Wall clock time and date at job start Tue Mar 31 2020 12:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46966 * 2 1 4 4 C 1.37092 * 120.00134 * 264.77033 * 3 2 1 5 5 H 1.08006 * 119.99761 * 146.16283 * 4 3 2 6 6 C 1.38941 * 120.00392 * 326.16751 * 4 3 2 7 7 N 1.31415 * 120.00011 * 337.71560 * 6 4 3 8 8 Si 1.86805 * 120.00370 * 157.71801 * 6 4 3 9 9 H 1.48506 * 109.46922 * 60.00009 * 8 6 4 10 10 H 1.48497 * 109.47034 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46718 * 299.99801 * 8 6 4 12 12 C 1.34787 * 119.99657 * 84.77487 * 3 2 1 13 13 O 1.21290 * 119.99876 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00121 * 359.97438 * 12 3 2 15 15 H 1.09005 * 115.55108 * 325.72284 * 14 12 3 16 16 C 1.53004 * 117.49775 * 111.39005 * 14 12 3 17 17 C 1.53004 * 60.03005 * 107.47711 * 16 14 12 18 18 H 1.09000 * 117.49930 * 252.52262 * 17 16 14 19 19 C 1.50701 * 117.49674 * 107.49691 * 17 16 14 20 20 C 1.38155 * 119.99962 * 351.12391 * 19 17 16 21 21 C 1.38683 * 119.99577 * 179.81343 * 20 19 17 22 22 O 1.35977 * 119.99699 * 180.22411 * 21 20 19 23 23 C 1.42905 * 117.00128 * 180.20678 * 22 21 20 24 24 C 1.38716 * 120.00053 * 0.43113 * 21 20 19 25 25 C 1.38107 * 119.99867 * 359.79731 * 24 21 20 26 26 C 1.38672 * 119.99738 * 171.38988 * 19 17 16 27 27 O 1.35977 * 120.00240 * 359.95815 * 26 19 17 28 28 C 1.42900 * 117.00216 * 179.97438 * 27 26 19 29 29 H 1.08998 * 109.46737 * 59.99809 * 1 2 3 30 30 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47136 * 299.99979 * 1 2 3 32 32 H 1.09000 * 109.47136 * 240.00021 * 2 1 3 33 33 H 1.08998 * 109.46737 * 120.00191 * 2 1 3 34 34 H 0.96997 * 120.00065 * 179.97438 * 7 6 4 35 35 H 1.08999 * 117.49539 * 214.98159 * 16 14 12 36 36 H 1.08996 * 117.49780 * 359.97414 * 16 14 12 37 37 H 1.08000 * 120.00291 * 0.02562 * 20 19 17 38 38 H 1.09003 * 109.46567 * 59.99915 * 23 22 21 39 39 H 1.08993 * 109.47386 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46544 * 300.00106 * 23 22 21 41 41 H 1.07994 * 119.99931 * 179.81164 * 24 21 20 42 42 H 1.08002 * 119.99756 * 179.97438 * 25 24 21 43 43 H 1.09002 * 109.47191 * 59.99968 * 28 27 26 44 44 H 1.09005 * 109.47271 * 180.02562 * 28 27 26 45 45 H 1.08998 * 109.47447 * 300.00183 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.1809 3.0509 -1.3086 6 6 2.8998 1.2471 -2.2181 7 7 3.5039 0.1089 -1.9602 8 14 2.7819 1.8642 -3.9773 9 1 3.4559 3.1831 -4.0854 10 1 3.4433 0.8949 -4.8873 11 1 1.3534 2.0056 -4.3575 12 6 2.1427 2.0520 1.1625 13 8 2.5474 3.1954 1.1626 14 6 1.7790 1.3813 2.4621 15 1 0.9457 0.6804 2.4123 16 6 2.9165 1.0587 3.4331 17 6 1.9425 2.1960 3.7477 18 1 2.3131 3.2167 3.6529 19 6 0.9389 1.9681 4.8485 20 6 0.7979 0.7117 5.4056 21 6 -0.1229 0.5030 6.4213 22 8 -0.2585 -0.7325 6.9727 23 6 -1.2293 -0.8765 8.0114 24 6 -0.9088 1.5536 6.8718 25 6 -0.7711 2.8085 6.3116 26 6 0.1530 3.0183 5.2985 27 8 0.2885 4.2538 4.7471 28 6 -0.5537 5.2886 5.2588 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8882 -0.4110 -2.6834 35 1 2.8313 0.1457 4.0224 36 1 3.9279 1.3311 3.1318 37 1 1.4073 -0.1070 5.0524 38 1 -2.2154 -0.6183 7.6253 39 1 -1.2357 -1.9084 8.3623 40 1 -0.9776 -0.2126 8.8385 41 1 -1.6280 1.3903 7.6606 42 1 -1.3833 3.6263 6.6620 43 1 -0.3613 5.4205 6.3236 44 1 -0.3446 6.2205 4.7333 45 1 -1.5980 5.0143 5.1096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276336497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:31 Heat of formation + Delta-G solvation = -46.807101 kcal Electronic energy + Delta-G solvation = -27096.108584 eV Core-core repulsion = 23274.014583 eV Total energy + Delta-G solvation = -3822.094001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62173 -39.06188 -38.77179 -36.91895 -35.52904 -34.61605 -31.92961 -30.81875 -29.79621 -29.36801 -27.46974 -26.92629 -25.58763 -23.79054 -23.04835 -21.96997 -21.71434 -20.32335 -18.48906 -18.17811 -17.53565 -16.87873 -16.65360 -15.96435 -15.89047 -15.54583 -14.92261 -14.79482 -14.47208 -14.39340 -14.23096 -13.60294 -13.43055 -12.98668 -12.86956 -12.81207 -12.78079 -12.27751 -11.88620 -11.83128 -11.70540 -11.64419 -11.53095 -11.15576 -11.02375 -10.87324 -10.74716 -10.58702 -10.34629 -10.28753 -10.18728 -9.99508 -9.82202 -8.89541 -8.70672 -8.28146 -7.65474 -7.40655 -6.26566 -3.86611 1.18825 1.46244 3.16675 3.22719 3.29026 3.33074 3.40659 3.55323 3.84885 4.19426 4.51098 4.60893 4.67141 4.85009 4.93139 4.94722 5.01181 5.08501 5.12294 5.15473 5.24761 5.32479 5.40370 5.44732 5.47825 5.55659 5.65295 5.80668 5.89149 6.05042 6.06286 6.12768 6.25692 6.29893 6.36038 6.44355 6.52462 6.55131 6.65914 6.81477 6.97624 7.25076 7.36319 7.50867 7.65975 8.32504 8.60282 9.27011 9.50881 10.12853 10.77063 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003371 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.646789 B = 8303.129505 C = 9213.215250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.437 5.437 4 C -0.306 4.306 5 H 0.091 0.909 6 C 0.035 3.965 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.486 3.514 13 O -0.580 6.580 14 C -0.152 4.152 15 H 0.112 0.888 16 C -0.150 4.150 17 C -0.089 4.089 18 H 0.129 0.871 19 C -0.031 4.031 20 C -0.115 4.115 21 C 0.092 3.908 22 O -0.318 6.318 23 C 0.029 3.971 24 C -0.178 4.178 25 C -0.170 4.170 26 C 0.102 3.898 27 O -0.303 6.303 28 C 0.028 3.972 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 -1.180 18.280 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.155 5.155 4 C -0.434 4.434 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.507 5.507 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.274 3.726 13 O -0.464 6.464 14 C -0.174 4.174 15 H 0.130 0.870 16 C -0.188 4.188 17 C -0.108 4.108 18 H 0.147 0.853 19 C -0.031 4.031 20 C -0.133 4.133 21 C 0.047 3.953 22 O -0.232 6.232 23 C -0.066 4.066 24 C -0.197 4.197 25 C -0.189 4.189 26 C 0.057 3.943 27 O -0.216 6.216 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.912 -0.878 17.929 20.506 hybrid contribution -0.646 0.247 -0.453 0.826 sum -10.558 -0.632 17.477 20.428 Atomic orbital electron populations 1.22233 0.98420 1.00230 1.01471 1.21578 0.91540 0.85501 1.04117 1.43412 1.55610 1.11838 1.04621 1.19430 1.39666 0.95467 0.88834 0.89107 1.25311 0.94587 0.96544 1.00424 1.69924 1.32675 1.15267 1.32873 0.86153 0.78594 0.78733 0.82170 1.19775 1.21015 1.19955 1.19371 0.82119 0.87360 0.83771 1.90507 1.50617 1.18671 1.86621 1.22472 1.01677 1.02683 0.90554 0.86969 1.23044 0.95659 0.98774 1.01289 1.20850 0.98306 0.98764 0.92868 0.85268 1.18386 0.96936 0.90483 0.97338 1.20169 0.99551 0.96990 0.96607 1.18789 0.96975 0.84180 0.95316 1.86080 1.57916 1.27791 1.51390 1.22996 0.91257 1.03106 0.89239 1.20913 1.02509 0.92858 1.03405 1.20943 1.00993 0.98018 0.98956 1.18687 0.96048 0.85491 0.94108 1.86228 1.59828 1.15923 1.59656 1.23027 0.94160 0.90203 0.99342 0.92524 0.93178 0.93904 0.86952 0.93251 0.92253 0.88325 0.87953 0.84173 0.92895 0.88447 0.92939 0.85520 0.85292 0.93079 0.88248 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.02 37.16 0.37 -2.78 16 2 C 0.10 2.19 5.31 -4.04 -0.02 2.17 16 3 N -0.44 -11.47 2.56 -114.81 -0.29 -11.76 16 4 C -0.31 -8.73 8.98 -14.94 -0.13 -8.86 16 5 H 0.09 2.71 7.70 -52.48 -0.40 2.31 16 6 C 0.03 0.94 4.92 -17.47 -0.09 0.86 16 7 N -0.87 -23.72 11.33 55.50 0.63 -23.09 16 8 Si 0.92 20.95 29.61 -169.99 -5.03 15.91 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 C 0.49 12.47 7.38 -10.98 -0.08 12.39 16 13 O -0.58 -16.92 16.08 5.55 0.09 -16.83 16 14 C -0.15 -3.07 4.41 -91.73 -0.40 -3.47 16 15 H 0.11 2.09 6.01 -51.93 -0.31 1.78 16 16 C -0.15 -2.60 9.56 -26.73 -0.26 -2.85 16 17 C -0.09 -1.63 5.26 -91.73 -0.48 -2.11 16 18 H 0.13 2.65 7.29 -51.93 -0.38 2.28 16 19 C -0.03 -0.49 5.62 -104.49 -0.59 -1.07 16 20 C -0.11 -1.64 9.23 -39.45 -0.36 -2.00 16 21 C 0.09 1.19 6.69 -39.24 -0.26 0.93 16 22 O -0.32 -3.78 10.50 -19.67 -0.21 -3.98 16 23 C 0.03 0.22 9.81 101.05 0.99 1.21 16 24 C -0.18 -2.03 9.03 -39.45 -0.36 -2.39 16 25 C -0.17 -2.05 9.03 -39.45 -0.36 -2.41 16 26 C 0.10 1.52 6.66 -39.24 -0.26 1.26 16 27 O -0.30 -4.67 9.67 -19.67 -0.19 -4.86 16 28 C 0.03 0.29 9.81 101.05 0.99 1.28 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.78 6.86 -51.93 -0.36 0.43 16 32 H 0.11 2.77 5.34 -51.93 -0.28 2.50 16 33 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 35 H 0.10 1.41 6.18 -51.93 -0.32 1.09 16 36 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.14 1.88 6.03 -52.49 -0.32 1.56 16 38 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 41 H 0.13 1.08 6.29 -52.49 -0.33 0.75 16 42 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 43 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -33.65 367.38 -6.99 -40.64 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.23 Total: 6.29 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.30 Total: -7.86 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.34 Total: -34.85 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.31 Total: -25.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.65 -6.99 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276336497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.165 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds