4.59561 4.78361 4.83778 4.89121 4.91315 4.92507 5.03427 5.04294 5.08788 5.19620 5.27237 5.31070 5.47020 5.52471 5.86713 5.92213 6.05415 6.16773 6.28602 6.45073 6.51030 6.68955 6.87428 6.94730 7.31504 8.29618 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002866 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.335478 B = 9768.493651 C =10715.465187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.382 6.382 4 C 0.064 3.936 5 H 0.119 0.881 6 C -0.166 4.166 7 C 0.117 3.883 8 H 0.077 0.923 9 N -0.700 5.700 10 C 0.560 3.440 11 O -0.592 6.592 12 C -0.138 4.138 13 C -0.195 4.195 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.825 5.825 21 Si 0.983 3.017 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.249 1.249 25 C -0.133 4.133 26 C 0.068 3.932 27 H 0.137 0.863 28 O -0.391 6.391 29 C 0.022 3.978 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.415 0.585 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 -17.189 -14.474 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.301 6.301 4 C 0.005 3.995 5 H 0.137 0.863 6 C -0.205 4.205 7 C 0.012 3.988 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.350 3.650 11 O -0.473 6.473 12 C -0.142 4.142 13 C -0.214 4.214 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.194 1.194 23 H -0.193 1.193 24 H -0.172 1.172 25 C -0.154 4.154 26 C 0.009 3.991 27 H 0.154 0.846 28 O -0.309 6.309 29 C -0.074 4.074 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.086 0.914 37 H 0.253 0.747 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.715 -16.972 -13.900 22.004 hybrid contribution 0.020 0.617 0.683 0.920 sum -1.695 -16.355 -13.217 21.096 Atomic orbital electron populations 1.21767 0.93575 1.03284 1.02246 1.22755 0.95993 0.82822 1.01117 1.87996 1.19705 1.27986 1.94410 1.23484 0.82484 0.98626 0.94931 0.86320 1.23864 1.03406 0.94770 0.98491 1.22840 0.90779 0.89159 0.96053 0.90449 1.45669 1.15922 1.29483 1.44205 1.18853 0.87307 0.80605 0.78197 1.90678 1.29832 1.74156 1.52648 1.19773 0.94714 0.97885 1.01790 1.20857 0.92291 1.03434 1.04865 1.20944 0.98686 0.94403 0.97237 1.21419 0.96248 1.01893 1.04039 1.17960 0.91152 0.92533 0.92008 1.19878 1.17298 1.03890 1.11562 0.89719 1.26878 0.94350 1.00246 0.97233 1.69899 1.22164 1.27302 1.25738 0.85179 0.79404 0.77774 0.77301 1.19360 1.19317 1.17179 1.21450 0.98988 0.96781 0.98156 1.24663 0.95369 0.92059 0.87013 0.84593 1.88049 1.43928 1.82550 1.16417 1.23021 1.00429 1.01611 0.82351 0.93262 0.92537 0.88766 0.91552 0.92536 0.86130 0.91420 0.74653 0.84225 0.84060 0.87269 0.90384 0.88645 0.92926 0.92202 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.82 6.50 71.98 0.47 1.28 16 3 O -0.38 -9.37 9.89 -134.58 -1.33 -10.70 16 4 C 0.06 1.25 4.33 31.18 0.13 1.38 16 5 H 0.12 1.39 7.87 -2.39 -0.02 1.37 16 6 C -0.17 -3.92 7.72 31.18 0.24 -3.68 16 7 C 0.12 3.55 3.97 45.52 0.18 3.73 16 8 H 0.08 3.12 7.50 -2.38 -0.02 3.10 16 9 N -0.70 -22.87 5.31 -442.87 -2.35 -25.22 16 10 C 0.56 25.75 7.77 86.80 0.67 26.42 16 11 O -0.59 -32.90 15.95 -3.87 -0.06 -32.96 16 12 C -0.14 -6.67 5.87 -20.13 -0.12 -6.79 16 13 C -0.19 -7.54 9.55 22.70 0.22 -7.32 16 14 C -0.09 -3.69 10.01 22.18 0.22 -3.47 16 15 C -0.22 -10.11 9.78 22.77 0.22 -9.88 16 16 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 17 C -0.50 -27.52 9.05 23.47 0.21 -27.31 16 18 H 0.08 4.41 7.91 -2.91 -0.02 4.39 16 19 C 0.03 1.48 5.14 85.26 0.44 1.92 16 20 N -0.83 -47.25 10.96 21.83 0.24 -47.01 16 21 Si 0.98 40.64 29.59 68.60 2.03 42.67 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.13 -7.59 8.24 23.01 0.19 -7.40 16 26 C 0.07 1.45 4.00 31.12 0.12 1.58 16 27 H 0.14 1.84 7.84 -2.39 -0.02 1.82 16 28 O -0.39 -10.01 10.33 -134.58 -1.39 -11.40 16 29 C 0.02 0.35 10.85 113.37 1.23 1.58 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.41 10.20 6.73 -92.71 -0.62 9.57 16 38 H 0.14 3.92 6.38 -2.91 -0.02 3.90 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.29 15.11 8.30 -92.71 -0.77 14.34 16 42 H 0.10 6.11 5.75 -2.91 -0.02 6.09 16 43 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.86 377.79 2.57 -75.29 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.37 Total: 35.43 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 5.06 Total: -26.09 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -2.11 Total: -72.24 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -2.78 Total: -55.06 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -77.86 2.57 -75.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275074467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.156 kcal (2) G-P(sol) polarization free energy of solvation -77.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds