Wall clock time and date at job start Tue Mar 31 2020 12:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 O 1.20764 * 120.00446 * 2 1 4 4 C 1.50706 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47122 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46912 * 60.00175 * 5 4 2 7 7 C 1.52991 * 109.47200 * 300.00016 * 5 4 2 8 8 C 1.52996 * 109.46861 * 180.02562 * 5 4 2 9 9 C 1.50700 * 109.47196 * 180.02562 * 8 5 4 10 10 O 1.21287 * 119.99841 * 0.02562 * 9 8 5 11 11 N 1.34775 * 119.99999 * 179.97438 * 9 8 5 12 12 C 1.39919 * 119.99780 * 175.48810 * 11 9 8 13 13 C 1.38969 * 120.03650 * 214.84873 * 12 11 9 14 14 C 1.38158 * 120.06368 * 179.72056 * 13 12 11 15 15 C 1.38167 * 120.13972 * 0.56070 * 14 13 12 16 16 C 1.38905 * 120.07508 * 359.71704 * 15 14 13 17 17 O 1.35747 * 120.03882 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99920 * 5.36534 * 17 16 15 19 19 H 1.08010 * 119.99664 * 354.96828 * 18 17 16 20 20 C 1.38652 * 120.00394 * 174.96131 * 18 17 16 21 21 N 1.31565 * 119.99610 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00394 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46998 * 90.00184 * 22 20 18 24 24 H 1.48494 * 109.47114 * 210.00336 * 22 20 18 25 25 H 1.48502 * 109.46993 * 330.00200 * 22 20 18 26 26 C 1.38712 * 120.03870 * 35.12981 * 12 11 9 27 27 H 1.09000 * 109.47192 * 240.00063 * 1 2 3 28 28 H 1.09000 * 109.47313 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47609 * 119.99860 * 1 2 3 30 30 H 1.09004 * 109.46800 * 59.99634 * 4 2 1 31 31 H 1.08997 * 109.46926 * 299.99995 * 4 2 1 32 32 H 1.08996 * 109.46729 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47479 * 299.99834 * 6 5 4 34 34 H 1.08997 * 109.47130 * 59.99590 * 6 5 4 35 35 H 1.08996 * 109.47425 * 300.00004 * 7 5 4 36 36 H 1.09004 * 109.47438 * 60.00340 * 7 5 4 37 37 H 1.09005 * 109.46964 * 180.02562 * 7 5 4 38 38 H 1.09010 * 109.47369 * 300.00333 * 8 5 4 39 39 H 1.09007 * 109.47429 * 60.00125 * 8 5 4 40 40 H 0.96997 * 120.00090 * 355.49854 * 11 9 8 41 41 H 1.07996 * 119.96735 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.92824 * 180.25956 * 14 13 12 43 43 H 1.08009 * 119.96432 * 179.74527 * 15 14 13 44 44 H 0.96999 * 119.99613 * 179.97438 * 21 20 18 45 45 H 1.08009 * 120.06693 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.1348 -0.2235 1.2482 7 6 4.1338 -0.2230 -1.2502 8 6 4.5297 -2.3505 -0.0023 9 6 6.0113 -2.0752 -0.0022 10 8 6.4156 -0.9317 -0.0008 11 7 6.8871 -3.0996 -0.0027 12 6 8.2599 -2.8463 -0.0979 13 6 9.0828 -3.7249 -0.7922 14 6 10.4375 -3.4724 -0.8914 15 6 10.9802 -2.3523 -0.2914 16 6 10.1639 -1.4732 0.4088 17 8 10.6979 -0.3733 0.9985 18 6 12.0054 -0.1324 0.7741 19 1 12.5976 -0.8434 0.2169 20 6 12.5898 1.0279 1.2586 21 7 11.8684 1.8936 1.9376 22 14 14.4011 1.3619 0.9472 23 1 14.5544 2.1118 -0.3254 24 1 14.9555 2.1662 2.0656 25 1 15.1331 0.0733 0.8537 26 6 8.8018 -1.7210 0.5055 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.9971 -1.8763 -0.8908 31 1 1.9971 -1.8771 0.8891 32 1 5.2064 -0.0247 1.2480 33 1 3.5898 0.7204 1.2487 34 1 3.8717 -0.7953 2.1381 35 1 3.8702 -0.7943 -2.1402 36 1 3.5889 0.7211 -1.2498 37 1 5.2056 -0.0242 -1.2508 38 1 4.2667 -2.9228 0.8874 39 1 4.2660 -2.9216 -0.8926 40 1 6.5657 -4.0124 0.0628 41 1 8.6624 -4.6039 -1.2580 42 1 11.0744 -4.1545 -1.4351 43 1 12.0402 -2.1598 -0.3674 44 1 12.2773 2.7052 2.2768 45 1 8.1650 -1.0388 1.0492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276450428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:47 Heat of formation + Delta-G solvation = -98.026756 kcal Electronic energy + Delta-G solvation = -26604.966435 eV Core-core repulsion = 22780.651382 eV Total energy + Delta-G solvation = -3824.315052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83442 -40.89767 -40.22810 -38.40439 -36.80038 -35.45616 -34.27246 -31.86476 -31.35322 -30.52324 -28.70697 -28.16692 -28.01437 -27.31197 -24.04228 -23.14567 -21.97821 -20.82082 -20.02191 -19.60160 -19.04994 -17.95337 -17.23163 -16.78899 -16.76139 -16.61113 -16.30443 -16.05139 -15.96448 -15.70502 -15.51040 -15.13315 -15.01351 -14.53056 -14.27622 -14.17422 -13.74219 -13.61991 -13.34094 -13.16226 -12.97071 -12.88492 -12.79448 -12.73354 -12.36639 -12.29336 -12.13125 -12.12867 -12.09525 -11.96425 -11.54816 -11.34651 -11.10772 -10.75933 -10.52808 -10.07825 -9.31444 -8.84927 -8.47961 -6.17839 0.45661 0.71156 1.17335 1.32069 1.42925 1.51385 1.72845 2.08772 2.20800 2.82830 3.17534 3.25366 3.46461 3.70744 3.92548 3.97166 4.13256 4.15724 4.35146 4.37229 4.43400 4.46579 4.62453 4.66529 4.73746 4.75494 4.77654 4.81907 4.83064 4.88919 4.97497 5.06025 5.10529 5.12753 5.18373 5.24252 5.43563 5.46644 5.50817 5.55459 5.63529 5.69924 5.75276 6.02496 6.24403 6.59167 6.81143 6.95585 7.36066 7.79390 8.76087 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002839 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.563728 B = 9860.794923 C =11207.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.343 3.657 3 O -0.498 6.498 4 C -0.156 4.156 5 C -0.035 4.035 6 C -0.164 4.164 7 C -0.163 4.163 8 C -0.117 4.117 9 C 0.493 3.507 10 O -0.551 6.551 11 N -0.658 5.658 12 C 0.186 3.814 13 C -0.205 4.205 14 C -0.051 4.051 15 C -0.259 4.259 16 C 0.123 3.877 17 O -0.237 6.237 18 C -0.414 4.414 19 H 0.106 0.894 20 C -0.029 4.029 21 N -0.926 5.926 22 Si 1.024 2.976 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.247 1.247 26 C -0.214 4.214 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.431 0.569 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 -17.612 -6.549 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.222 3.778 3 O -0.376 6.376 4 C -0.193 4.193 5 C -0.035 4.035 6 C -0.221 4.221 7 C -0.220 4.220 8 C -0.156 4.156 9 C 0.283 3.717 10 O -0.428 6.428 11 N -0.305 5.305 12 C 0.091 3.909 13 C -0.225 4.225 14 C -0.069 4.069 15 C -0.278 4.278 16 C 0.072 3.928 17 O -0.144 6.144 18 C -0.490 4.490 19 H 0.123 0.877 20 C -0.226 4.226 21 N -0.564 5.564 22 Si 0.843 3.157 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.170 1.170 26 C -0.236 4.236 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.271 0.729 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.988 -15.907 -6.303 27.861 hybrid contribution 1.007 0.818 0.336 1.340 sum -20.981 -15.089 -5.967 26.523 Atomic orbital electron populations 1.22341 0.91971 1.04707 1.06623 1.25285 0.93397 0.90419 0.68697 1.90390 1.72549 1.37344 1.37279 1.22273 0.92061 0.97280 1.07699 1.20073 0.94753 0.93616 0.95063 1.22240 1.01789 1.00880 0.97223 1.22225 1.01870 1.00806 0.97055 1.21870 0.86584 0.99252 1.07931 1.21904 0.90820 0.84340 0.74643 1.90745 1.80685 1.23392 1.47960 1.43440 1.02806 1.11447 1.72856 1.17362 0.84172 0.94175 0.95207 1.20918 0.93339 1.02925 1.05361 1.21044 0.95307 0.94740 0.95817 1.21313 1.00385 0.98901 1.07245 1.19742 0.93110 0.87834 0.92109 1.83959 1.27357 1.39479 1.63620 1.21915 0.82664 1.07111 1.37261 0.87653 1.26747 1.06160 0.93988 0.95698 1.70239 1.39109 1.11019 1.36082 0.84519 0.73274 0.79502 0.78430 1.18911 1.19570 1.17019 1.20207 0.91924 1.02523 1.08941 0.86720 0.91706 0.86559 0.84760 0.85049 0.94221 0.92775 0.92194 0.91805 0.92829 0.94055 0.85016 0.84540 0.72894 0.81683 0.82364 0.86124 0.91935 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 10.26 71.23 0.73 -0.76 16 2 C 0.34 5.37 6.68 29.10 0.19 5.57 16 3 O -0.50 -13.69 12.08 -1.46 -0.02 -13.70 16 4 C -0.16 -1.56 4.71 29.85 0.14 -1.42 16 5 C -0.03 -0.70 0.51 -52.18 -0.03 -0.73 16 6 C -0.16 -4.77 7.88 71.98 0.57 -4.20 16 7 C -0.16 -4.48 7.88 71.98 0.57 -3.92 16 8 C -0.12 -1.75 4.77 29.85 0.14 -1.61 16 9 C 0.49 13.91 7.09 87.66 0.62 14.53 16 10 O -0.55 -23.01 8.79 -3.05 -0.03 -23.04 16 11 N -0.66 -16.55 5.34 -303.56 -1.62 -18.17 16 12 C 0.19 6.66 6.30 38.14 0.24 6.90 16 13 C -0.21 -6.09 9.96 22.43 0.22 -5.86 16 14 C -0.05 -1.70 10.03 22.23 0.22 -1.47 16 15 C -0.26 -11.73 9.17 22.41 0.21 -11.53 16 16 C 0.12 6.74 6.64 22.56 0.15 6.89 16 17 O -0.24 -15.67 9.76 -22.72 -0.22 -15.89 16 18 C -0.41 -25.67 9.49 67.92 0.64 -25.03 16 19 H 0.11 5.91 5.20 -2.91 -0.02 5.89 16 20 C -0.03 -1.77 5.49 84.83 0.47 -1.31 16 21 N -0.93 -61.05 13.67 21.61 0.30 -60.75 16 22 Si 1.02 45.23 29.55 68.60 2.03 47.26 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.21 -10.58 8.64 22.51 0.19 -10.39 16 27 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.04 1.53 5.51 -2.39 -0.01 1.52 16 33 H 0.05 1.76 5.52 -2.39 -0.01 1.75 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.68 5.52 -2.38 -0.01 1.66 16 37 H 0.04 1.52 5.51 -2.38 -0.01 1.51 16 38 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.43 5.97 8.82 -92.71 -0.82 5.15 16 41 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 42 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.12 5.50 5.63 -2.91 -0.02 5.48 16 44 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 45 H 0.10 5.51 6.23 -2.91 -0.02 5.49 16 Total: -1.00 -97.10 361.60 5.93 -91.17 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.21 Total: 27.48 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 5.28 Total: -34.35 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.32 Total: -78.92 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.27 Total: -52.64 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -97.10 5.93 -91.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276450428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.858 kcal (2) G-P(sol) polarization free energy of solvation -97.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds