Wall clock time and date at job start Tue Mar 31 2020 12:28:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46504 * 109.46868 * 2 1
4 4 C 1.46504 * 120.00020 * 270.27499 * 3 2 1
5 5 C 1.52994 * 109.47133 * 281.56335 * 4 3 2
6 6 C 1.34773 * 119.99820 * 90.00036 * 3 2 1
7 7 O 1.21578 * 120.00059 * 356.64427 * 6 3 2
8 8 C 1.47648 * 119.99961 * 176.64333 * 6 3 2
9 9 C 1.39712 * 120.08595 * 322.09505 * 8 6 3
10 10 C 1.37728 * 119.90561 * 179.74328 * 9 8 6
11 11 C 1.38973 * 120.09377 * 0.52917 * 10 9 8
12 12 O 1.35766 * 119.91028 * 179.69792 * 11 10 9
13 13 C 1.34296 * 116.99849 * 255.75510 * 12 11 10
14 14 O 1.20819 * 120.00502 * 3.09961 * 13 12 11
15 15 C 1.50703 * 119.99735 * 183.10268 * 13 12 11
16 16 C 1.52995 * 109.47107 * 179.97438 * 15 13 12
17 17 C 1.50703 * 109.47107 * 179.97438 * 16 15 13
18 18 H 1.07998 * 120.00281 * 0.02562 * 17 16 15
19 19 C 1.37882 * 119.99865 * 180.02562 * 17 16 15
20 20 N 1.31517 * 119.99898 * 179.97438 * 19 17 16
21 21 Si 1.86798 * 120.00239 * 0.02562 * 19 17 16
22 22 H 1.48494 * 109.47228 * 89.99594 * 21 19 17
23 23 H 1.48497 * 109.47313 * 209.99945 * 21 19 17
24 24 H 1.48502 * 109.47183 * 329.99857 * 21 19 17
25 25 C 1.38963 * 120.17338 * 359.72212 * 11 10 9
26 26 C 1.37733 * 120.09089 * 0.02562 * 25 11 10
27 27 H 1.08992 * 109.46933 * 299.99806 * 1 2 3
28 28 H 1.09002 * 109.47528 * 60.00148 * 1 2 3
29 29 H 1.09006 * 109.46943 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47228 * 240.00667 * 2 1 3
31 31 H 1.08993 * 109.47273 * 119.99698 * 2 1 3
32 32 H 1.09004 * 109.47042 * 41.56397 * 4 3 2
33 33 H 1.08996 * 109.46567 * 161.56325 * 4 3 2
34 34 H 1.09000 * 109.46961 * 319.35971 * 5 4 3
35 35 H 1.09001 * 109.47013 * 79.35515 * 5 4 3
36 36 H 1.08997 * 109.47214 * 199.35606 * 5 4 3
37 37 H 1.07996 * 120.04733 * 359.96992 * 9 8 6
38 38 H 1.08002 * 119.95459 * 180.23110 * 10 9 8
39 39 H 1.09003 * 109.47377 * 300.00228 * 15 13 12
40 40 H 1.09007 * 109.47113 * 60.00049 * 15 13 12
41 41 H 1.08997 * 109.47505 * 300.00051 * 16 15 13
42 42 H 1.09001 * 109.47491 * 59.99901 * 16 15 13
43 43 H 0.96998 * 120.00111 * 179.97438 * 20 19 17
44 44 H 1.08002 * 119.95466 * 179.97438 * 25 11 10
45 45 H 1.08003 * 120.04545 * 179.97438 * 26 25 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2567 2.0740 -1.2687
5 6 3.5879 1.6082 -1.8617
6 6 2.2429 2.0166 1.1672
7 8 1.9827 1.4654 2.2192
8 6 2.8049 3.3819 1.1683
9 6 3.7841 3.7370 0.2371
10 6 4.3020 5.0132 0.2381
11 6 3.8599 5.9439 1.1707
12 8 4.3775 7.1991 1.1722
13 6 5.2663 7.4909 2.1357
14 8 5.6136 6.6365 2.9162
15 6 5.8305 8.8841 2.2435
16 6 6.8115 8.9478 3.4158
17 6 7.3761 10.3409 3.5232
18 1 7.0660 11.1046 2.8254
19 6 8.2888 10.6405 4.5124
20 7 8.7819 11.8561 4.6058
21 14 8.8258 9.3195 5.7190
22 1 10.0152 8.6117 5.1809
23 1 9.1700 9.9476 7.0198
24 1 7.7191 8.3490 5.9154
25 6 2.8899 5.5931 2.1019
26 6 2.3632 4.3204 2.1042
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5137 -0.8900
31 1 1.8934 -0.5137 0.8899
32 1 1.4493 1.8458 -1.9646
33 1 2.2930 3.1492 -1.0943
34 1 4.3266 1.5128 -1.0659
35 1 3.4510 0.6423 -2.3480
36 1 3.9346 2.3376 -2.5938
37 1 4.1318 3.0129 -0.4847
38 1 5.0563 5.2896 -0.4837
39 1 6.3505 9.1380 1.3198
40 1 5.0191 9.5928 2.4102
41 1 6.2911 8.6941 4.3393
42 1 7.6228 8.2391 3.2496
43 1 9.4237 12.0670 5.3019
44 1 2.5492 6.3191 2.8252
45 1 1.6096 4.0484 2.8285
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291243447.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:59
Heat of formation + Delta-G solvation = -81.883901 kcal
Electronic energy + Delta-G solvation = -26089.385154 eV
Core-core repulsion = 22265.770108 eV
Total energy + Delta-G solvation = -3823.615046 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.34196 -40.58359 -38.38106 -36.70210 -36.63541 -33.71618 -32.96553 -31.58825
-31.26477 -30.70449 -29.70976 -26.80618 -24.73469 -24.08100 -23.42166 -22.80125
-21.71136 -20.09019 -19.67970 -18.23039 -17.84147 -17.30292 -17.12795 -16.36229
-16.09358 -15.67831 -15.38774 -15.04545 -14.73470 -14.22029 -14.17495 -14.08058
-13.65543 -13.50286 -13.28360 -13.17620 -12.98048 -12.80010 -12.70994 -12.50017
-12.44262 -12.08023 -11.77806 -11.64868 -11.54633 -11.41297 -11.08288 -10.77034
-10.44347 -10.30672 -10.21446 -10.07947 -9.80789 -9.32193 -9.29611 -9.16576
-8.87617 -8.60109 -6.11631 -4.12227 0.49292 1.06258 2.33168 2.45310
2.55260 2.92213 3.31605 3.39052 3.47757 3.57261 4.07177 4.32256
4.42360 4.54943 4.58784 4.62872 4.67877 4.84881 4.88229 4.89357
4.99504 5.04892 5.15260 5.18250 5.22922 5.27893 5.37817 5.49136
5.53306 5.62806 5.70133 5.79271 5.81217 5.86993 5.94127 5.99002
6.10191 6.15793 6.28195 6.50677 6.74851 6.94491 7.15774 7.22490
7.64507 7.80585 8.07184 8.40948 8.90035 9.49720 11.00701
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028262 B = 0.002294 C = 0.002238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 990.479978 B =12203.469997 C =12510.815961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.112 3.888
3 N -0.609 5.609
4 C 0.092 3.908
5 C -0.181 4.181
6 C 0.564 3.436
7 O -0.531 6.531
8 C -0.142 4.142
9 C -0.090 4.090
10 C -0.130 4.130
11 C 0.121 3.879
12 O -0.305 6.305
13 C 0.456 3.544
14 O -0.488 6.488
15 C -0.092 4.092
16 C -0.003 4.003
17 C -0.529 4.529
18 H 0.076 0.924
19 C 0.072 3.928
20 N -0.898 5.898
21 Si 0.877 3.123
22 H -0.276 1.276
23 H -0.286 1.286
24 H -0.262 1.262
25 C -0.131 4.131
26 C -0.047 4.047
27 H 0.060 0.940
28 H 0.055 0.945
29 H 0.066 0.934
30 H 0.077 0.923
31 H 0.084 0.916
32 H 0.078 0.922
33 H 0.094 0.906
34 H 0.067 0.933
35 H 0.063 0.937
36 H 0.074 0.926
37 H 0.150 0.850
38 H 0.138 0.862
39 H 0.103 0.897
40 H 0.103 0.897
41 H 0.027 0.973
42 H 0.022 0.978
43 H 0.265 0.735
44 H 0.136 0.864
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.169 -21.798 -16.065 31.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.011 4.011
3 N -0.343 5.343
4 C -0.031 4.031
5 C -0.239 4.239
6 C 0.353 3.647
7 O -0.408 6.408
8 C -0.145 4.145
9 C -0.108 4.108
10 C -0.148 4.148
11 C 0.079 3.921
12 O -0.221 6.221
13 C 0.301 3.699
14 O -0.372 6.372
15 C -0.129 4.129
16 C -0.040 4.040
17 C -0.566 4.566
18 H 0.094 0.906
19 C -0.130 4.130
20 N -0.537 5.537
21 Si 0.703 3.297
22 H -0.201 1.201
23 H -0.212 1.212
24 H -0.186 1.186
25 C -0.150 4.150
26 C -0.066 4.066
27 H 0.079 0.921
28 H 0.074 0.926
29 H 0.085 0.915
30 H 0.096 0.904
31 H 0.102 0.898
32 H 0.097 0.903
33 H 0.112 0.888
34 H 0.086 0.914
35 H 0.082 0.918
36 H 0.093 0.907
37 H 0.167 0.833
38 H 0.156 0.844
39 H 0.121 0.879
40 H 0.121 0.879
41 H 0.045 0.955
42 H 0.041 0.959
43 H 0.075 0.925
44 H 0.154 0.846
45 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -16.066 -22.280 -15.146 31.367
hybrid contribution 0.382 -0.596 0.605 0.931
sum -15.684 -22.876 -14.541 31.317
Atomic orbital electron populations
1.22125 0.95760 1.02287 1.02443 1.21427 0.94545 0.81859 1.03220
1.47948 1.66110 1.14327 1.05902 1.21913 0.97768 0.98507 0.84942
1.22391 0.97407 1.02543 1.01580 1.18345 0.77440 0.85519 0.83424
1.90797 1.51729 1.67300 1.30974 1.19854 1.01134 0.94193 0.99342
1.21777 0.95257 0.96312 0.97488 1.21134 1.00906 0.92220 1.00548
1.18878 0.93475 0.84085 0.95692 1.84681 1.55359 1.28894 1.53211
1.25305 0.75075 0.93012 0.76542 1.90680 1.56713 1.49603 1.40177
1.21621 1.00826 0.86411 1.04056 1.19516 0.93781 0.98378 0.92349
1.20989 1.25176 0.94406 1.16075 0.90550 1.24950 0.95539 0.95339
0.97215 1.69898 1.30523 1.19300 1.33934 0.86813 0.79783 0.82336
0.80729 1.20128 1.21244 1.18602 1.21332 0.97551 0.97233 0.98870
1.21015 0.98312 0.91403 0.95897 0.92069 0.92584 0.91529 0.90422
0.89789 0.90343 0.88756 0.91410 0.91817 0.90711 0.83284 0.84372
0.87892 0.87853 0.95495 0.95942 0.92528 0.84568 0.84477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.06 10.24 37.16 0.38 -0.68 16
2 C 0.11 0.77 6.08 -4.04 -0.02 0.75 16
3 N -0.61 -5.06 2.49 -174.87 -0.43 -5.49 16
4 C 0.09 0.51 5.57 -4.04 -0.02 0.48 16
5 C -0.18 -0.79 8.64 37.15 0.32 -0.47 16
6 C 0.56 6.66 7.34 -12.42 -0.09 6.57 16
7 O -0.53 -8.11 16.49 5.30 0.09 -8.02 16
8 C -0.14 -1.66 5.14 -104.96 -0.54 -2.20 16
9 C -0.09 -0.91 7.43 -39.22 -0.29 -1.20 16
10 C -0.13 -1.50 9.97 -39.50 -0.39 -1.90 16
11 C 0.12 1.70 5.11 -39.04 -0.20 1.50 16
12 O -0.30 -4.71 10.02 -23.21 -0.23 -4.94 16
13 C 0.46 8.23 7.80 36.01 0.28 8.51 16
14 O -0.49 -10.31 15.55 -18.74 -0.29 -10.60 16
15 C -0.09 -1.70 5.75 -27.88 -0.16 -1.86 16
16 C 0.00 -0.06 3.33 -27.88 -0.09 -0.16 16
17 C -0.53 -14.58 9.66 -34.44 -0.33 -14.91 16
18 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16
19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
20 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16
21 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16
22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
24 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16
25 C -0.13 -1.75 9.62 -39.50 -0.38 -2.13 16
26 C -0.05 -0.59 9.61 -39.22 -0.38 -0.96 16
27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
30 H 0.08 0.36 8.03 -51.93 -0.42 -0.06 16
31 H 0.08 0.72 7.47 -51.93 -0.39 0.33 16
32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16
33 H 0.09 0.57 5.15 -51.93 -0.27 0.31 16
34 H 0.07 0.38 6.69 -51.93 -0.35 0.03 16
35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
37 H 0.15 1.12 3.35 -52.49 -0.18 0.94 16
38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16
39 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16
40 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16
41 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16
42 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16
43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
44 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16
45 H 0.14 1.56 8.03 -52.48 -0.42 1.14 16
LS Contribution 374.45 15.07 5.64 5.64
Total: -1.00 -34.35 374.45 -7.74 -42.09
By element:
Atomic # 1 Polarization: 3.72 SS G_CDS: -6.59 Total: -2.87 kcal
Atomic # 6 Polarization: -4.67 SS G_CDS: -2.02 Total: -6.69 kcal
Atomic # 7 Polarization: -32.24 SS G_CDS: 0.34 Total: -31.90 kcal
Atomic # 8 Polarization: -23.12 SS G_CDS: -0.44 Total: -23.56 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -34.35 -7.74 -42.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291243447.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.798 kcal
(2) G-P(sol) polarization free energy of solvation -34.347 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds