Wall clock time and date at job start Tue Mar 31 2020 12:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 O 1.20764 * 120.00446 * 2 1 4 4 C 1.50706 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47122 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46912 * 60.00175 * 5 4 2 7 7 C 1.52991 * 109.47200 * 300.00016 * 5 4 2 8 8 C 1.52996 * 109.46861 * 180.02562 * 5 4 2 9 9 C 1.50700 * 109.47196 * 180.02562 * 8 5 4 10 10 O 1.21287 * 119.99841 * 0.02562 * 9 8 5 11 11 N 1.34775 * 119.99999 * 179.97438 * 9 8 5 12 12 C 1.39919 * 119.99780 * 175.48810 * 11 9 8 13 13 C 1.38969 * 120.03650 * 214.84873 * 12 11 9 14 14 C 1.38158 * 120.06368 * 179.72056 * 13 12 11 15 15 C 1.38167 * 120.13972 * 0.56070 * 14 13 12 16 16 C 1.38905 * 120.07508 * 359.71704 * 15 14 13 17 17 O 1.35747 * 120.03882 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99920 * 5.36534 * 17 16 15 19 19 H 1.08010 * 119.99664 * 354.96828 * 18 17 16 20 20 C 1.38652 * 120.00394 * 174.96131 * 18 17 16 21 21 N 1.31565 * 119.99610 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00394 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46998 * 90.00184 * 22 20 18 24 24 H 1.48494 * 109.47114 * 210.00336 * 22 20 18 25 25 H 1.48502 * 109.46993 * 330.00200 * 22 20 18 26 26 C 1.38712 * 120.03870 * 35.12981 * 12 11 9 27 27 H 1.09000 * 109.47192 * 240.00063 * 1 2 3 28 28 H 1.09000 * 109.47313 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47609 * 119.99860 * 1 2 3 30 30 H 1.09004 * 109.46800 * 59.99634 * 4 2 1 31 31 H 1.08997 * 109.46926 * 299.99995 * 4 2 1 32 32 H 1.08996 * 109.46729 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47479 * 299.99834 * 6 5 4 34 34 H 1.08997 * 109.47130 * 59.99590 * 6 5 4 35 35 H 1.08996 * 109.47425 * 300.00004 * 7 5 4 36 36 H 1.09004 * 109.47438 * 60.00340 * 7 5 4 37 37 H 1.09005 * 109.46964 * 180.02562 * 7 5 4 38 38 H 1.09010 * 109.47369 * 300.00333 * 8 5 4 39 39 H 1.09007 * 109.47429 * 60.00125 * 8 5 4 40 40 H 0.96997 * 120.00090 * 355.49854 * 11 9 8 41 41 H 1.07996 * 119.96735 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.92824 * 180.25956 * 14 13 12 43 43 H 1.08009 * 119.96432 * 179.74527 * 15 14 13 44 44 H 0.96999 * 119.99613 * 179.97438 * 21 20 18 45 45 H 1.08009 * 120.06693 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.1348 -0.2235 1.2482 7 6 4.1338 -0.2230 -1.2502 8 6 4.5297 -2.3505 -0.0023 9 6 6.0113 -2.0752 -0.0022 10 8 6.4156 -0.9317 -0.0008 11 7 6.8871 -3.0996 -0.0027 12 6 8.2599 -2.8463 -0.0979 13 6 9.0828 -3.7249 -0.7922 14 6 10.4375 -3.4724 -0.8914 15 6 10.9802 -2.3523 -0.2914 16 6 10.1639 -1.4732 0.4088 17 8 10.6979 -0.3733 0.9985 18 6 12.0054 -0.1324 0.7741 19 1 12.5976 -0.8434 0.2169 20 6 12.5898 1.0279 1.2586 21 7 11.8684 1.8936 1.9376 22 14 14.4011 1.3619 0.9472 23 1 14.5544 2.1118 -0.3254 24 1 14.9555 2.1662 2.0656 25 1 15.1331 0.0733 0.8537 26 6 8.8018 -1.7210 0.5055 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.9971 -1.8763 -0.8908 31 1 1.9971 -1.8771 0.8891 32 1 5.2064 -0.0247 1.2480 33 1 3.5898 0.7204 1.2487 34 1 3.8717 -0.7953 2.1381 35 1 3.8702 -0.7943 -2.1402 36 1 3.5889 0.7211 -1.2498 37 1 5.2056 -0.0242 -1.2508 38 1 4.2667 -2.9228 0.8874 39 1 4.2660 -2.9216 -0.8926 40 1 6.5657 -4.0124 0.0628 41 1 8.6624 -4.6039 -1.2580 42 1 11.0744 -4.1545 -1.4351 43 1 12.0402 -2.1598 -0.3674 44 1 12.2773 2.7052 2.2768 45 1 8.1650 -1.0388 1.0492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276450428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:48 Heat of formation + Delta-G solvation = -72.074509 kcal Electronic energy + Delta-G solvation = -26603.841061 eV Core-core repulsion = 22780.651382 eV Total energy + Delta-G solvation = -3823.189678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72892 -39.79227 -38.64450 -36.84755 -35.67712 -34.03249 -32.20610 -31.25363 -29.87985 -28.97528 -27.65007 -27.20894 -27.06338 -25.23906 -22.55997 -21.52378 -20.71556 -19.84345 -18.91592 -18.08842 -17.31362 -16.69875 -16.22670 -15.66744 -15.50821 -15.35547 -15.05926 -15.01134 -14.34756 -14.25637 -14.11864 -13.78979 -13.50492 -13.47274 -12.95626 -12.75375 -12.63845 -12.45523 -12.34979 -12.15421 -11.79177 -11.60460 -11.27535 -11.21148 -11.18411 -11.15207 -10.92919 -10.89916 -10.70009 -10.65962 -10.42751 -9.67678 -9.60300 -9.37939 -8.96032 -8.77238 -7.65307 -7.14536 -6.38040 -3.97309 1.77911 2.05425 2.37748 2.91302 3.16592 3.17953 3.22384 3.26927 3.85778 4.02399 4.49119 4.62240 4.70378 4.74006 4.80669 4.98640 5.01575 5.16125 5.23036 5.25256 5.32985 5.34579 5.44916 5.50642 5.65473 5.69971 5.70302 5.85827 6.10995 6.12505 6.14941 6.16115 6.26106 6.40032 6.42406 6.65250 6.71107 6.82259 6.95776 7.07695 7.12431 7.38256 7.42488 7.52070 7.75687 7.84831 8.06717 8.46195 9.06733 9.78332 10.79856 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002839 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.563728 B = 9860.794923 C =11207.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.348 3.652 3 O -0.438 6.438 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.167 4.167 7 C -0.166 4.166 8 C -0.131 4.131 9 C 0.504 3.496 10 O -0.496 6.496 11 N -0.673 5.673 12 C 0.175 3.825 13 C -0.237 4.237 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.166 3.834 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.187 4.187 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.404 0.596 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.334 -12.028 -4.430 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.223 3.777 3 O -0.312 6.312 4 C -0.201 4.201 5 C -0.035 4.035 6 C -0.223 4.223 7 C -0.223 4.223 8 C -0.171 4.171 9 C 0.292 3.708 10 O -0.370 6.370 11 N -0.318 5.318 12 C 0.082 3.918 13 C -0.258 4.258 14 C -0.078 4.078 15 C -0.266 4.266 16 C 0.111 3.889 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.208 4.208 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.238 0.762 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.835 -10.204 -4.161 22.691 hybrid contribution 0.642 -0.685 -0.214 0.963 sum -19.193 -10.890 -4.375 22.497 Atomic orbital electron populations 1.22335 0.94825 1.04830 1.04251 1.24517 0.91599 0.90564 0.70971 1.90372 1.71202 1.35313 1.34265 1.22224 0.96130 0.97508 1.04262 1.20079 0.91270 0.93672 0.98452 1.22320 1.05302 1.00457 0.94262 1.22316 1.05241 1.00443 0.94277 1.21778 0.91688 0.99573 1.04056 1.20714 0.88483 0.85264 0.76357 1.90695 1.79472 1.20769 1.46018 1.43471 1.04978 1.09825 1.73484 1.17197 0.81551 0.95978 0.97095 1.20268 0.94184 1.02695 1.08696 1.20496 0.93948 0.96053 0.97331 1.21175 1.00817 0.97813 1.06826 1.19157 0.91678 0.87687 0.90342 1.83992 1.26557 1.36592 1.60500 1.21339 0.82341 1.06254 1.36865 0.89030 1.25303 1.00330 0.94674 0.96271 1.70060 1.36304 1.09874 1.33248 0.85712 0.80507 0.78879 0.78306 1.19888 1.20292 1.19216 1.20174 0.92841 1.00622 1.07151 0.89206 0.90168 0.89225 0.88588 0.88542 0.89440 0.90873 0.94207 0.94311 0.90893 0.89502 0.88934 0.88944 0.76150 0.87506 0.87142 0.85523 0.92040 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.07 10.26 36.00 0.37 -0.70 16 2 C 0.35 3.04 6.68 -29.04 -0.19 2.85 16 3 O -0.44 -5.75 12.08 6.00 0.07 -5.67 16 4 C -0.16 -1.18 4.71 -27.88 -0.13 -1.31 16 5 C -0.03 -0.38 0.51 -154.51 -0.08 -0.46 16 6 C -0.17 -2.30 7.88 37.16 0.29 -2.01 16 7 C -0.17 -2.24 7.88 37.15 0.29 -1.95 16 8 C -0.13 -1.26 4.77 -27.89 -0.13 -1.39 16 9 C 0.50 7.39 7.09 -10.99 -0.08 7.31 16 10 O -0.50 -9.63 8.79 5.55 0.05 -9.58 16 11 N -0.67 -9.46 5.34 -9.88 -0.05 -9.51 16 12 C 0.17 3.27 6.30 -83.72 -0.53 2.74 16 13 C -0.24 -4.09 9.96 -39.34 -0.39 -4.48 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 15 C -0.25 -5.52 9.17 -39.36 -0.36 -5.88 16 16 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 17 O -0.17 -5.21 9.76 0.05 0.00 -5.20 16 18 C -0.39 -11.33 9.49 30.89 0.29 -11.03 16 19 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -26.18 13.67 55.48 0.76 -25.42 16 22 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 26 C -0.19 -4.33 8.64 -39.21 -0.34 -4.67 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.52 5.51 -51.93 -0.29 1.23 16 33 H 0.07 1.08 5.52 -51.93 -0.29 0.80 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.06 5.52 -51.93 -0.29 0.77 16 37 H 0.09 1.48 5.51 -51.93 -0.29 1.19 16 38 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 3.92 8.82 -40.82 -0.36 3.56 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.13 3.32 6.23 -52.48 -0.33 3.00 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -36.04 361.60 -6.67 -42.72 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.18 Total: 8.63 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.74 Total: -17.49 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.71 Total: -34.93 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.12 Total: -20.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.04 -6.67 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276450428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.359 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds