Wall clock time and date at job start Tue Mar 31 2020 12:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46934 * 2 1 4 4 C 1.46894 * 111.00481 * 295.91006 * 3 2 1 5 5 C 1.50698 * 109.46953 * 288.42992 * 4 3 2 6 6 H 1.07995 * 120.00526 * 0.67877 * 5 4 3 7 7 C 1.37879 * 119.99705 * 180.68521 * 5 4 3 8 8 N 1.31525 * 119.99741 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00340 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47191 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47441 * 209.99903 * 9 7 5 12 12 H 1.48503 * 109.47034 * 329.99888 * 9 7 5 13 13 C 1.46900 * 110.99755 * 59.86865 * 3 2 1 14 14 C 1.52999 * 109.47482 * 66.04016 * 13 3 2 15 15 C 1.50705 * 109.47049 * 180.02562 * 14 13 3 16 16 O 1.21287 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.46861 * 119.99998 * 180.02562 * 15 14 13 18 18 C 1.40021 * 120.12307 * 359.72774 * 17 15 14 19 19 C 1.37604 * 119.93532 * 179.75317 * 18 17 15 20 20 C 1.39107 * 120.30699 * 0.59250 * 19 18 17 21 21 C 1.39361 * 120.08531 * 359.60395 * 20 19 18 22 22 C 1.38176 * 119.98601 * 0.12288 * 21 20 19 23 23 O 1.36147 * 120.75094 * 180.26812 * 21 20 19 24 24 C 1.43171 * 116.71066 * 342.87193 * 23 21 20 25 25 C 1.53465 * 108.23282 * 46.13008 * 24 23 21 26 26 O 1.35922 * 119.21528 * 179.51137 * 20 19 18 27 27 H 1.09001 * 109.47081 * 178.42685 * 1 2 3 28 28 H 1.09009 * 109.46915 * 298.42129 * 1 2 3 29 29 H 1.08999 * 109.47785 * 58.42167 * 1 2 3 30 30 H 1.09006 * 109.46509 * 240.00730 * 2 1 3 31 31 H 1.08995 * 109.47038 * 120.00592 * 2 1 3 32 32 H 1.08999 * 109.46977 * 48.42826 * 4 3 2 33 33 H 1.08996 * 109.47523 * 168.42689 * 4 3 2 34 34 H 0.96999 * 119.99579 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.47233 * 306.03907 * 13 3 2 36 36 H 1.09004 * 109.47136 * 186.04406 * 13 3 2 37 37 H 1.08994 * 109.47002 * 299.99828 * 14 13 3 38 38 H 1.08999 * 109.47113 * 60.00506 * 14 13 3 39 39 H 1.07997 * 120.03307 * 0.02562 * 18 17 15 40 40 H 1.08000 * 119.84676 * 180.28992 * 19 18 17 41 41 H 1.07998 * 120.03415 * 179.97438 * 22 21 20 42 42 H 1.08991 * 109.71322 * 165.82060 * 24 23 21 43 43 H 1.09006 * 109.70140 * 286.45165 * 24 23 21 44 44 H 1.09000 * 109.70805 * 59.85849 * 25 24 23 45 45 H 1.09005 * 109.70225 * 180.47662 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6302 2.0812 -1.2335 5 6 2.4340 1.5432 -2.3891 6 1 3.1536 0.7547 -2.2257 7 6 2.2509 2.0578 -3.6550 8 7 2.9528 1.5886 -4.6635 9 14 1.0058 3.4213 -3.9379 10 1 1.6681 4.7395 -3.7674 11 1 0.4604 3.3159 -5.3151 12 1 -0.1008 3.2927 -2.9561 13 6 1.5460 2.1108 1.1861 14 6 2.1748 1.5023 2.4412 15 6 1.6883 2.2465 3.6581 16 8 0.9145 3.1721 3.5337 17 6 2.1513 1.8509 4.9945 18 6 3.0402 0.7791 5.1415 19 6 3.4754 0.4150 6.3951 20 6 3.0269 1.0992 7.5202 21 6 2.1389 2.1644 7.3821 22 6 1.7012 2.5403 6.1266 23 8 1.6955 2.8470 8.4734 24 6 1.8649 2.2092 9.7440 25 6 3.2936 1.6535 9.8156 26 8 3.4634 0.7145 8.7485 27 1 -0.3633 -1.0273 -0.0282 28 1 -0.3633 0.4892 0.9039 29 1 -0.3634 0.5381 -0.8754 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.5690 1.9192 -1.4225 33 1 1.8209 3.1487 -1.1240 34 1 2.8242 1.9510 -5.5541 35 1 0.4605 2.0339 1.2498 36 1 1.8319 3.1597 1.1085 37 1 1.8888 0.4534 2.5189 38 1 3.2602 1.5793 2.3777 39 1 3.3873 0.2415 4.2716 40 1 4.1647 -0.4089 6.5065 41 1 1.0127 3.3654 6.0187 42 1 1.7121 2.9347 10.5428 43 1 1.1479 1.3942 9.8445 44 1 4.0104 2.4673 9.7067 45 1 3.4461 1.1541 10.7725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278584222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:54 Heat of formation + Delta-G solvation = -96.421047 kcal Electronic energy + Delta-G solvation = -26165.204129 eV Core-core repulsion = 22340.958706 eV Total energy + Delta-G solvation = -3824.245423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34153 -40.84693 -38.98389 -38.36215 -38.21232 -34.79021 -33.17221 -32.06047 -31.82635 -31.28458 -29.89624 -28.41364 -26.25072 -25.36792 -24.61851 -23.44838 -22.70749 -20.92448 -20.31415 -19.67981 -18.87004 -18.35596 -18.31485 -17.12799 -17.03054 -16.62106 -16.51062 -16.22953 -15.96654 -15.86169 -15.52193 -15.45140 -14.96229 -14.83060 -14.65993 -14.37125 -14.26907 -14.07921 -13.62572 -13.47960 -13.31191 -13.08581 -12.78380 -12.70831 -12.43365 -12.22076 -12.16469 -12.04394 -11.99044 -11.85004 -11.54242 -11.42291 -11.33205 -10.76826 -10.73830 -9.80041 -9.22807 -8.92865 -8.26109 -6.26970 -0.46616 0.21720 1.31336 1.33996 1.34779 1.45155 1.96103 2.15889 2.34773 2.64959 2.88404 3.07375 3.17249 3.48825 3.57430 3.87571 3.92680 4.00659 4.05038 4.09882 4.19094 4.26624 4.30525 4.40269 4.48503 4.56366 4.58379 4.61750 4.70085 4.74081 4.76091 4.92998 4.97015 5.00520 5.04725 5.08928 5.14652 5.23822 5.31492 5.46249 5.48676 5.59510 5.80782 6.02548 6.28430 6.44580 6.51662 6.68337 6.78990 7.35789 8.90298 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030362 B = 0.002279 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.979102 B =12281.500553 C =12621.957213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 N -0.536 5.536 4 C 0.166 3.834 5 C -0.505 4.505 6 H 0.044 0.956 7 C 0.009 3.991 8 N -0.946 5.946 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.257 1.257 13 C 0.059 3.941 14 C -0.151 4.151 15 C 0.408 3.592 16 O -0.493 6.493 17 C -0.176 4.176 18 C -0.051 4.051 19 C -0.127 4.127 20 C 0.078 3.922 21 C 0.024 3.976 22 C -0.073 4.073 23 O -0.327 6.327 24 C 0.012 3.988 25 C 0.014 3.986 26 O -0.313 6.313 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.099 0.901 32 H -0.004 1.004 33 H 0.016 0.984 34 H 0.266 0.734 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -3.310 33.634 33.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.073 4.073 3 N -0.259 5.259 4 C 0.038 3.962 5 C -0.543 4.543 6 H 0.062 0.938 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.762 3.238 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.181 1.181 13 C -0.069 4.069 14 C -0.188 4.188 15 C 0.288 3.712 16 O -0.372 6.372 17 C -0.177 4.177 18 C -0.069 4.069 19 C -0.145 4.145 20 C 0.032 3.968 21 C -0.021 4.021 22 C -0.092 4.092 23 O -0.243 6.243 24 C -0.063 4.063 25 C -0.061 4.061 26 O -0.227 6.227 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.013 0.987 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.598 -2.810 33.482 33.605 hybrid contribution -1.356 0.928 -0.595 1.748 sum -1.954 -1.882 32.887 32.998 Atomic orbital electron populations 1.22344 0.98469 1.02606 1.00973 1.22121 0.92848 0.89893 1.02460 1.62078 1.59480 1.02861 1.01466 1.19984 0.93962 0.93799 0.88409 1.21231 1.21334 1.20011 0.91739 0.93789 1.25745 0.97934 0.99278 0.95840 1.70037 1.43151 1.44813 1.00753 0.85847 0.80148 0.79960 0.77797 1.19340 1.20608 1.18066 1.21885 0.97346 0.97584 0.90086 1.21993 1.04290 1.02062 0.90466 1.22634 0.77193 0.81277 0.90083 1.90527 1.30105 1.27343 1.89178 1.20200 1.03701 1.00494 0.93347 1.21573 0.93182 0.93790 0.98400 1.20764 1.02414 1.02476 0.88866 1.19473 0.94582 0.95648 0.87131 1.18784 0.98506 0.96539 0.88283 1.20643 0.99089 1.00121 0.89341 1.86325 1.79034 1.44482 1.14445 1.24011 0.97319 1.00914 0.84011 1.24025 0.96871 0.94103 0.91055 1.86267 1.78191 1.43145 1.15101 0.90579 0.92126 0.94742 0.92706 0.88320 0.98670 0.96561 0.92540 0.95034 0.92663 0.85587 0.85697 0.80877 0.81549 0.85291 0.82922 0.89998 0.89930 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.93 9.26 71.98 0.67 -5.26 16 2 C 0.05 1.90 5.69 86.30 0.49 2.39 16 3 N -0.54 -21.52 4.66 -900.80 -4.20 -25.72 16 4 C 0.17 8.11 3.67 85.56 0.31 8.42 16 5 C -0.50 -29.30 9.09 25.60 0.23 -29.07 16 6 H 0.04 2.81 7.72 -2.91 -0.02 2.78 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.94 45.41 27.45 68.60 1.88 47.29 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -11.84 6.56 99.48 0.65 -11.19 16 13 C 0.06 2.00 3.99 86.30 0.34 2.35 16 14 C -0.15 -3.62 4.23 29.85 0.13 -3.50 16 15 C 0.41 10.59 7.11 27.95 0.20 10.78 16 16 O -0.49 -16.56 15.96 -3.05 -0.05 -16.61 16 17 C -0.18 -3.85 5.87 -20.17 -0.12 -3.96 16 18 C -0.05 -0.81 9.46 22.55 0.21 -0.59 16 19 C -0.13 -1.92 9.94 22.33 0.22 -1.70 16 20 C 0.08 1.41 6.51 22.75 0.15 1.56 16 21 C 0.02 0.50 6.48 22.53 0.15 0.65 16 22 C -0.07 -1.74 9.50 22.68 0.22 -1.52 16 23 O -0.33 -6.29 10.41 -83.05 -0.86 -7.15 16 24 C 0.01 0.11 7.26 72.14 0.52 0.63 16 25 C 0.01 0.11 7.25 72.14 0.52 0.63 16 26 O -0.31 -4.72 10.40 -80.49 -0.84 -5.56 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.77 6.36 -2.38 -0.02 1.76 16 29 H 0.03 1.29 6.21 -2.39 -0.01 1.28 16 30 H 0.05 2.25 7.15 -2.38 -0.02 2.23 16 31 H 0.10 2.60 6.48 -2.39 -0.02 2.58 16 32 H 0.00 -0.21 5.02 -2.39 -0.01 -0.22 16 33 H 0.02 0.81 7.21 -2.39 -0.02 0.79 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.03 1.10 5.99 -2.38 -0.01 1.08 16 36 H 0.05 2.05 7.82 -2.39 -0.02 2.03 16 37 H 0.13 2.35 6.49 -2.39 -0.02 2.34 16 38 H 0.13 2.67 8.09 -2.39 -0.02 2.65 16 39 H 0.17 1.74 7.04 -2.91 -0.02 1.72 16 40 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.13 3.36 7.64 -2.91 -0.02 3.34 16 42 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.16 0.08 8.14 -2.38 -0.02 0.06 16 Total: -1.00 -77.02 360.70 1.90 -75.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.95 Total: 9.04 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 4.71 Total: -17.18 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.90 Total: -84.96 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.75 Total: -29.32 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -77.02 1.90 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278584222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.293 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds