Wall clock time and date at job start Tue Mar 31 2020 12:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47209 * 2 1 4 4 C 1.42903 * 114.00257 * 180.02562 * 3 2 1 5 5 C 1.53780 * 113.61712 * 210.00375 * 4 3 2 6 6 C 1.53777 * 87.07961 * 220.01553 * 5 4 3 7 7 O 1.42901 * 113.61549 * 270.79912 * 6 5 4 8 8 C 1.52998 * 113.61462 * 139.98042 * 6 5 4 9 9 N 1.46495 * 109.47520 * 186.53238 * 8 6 5 10 10 C 1.34779 * 120.00267 * 180.02562 * 9 8 6 11 11 O 1.21548 * 119.99778 * 359.97438 * 10 9 8 12 12 C 1.47889 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.39925 * 120.02382 * 0.24705 * 12 10 9 14 14 C 1.38326 * 120.35506 * 180.30096 * 13 12 10 15 15 C 1.37757 * 120.41318 * 359.44780 * 14 13 12 16 16 C 1.40744 * 120.03752 * 0.27637 * 15 14 13 17 17 C 1.41442 * 120.17543 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00065 * 334.96793 * 17 16 15 19 19 C 1.39939 * 119.99713 * 154.96949 * 17 16 15 20 20 N 1.30824 * 120.00242 * 342.56773 * 19 17 16 21 21 Si 1.86803 * 119.99771 * 162.57236 * 19 17 16 22 22 H 1.48498 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47313 * 119.99635 * 21 19 17 24 24 H 1.48503 * 109.46603 * 239.99399 * 21 19 17 25 25 C 1.38991 * 120.02605 * 179.97438 * 12 10 9 26 26 C 1.53784 * 87.17480 * 25.39034 * 6 5 4 27 27 H 1.08995 * 109.47338 * 59.99324 * 1 2 3 28 28 H 1.08998 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46469 * 299.99615 * 1 2 3 30 30 H 1.09007 * 109.46469 * 240.00385 * 2 1 3 31 31 H 1.08995 * 109.47338 * 120.00676 * 2 1 3 32 32 H 1.09004 * 112.84542 * 341.20275 * 4 3 2 33 33 H 1.09002 * 113.61511 * 105.46810 * 5 4 3 34 34 H 1.08999 * 113.68981 * 334.57899 * 5 4 3 35 35 H 0.96708 * 113.99985 * 178.47180 * 7 6 5 36 36 H 1.08995 * 109.47111 * 66.52686 * 8 6 5 37 37 H 1.09001 * 109.47395 * 306.53221 * 8 6 5 38 38 H 0.97002 * 120.00293 * 359.97438 * 9 8 6 39 39 H 1.07994 * 119.82075 * 0.02562 * 13 12 10 40 40 H 1.07997 * 119.79534 * 179.73069 * 14 13 12 41 41 H 1.07996 * 119.97701 * 180.30072 * 15 14 13 42 42 H 0.96993 * 119.99950 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.19944 * 359.95603 * 25 12 10 44 44 H 1.09001 * 113.61254 * 89.15640 * 26 6 5 45 45 H 1.09003 * 113.61581 * 220.06278 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9490 2.7250 0.7040 6 6 4.9897 2.8313 -0.4232 7 8 6.2022 2.1256 -0.1512 8 6 5.2309 4.2645 -0.9015 9 7 6.1128 4.2471 -2.0711 10 6 6.4656 5.4037 -2.6664 11 8 6.0517 6.4612 -2.2330 12 6 7.3563 5.3861 -3.8468 13 6 7.8289 4.1687 -4.3492 14 6 8.6674 4.1447 -5.4491 15 6 9.0377 5.3176 -6.0695 16 6 8.5677 6.5514 -5.5818 17 6 8.9465 7.7575 -6.2161 18 1 9.8657 7.8049 -6.7811 19 6 8.1302 8.8893 -6.1116 20 7 6.8832 8.7642 -5.7362 21 14 8.8211 10.5790 -6.5083 22 1 10.2463 10.4503 -6.9051 23 1 8.0483 11.1802 -7.6247 24 1 8.7180 11.4496 -5.3096 25 6 7.7201 6.5785 -4.4614 26 6 4.0039 2.0456 -1.3040 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9280 0.5455 0.3228 33 1 4.3850 2.5314 1.6840 34 1 3.2314 3.5454 0.7146 35 1 6.8516 2.1694 -0.8664 36 1 5.6981 4.8403 -0.1026 37 1 4.2792 4.7227 -1.1708 38 1 6.4434 3.4032 -2.4168 39 1 7.5411 3.2432 -3.8730 40 1 9.0303 3.2002 -5.8267 41 1 9.6888 5.2904 -6.9307 42 1 6.3174 9.5486 -5.6642 43 1 7.3535 7.5202 -4.0800 44 1 3.3006 2.6793 -1.8443 45 1 4.4843 1.3043 -1.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277713456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:19 Heat of formation + Delta-G solvation = -117.949008 kcal Electronic energy + Delta-G solvation = -26116.009773 eV Core-core repulsion = 22290.830828 eV Total energy + Delta-G solvation = -3825.178946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49174 -40.53627 -38.85066 -38.27195 -35.72518 -35.32328 -35.24324 -32.21480 -31.72043 -31.28452 -28.81977 -27.15027 -26.89980 -24.49803 -23.72742 -23.07989 -22.70043 -21.37341 -20.84929 -19.69595 -18.48742 -17.70322 -17.33300 -17.25416 -16.79071 -16.62134 -16.49711 -16.27507 -16.03023 -15.50370 -15.07620 -14.94484 -14.71136 -14.37265 -14.26830 -14.03217 -13.90100 -13.62405 -13.43496 -13.20177 -12.96942 -12.91028 -12.80162 -12.58733 -12.52766 -12.20834 -12.18313 -11.92216 -11.85941 -11.59685 -11.49989 -11.09225 -10.91648 -10.79400 -10.39394 -10.24091 -9.48075 -9.38628 -8.67325 -6.38921 0.36242 1.00037 1.35971 1.45931 1.52106 2.07009 2.09333 2.18687 2.73156 2.77529 2.91126 3.35160 3.52925 3.69294 3.69826 3.74161 4.00866 4.09997 4.20602 4.32914 4.42168 4.45596 4.51627 4.58611 4.62197 4.70267 4.73312 4.83455 4.90044 4.94444 5.04655 5.06588 5.08418 5.11238 5.18655 5.29225 5.30070 5.34749 5.51380 5.85181 5.91450 6.04944 6.28116 6.32901 6.44794 6.58820 6.65717 6.87602 6.94063 7.25108 8.29690 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.002429 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.878286 B =11523.882921 C =11920.340929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.076 3.924 5 C -0.119 4.119 6 C 0.109 3.891 7 O -0.542 6.542 8 C 0.108 3.892 9 N -0.710 5.710 10 C 0.562 3.438 11 O -0.588 6.588 12 C -0.139 4.139 13 C -0.194 4.194 14 C -0.096 4.096 15 C -0.216 4.216 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.028 3.972 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.251 1.251 23 H -0.264 1.264 24 H -0.271 1.271 25 C -0.131 4.131 26 C -0.176 4.176 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.391 0.609 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.411 0.589 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.286 0.714 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -17.759 10.024 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.018 3.982 5 C -0.156 4.156 6 C 0.067 3.933 7 O -0.350 6.350 8 C -0.015 4.015 9 N -0.364 5.364 10 C 0.352 3.648 11 O -0.469 6.469 12 C -0.142 4.142 13 C -0.214 4.214 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.452 5.452 21 Si 0.803 3.197 22 H -0.174 1.174 23 H -0.189 1.189 24 H -0.196 1.196 25 C -0.152 4.152 26 C -0.214 4.214 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.012 -16.890 10.942 21.660 hybrid contribution 0.629 0.860 -0.978 1.447 sum -7.382 -16.030 9.963 20.266 Atomic orbital electron populations 1.21778 0.93192 1.03325 1.02566 1.22708 0.96191 0.83033 1.00870 1.87929 1.20993 1.27966 1.94614 1.23563 0.80784 0.98180 0.95698 1.23302 0.95293 0.98916 0.98128 1.21999 0.85222 0.88298 0.97774 1.86481 1.26986 1.74347 1.47167 1.21877 0.94641 0.97525 0.87502 1.45552 1.50863 1.08547 1.31456 1.18744 0.79642 0.83416 0.82956 1.90687 1.57102 1.32699 1.66409 1.19746 1.01730 0.95640 0.97086 1.20859 1.04353 0.95179 1.01015 1.20945 0.97268 0.97625 0.95498 1.21427 1.07361 0.92430 1.02352 1.17959 0.91166 0.93930 0.90609 1.19888 1.07286 0.95318 1.30142 0.89811 1.26856 0.94004 1.05305 0.92485 1.69888 1.06571 1.33515 1.35230 0.85159 0.79943 0.75984 0.78660 1.17395 1.18874 1.19623 1.21445 1.01198 0.96520 0.96036 1.24217 0.98546 1.00604 0.97995 0.92642 0.89195 0.92256 0.92729 0.92246 0.87831 0.89060 0.87696 0.75832 0.91760 0.91202 0.75028 0.84196 0.84162 0.87384 0.90350 0.88498 0.89226 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.40 -7.74 10.36 -148.98 -1.54 -9.28 16 4 C 0.08 1.31 4.25 31.18 0.13 1.44 16 5 C -0.12 -2.16 7.31 31.12 0.23 -1.93 16 6 C 0.11 2.11 1.38 -10.27 -0.01 2.10 16 7 O -0.54 -9.95 13.41 -148.98 -2.00 -11.95 16 8 C 0.11 2.84 5.24 86.38 0.45 3.30 16 9 N -0.71 -20.89 5.28 -465.94 -2.46 -23.35 16 10 C 0.56 24.08 7.77 86.80 0.67 24.75 16 11 O -0.59 -30.43 16.33 -3.87 -0.06 -30.50 16 12 C -0.14 -6.39 5.87 -20.13 -0.12 -6.51 16 13 C -0.19 -7.20 9.55 22.70 0.22 -6.99 16 14 C -0.10 -3.62 10.01 22.18 0.22 -3.40 16 15 C -0.22 -9.89 9.78 22.77 0.22 -9.67 16 16 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 17 C -0.50 -27.05 9.05 23.47 0.21 -26.83 16 18 H 0.08 4.31 7.90 -2.91 -0.02 4.28 16 19 C 0.03 1.48 5.14 85.26 0.44 1.92 16 20 N -0.83 -46.33 10.97 21.82 0.24 -46.09 16 21 Si 0.98 39.84 29.59 68.60 2.03 41.87 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 C -0.13 -7.25 8.23 23.01 0.19 -7.06 16 26 C -0.18 -3.16 7.32 31.18 0.23 -2.93 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.10 1.54 7.87 -2.38 -0.02 1.52 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 35 H 0.39 5.24 7.72 -74.05 -0.57 4.67 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.41 9.14 5.43 -92.71 -0.50 8.64 16 39 H 0.14 3.67 6.38 -2.91 -0.02 3.65 16 40 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 43 H 0.10 6.00 5.76 -2.91 -0.02 5.99 16 44 H 0.09 1.86 8.06 -2.39 -0.02 1.84 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.30 375.36 0.32 -70.98 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.06 Total: 36.65 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.17 Total: -28.33 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -2.22 Total: -69.43 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -3.60 Total: -51.73 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -71.30 0.32 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277713456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.968 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds