Wall clock time and date at job start Tue Mar 31 2020 12:28:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46504 * 109.46868 * 2 1
4 4 C 1.46504 * 120.00020 * 270.27499 * 3 2 1
5 5 C 1.52994 * 109.47133 * 281.56335 * 4 3 2
6 6 C 1.34773 * 119.99820 * 90.00036 * 3 2 1
7 7 O 1.21578 * 120.00059 * 356.64427 * 6 3 2
8 8 C 1.47648 * 119.99961 * 176.64333 * 6 3 2
9 9 C 1.39712 * 120.08595 * 322.09505 * 8 6 3
10 10 C 1.37728 * 119.90561 * 179.74328 * 9 8 6
11 11 C 1.38973 * 120.09377 * 0.52917 * 10 9 8
12 12 O 1.35766 * 119.91028 * 179.69792 * 11 10 9
13 13 C 1.34296 * 116.99849 * 255.75510 * 12 11 10
14 14 O 1.20819 * 120.00502 * 3.09961 * 13 12 11
15 15 C 1.50703 * 119.99735 * 183.10268 * 13 12 11
16 16 C 1.52995 * 109.47107 * 179.97438 * 15 13 12
17 17 C 1.50703 * 109.47107 * 179.97438 * 16 15 13
18 18 H 1.07998 * 120.00281 * 0.02562 * 17 16 15
19 19 C 1.37882 * 119.99865 * 180.02562 * 17 16 15
20 20 N 1.31517 * 119.99898 * 179.97438 * 19 17 16
21 21 Si 1.86798 * 120.00239 * 0.02562 * 19 17 16
22 22 H 1.48494 * 109.47228 * 89.99594 * 21 19 17
23 23 H 1.48497 * 109.47313 * 209.99945 * 21 19 17
24 24 H 1.48502 * 109.47183 * 329.99857 * 21 19 17
25 25 C 1.38963 * 120.17338 * 359.72212 * 11 10 9
26 26 C 1.37733 * 120.09089 * 0.02562 * 25 11 10
27 27 H 1.08992 * 109.46933 * 299.99806 * 1 2 3
28 28 H 1.09002 * 109.47528 * 60.00148 * 1 2 3
29 29 H 1.09006 * 109.46943 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47228 * 240.00667 * 2 1 3
31 31 H 1.08993 * 109.47273 * 119.99698 * 2 1 3
32 32 H 1.09004 * 109.47042 * 41.56397 * 4 3 2
33 33 H 1.08996 * 109.46567 * 161.56325 * 4 3 2
34 34 H 1.09000 * 109.46961 * 319.35971 * 5 4 3
35 35 H 1.09001 * 109.47013 * 79.35515 * 5 4 3
36 36 H 1.08997 * 109.47214 * 199.35606 * 5 4 3
37 37 H 1.07996 * 120.04733 * 359.96992 * 9 8 6
38 38 H 1.08002 * 119.95459 * 180.23110 * 10 9 8
39 39 H 1.09003 * 109.47377 * 300.00228 * 15 13 12
40 40 H 1.09007 * 109.47113 * 60.00049 * 15 13 12
41 41 H 1.08997 * 109.47505 * 300.00051 * 16 15 13
42 42 H 1.09001 * 109.47491 * 59.99901 * 16 15 13
43 43 H 0.96998 * 120.00111 * 179.97438 * 20 19 17
44 44 H 1.08002 * 119.95466 * 179.97438 * 25 11 10
45 45 H 1.08003 * 120.04545 * 179.97438 * 26 25 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2567 2.0740 -1.2687
5 6 3.5879 1.6082 -1.8617
6 6 2.2429 2.0166 1.1672
7 8 1.9827 1.4654 2.2192
8 6 2.8049 3.3819 1.1683
9 6 3.7841 3.7370 0.2371
10 6 4.3020 5.0132 0.2381
11 6 3.8599 5.9439 1.1707
12 8 4.3775 7.1991 1.1722
13 6 5.2663 7.4909 2.1357
14 8 5.6136 6.6365 2.9162
15 6 5.8305 8.8841 2.2435
16 6 6.8115 8.9478 3.4158
17 6 7.3761 10.3409 3.5232
18 1 7.0660 11.1046 2.8254
19 6 8.2888 10.6405 4.5124
20 7 8.7819 11.8561 4.6058
21 14 8.8258 9.3195 5.7190
22 1 10.0152 8.6117 5.1809
23 1 9.1700 9.9476 7.0198
24 1 7.7191 8.3490 5.9154
25 6 2.8899 5.5931 2.1019
26 6 2.3632 4.3204 2.1042
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5137 -0.8900
31 1 1.8934 -0.5137 0.8899
32 1 1.4493 1.8458 -1.9646
33 1 2.2930 3.1492 -1.0943
34 1 4.3266 1.5128 -1.0659
35 1 3.4510 0.6423 -2.3480
36 1 3.9346 2.3376 -2.5938
37 1 4.1318 3.0129 -0.4847
38 1 5.0563 5.2896 -0.4837
39 1 6.3505 9.1380 1.3198
40 1 5.0191 9.5928 2.4102
41 1 6.2911 8.6941 4.3393
42 1 7.6228 8.2391 3.2496
43 1 9.4237 12.0670 5.3019
44 1 2.5492 6.3191 2.8252
45 1 1.6096 4.0484 2.8285
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291243447.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:58
Heat of formation + Delta-G solvation = -101.020149 kcal
Electronic energy + Delta-G solvation = -26090.214964 eV
Core-core repulsion = 22265.770108 eV
Total energy + Delta-G solvation = -3824.444856 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.51605 -41.52332 -39.47762 -37.90350 -37.45268 -35.66649 -33.65398 -33.40829
-32.21083 -31.53400 -30.42200 -28.55761 -25.78085 -24.61147 -24.40881 -23.82868
-22.99606 -21.63855 -20.44884 -19.60944 -19.06577 -18.59609 -18.07090 -17.68806
-17.38835 -16.51650 -16.30117 -16.26373 -15.96549 -15.68113 -15.15636 -14.91026
-14.76310 -14.67342 -14.56720 -14.31438 -13.94626 -13.66968 -13.63306 -13.43803
-13.34616 -13.08059 -12.96377 -12.87555 -12.55901 -12.28080 -12.12004 -12.04486
-11.95375 -11.85581 -11.78914 -11.60906 -11.43604 -11.10053 -10.79503 -10.20486
-9.98083 -9.76298 -8.32475 -6.36411 -0.50682 0.14143 1.02756 1.33214
1.34812 1.36649 1.48978 1.76883 1.88601 2.33337 2.58150 3.03055
3.31046 3.56911 3.64861 3.77865 3.96035 4.09041 4.12083 4.18183
4.22293 4.24792 4.36632 4.39351 4.46823 4.49290 4.55247 4.72295
4.77028 4.81320 4.87294 4.94301 4.99428 5.01046 5.09196 5.11863
5.19383 5.25283 5.28210 5.33778 5.37248 5.53012 5.56054 5.66136
6.20391 6.21663 6.67848 6.75939 6.96831 7.28708 8.82785
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028262 B = 0.002294 C = 0.002238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 990.479978 B =12203.469997 C =12510.815961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.107 3.893
3 N -0.599 5.599
4 C 0.084 3.916
5 C -0.180 4.180
6 C 0.558 3.442
7 O -0.577 6.577
8 C -0.144 4.144
9 C -0.075 4.075
10 C -0.125 4.125
11 C 0.087 3.913
12 O -0.293 6.293
13 C 0.468 3.532
14 O -0.523 6.523
15 C -0.087 4.087
16 C 0.000 4.000
17 C -0.530 4.530
18 H 0.055 0.945
19 C 0.016 3.984
20 N -0.940 5.940
21 Si 0.936 3.064
22 H -0.268 1.268
23 H -0.280 1.280
24 H -0.260 1.260
25 C -0.140 4.140
26 C -0.058 4.058
27 H 0.032 0.968
28 H 0.069 0.931
29 H 0.082 0.918
30 H 0.111 0.889
31 H 0.063 0.937
32 H 0.102 0.898
33 H 0.089 0.911
34 H 0.055 0.945
35 H 0.076 0.924
36 H 0.092 0.908
37 H 0.179 0.821
38 H 0.161 0.839
39 H 0.123 0.877
40 H 0.120 0.880
41 H 0.016 0.984
42 H 0.017 0.983
43 H 0.268 0.732
44 H 0.136 0.864
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.511 -23.876 -18.391 34.364
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.015 4.015
3 N -0.331 5.331
4 C -0.037 4.037
5 C -0.238 4.238
6 C 0.347 3.653
7 O -0.457 6.457
8 C -0.147 4.147
9 C -0.093 4.093
10 C -0.143 4.143
11 C 0.045 3.955
12 O -0.208 6.208
13 C 0.314 3.686
14 O -0.410 6.410
15 C -0.124 4.124
16 C -0.037 4.037
17 C -0.567 4.567
18 H 0.073 0.927
19 C -0.182 4.182
20 N -0.580 5.580
21 Si 0.760 3.240
22 H -0.193 1.193
23 H -0.206 1.206
24 H -0.184 1.184
25 C -0.158 4.158
26 C -0.077 4.077
27 H 0.051 0.949
28 H 0.088 0.912
29 H 0.101 0.899
30 H 0.129 0.871
31 H 0.082 0.918
32 H 0.120 0.880
33 H 0.108 0.892
34 H 0.074 0.926
35 H 0.095 0.905
36 H 0.110 0.890
37 H 0.196 0.804
38 H 0.179 0.821
39 H 0.141 0.859
40 H 0.138 0.862
41 H 0.035 0.965
42 H 0.035 0.965
43 H 0.077 0.923
44 H 0.154 0.846
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -16.430 -24.361 -17.543 34.223
hybrid contribution 0.380 -0.011 1.182 1.242
sum -16.050 -24.372 -16.361 33.456
Atomic orbital electron populations
1.22081 0.95233 1.03137 1.01641 1.21605 0.94971 0.81074 1.03827
1.48082 1.64388 1.14738 1.05861 1.22178 0.99603 0.98032 0.83898
1.22381 0.95995 1.03867 1.01512 1.18444 0.77434 0.85531 0.83895
1.90774 1.53960 1.68252 1.32755 1.20038 1.01256 0.94084 0.99303
1.22065 0.93874 0.96248 0.97123 1.21417 1.00854 0.91987 1.00061
1.19205 0.94666 0.84116 0.97469 1.84643 1.54445 1.30010 1.51743
1.24949 0.74985 0.92222 0.76429 1.90670 1.58125 1.50503 1.41654
1.21410 1.00580 0.87556 1.02826 1.19353 0.94598 0.95643 0.94150
1.21311 1.24582 0.95780 1.15070 0.92661 1.25768 0.96010 0.97226
0.99239 1.70011 1.31707 1.21187 1.35137 0.85868 0.79505 0.79791
0.78798 1.19267 1.20562 1.18422 1.21390 0.97814 0.97630 0.99010
1.21093 0.98724 0.91367 0.96467 0.94877 0.91247 0.89943 0.87120
0.91814 0.87980 0.89245 0.92612 0.90493 0.88964 0.80390 0.82115
0.85920 0.86185 0.96533 0.96474 0.92302 0.84647 0.84337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.80 10.24 71.98 0.74 -1.07 16
2 C 0.11 1.28 6.08 86.38 0.52 1.81 16
3 N -0.60 -8.84 2.49 -825.44 -2.05 -10.89 16
4 C 0.08 0.66 5.57 86.38 0.48 1.14 16
5 C -0.18 -0.87 8.64 71.98 0.62 -0.25 16
6 C 0.56 12.90 7.34 86.73 0.64 13.53 16
7 O -0.58 -18.05 16.49 -3.96 -0.07 -18.12 16
8 C -0.14 -3.22 5.14 -20.08 -0.10 -3.33 16
9 C -0.08 -1.35 7.43 22.51 0.17 -1.19 16
10 C -0.13 -2.62 9.97 22.33 0.22 -2.40 16
11 C 0.09 2.35 5.11 22.62 0.12 2.47 16
12 O -0.29 -8.65 10.02 5.99 0.06 -8.59 16
13 C 0.47 16.39 7.80 71.24 0.56 16.94 16
14 O -0.52 -21.80 15.55 21.98 0.34 -21.46 16
15 C -0.09 -3.11 5.75 29.85 0.17 -2.93 16
16 C 0.00 0.01 3.33 29.85 0.10 0.11 16
17 C -0.53 -29.33 9.66 25.60 0.25 -29.09 16
18 H 0.06 3.22 7.99 -2.91 -0.02 3.20 16
19 C 0.02 0.91 5.47 84.66 0.46 1.37 16
20 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16
21 Si 0.94 45.34 27.47 68.60 1.88 47.23 16
22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16
23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
24 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16
25 C -0.14 -3.72 9.62 22.32 0.21 -3.50 16
26 C -0.06 -1.43 9.61 22.51 0.22 -1.21 16
27 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16
28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16
30 H 0.11 0.62 8.03 -2.39 -0.02 0.60 16
31 H 0.06 1.05 7.47 -2.39 -0.02 1.04 16
32 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16
33 H 0.09 0.82 5.15 -2.39 -0.01 0.80 16
34 H 0.06 0.44 6.69 -2.39 -0.02 0.42 16
35 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16
36 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16
37 H 0.18 2.09 3.35 -2.91 -0.01 2.08 16
38 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16
39 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16
40 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16
41 H 0.02 0.80 7.16 -2.39 -0.02 0.78 16
42 H 0.02 0.81 7.52 -2.39 -0.02 0.79 16
43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
44 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16
45 H 0.14 3.29 8.03 -2.91 -0.02 3.27 16
Total: -1.00 -75.69 374.45 6.78 -68.91
By element:
Atomic # 1 Polarization: 6.84 SS G_CDS: 0.94 Total: 7.77 kcal
Atomic # 6 Polarization: -12.96 SS G_CDS: 5.37 Total: -7.59 kcal
Atomic # 7 Polarization: -66.41 SS G_CDS: -1.75 Total: -68.16 kcal
Atomic # 8 Polarization: -48.50 SS G_CDS: 0.34 Total: -48.17 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal
Total: -75.69 6.78 -68.91 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291243447.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.107 kcal
(2) G-P(sol) polarization free energy of solvation -75.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds