Wall clock time and date at job start Tue Mar 31 2020 12:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00530 * 2 1 4 4 O 1.20827 * 119.99382 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00567 * 180.26894 * 3 2 1 6 6 H 1.08995 * 109.47101 * 312.77891 * 5 3 2 7 7 C 1.53007 * 109.46684 * 72.77309 * 5 3 2 8 8 N 1.46498 * 109.47595 * 192.77216 * 5 3 2 9 9 C 1.46495 * 119.99832 * 115.52854 * 8 5 3 10 10 C 1.50694 * 109.47157 * 84.66875 * 9 8 5 11 11 C 1.38226 * 120.00274 * 275.49277 * 10 9 8 12 12 C 1.38233 * 120.00374 * 179.76627 * 11 10 9 13 13 C 1.38241 * 119.99835 * 0.51057 * 12 11 10 14 14 C 1.38230 * 119.99663 * 359.74240 * 13 12 11 15 15 C 1.38237 * 120.00580 * 0.02562 * 14 13 12 16 16 C 1.34781 * 119.99740 * 295.53418 * 8 5 3 17 17 O 1.21271 * 120.00361 * 5.29505 * 16 8 5 18 18 C 1.50703 * 119.99430 * 185.29728 * 16 8 5 19 19 C 1.53002 * 109.46850 * 185.44747 * 18 16 8 20 20 C 1.50703 * 109.46850 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00044 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99633 * 180.02562 * 20 19 18 23 23 N 1.31520 * 120.00366 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47019 * 60.00479 * 24 22 20 26 26 H 1.48504 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47425 * 300.00481 * 24 22 20 28 28 H 1.09007 * 109.46559 * 59.99835 * 1 2 3 29 29 H 1.08995 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47355 * 300.00911 * 1 2 3 31 31 H 1.08997 * 109.46979 * 64.36479 * 7 5 3 32 32 H 1.09002 * 109.46749 * 184.36489 * 7 5 3 33 33 H 1.08997 * 109.47128 * 304.36806 * 7 5 3 34 34 H 1.09004 * 109.47193 * 204.67108 * 9 8 5 35 35 H 1.08999 * 109.47365 * 324.66620 * 9 8 5 36 36 H 1.08000 * 120.00060 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.00423 * 180.23579 * 12 11 10 38 38 H 1.07999 * 120.00363 * 179.72607 * 13 12 11 39 39 H 1.08004 * 120.00164 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.00639 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.47583 * 305.45321 * 18 16 8 42 42 H 1.09002 * 109.47163 * 65.45420 * 18 16 8 43 43 H 1.08997 * 109.47453 * 300.00082 * 19 18 16 44 44 H 1.09002 * 109.46688 * 60.00382 * 19 18 16 45 45 H 0.96996 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0061 6 1 3.9688 0.5953 0.7450 7 6 4.0922 0.8778 -1.3871 8 7 3.9849 2.6449 0.3004 9 6 4.7360 2.9243 1.5267 10 6 6.2026 2.6766 1.2850 11 6 6.7173 1.3995 1.4069 12 6 8.0617 1.1715 1.1804 13 6 8.8936 2.2225 0.8422 14 6 8.3800 3.5005 0.7254 15 6 7.0346 3.7277 0.9472 16 6 3.6788 3.6483 -0.5459 17 8 2.9759 3.4347 -1.5107 18 6 4.2102 5.0356 -0.2930 19 6 3.6101 6.0053 -1.3130 20 6 4.1410 7.3928 -1.0598 21 1 4.8371 7.5656 -0.2524 22 6 3.7379 8.4416 -1.8589 23 7 2.8897 8.2313 -2.8418 24 14 4.3965 10.1614 -1.5455 25 1 5.8756 10.1569 -1.6785 26 1 3.8129 11.1028 -2.5347 27 1 4.0242 10.5917 -0.1739 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 3.7526 1.6024 -2.1272 32 1 5.1819 0.8598 -1.3695 33 1 3.7165 -0.1115 -1.6482 34 1 4.5859 3.9645 1.8157 35 1 4.3840 2.2711 2.3252 36 1 6.0681 0.5791 1.6750 37 1 8.4631 0.1730 1.2719 38 1 9.9449 2.0451 0.6696 39 1 9.0300 4.3217 0.4616 40 1 6.6334 4.7263 0.8563 41 1 3.9366 5.3517 0.7136 42 1 5.2959 5.0322 -0.3902 43 1 3.8838 5.6893 -2.3196 44 1 2.5244 6.0088 -1.2159 45 1 2.6059 8.9692 -3.4037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292330178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:22 Heat of formation + Delta-G solvation = -92.623154 kcal Electronic energy + Delta-G solvation = -27577.750169 eV Core-core repulsion = 23753.669435 eV Total energy + Delta-G solvation = -3824.080735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81641 -39.61047 -38.70738 -36.29978 -35.53885 -33.63564 -32.68581 -31.14984 -30.79897 -30.20132 -27.78302 -26.19086 -25.70919 -24.33253 -22.70723 -21.97260 -21.47597 -20.50782 -18.62584 -17.66769 -17.16228 -16.94024 -16.27509 -16.21780 -15.66181 -15.46619 -15.36796 -14.83184 -14.69279 -14.37929 -13.71314 -13.53652 -13.44955 -13.32344 -13.08895 -12.82055 -12.54270 -12.33350 -12.14748 -12.03139 -12.02037 -11.88454 -11.63825 -11.24295 -11.17234 -10.92581 -10.87160 -10.71423 -10.57965 -10.25592 -9.87483 -9.56317 -9.13959 -8.98241 -8.93021 -8.79461 -8.57161 -8.28059 -5.92293 -3.96770 1.22764 1.36842 2.37956 2.53685 3.20960 3.36063 3.39957 3.41226 3.42772 3.81991 4.49348 4.65401 4.67515 4.78059 4.84120 4.95177 4.98947 5.03762 5.08978 5.17350 5.17675 5.40711 5.42497 5.47438 5.52963 5.55193 5.58117 5.62611 5.78531 5.92024 5.98775 6.18000 6.26043 6.30332 6.39178 6.44101 6.48799 6.51689 6.66969 6.90875 6.95808 7.68132 7.77804 7.91690 7.91912 8.11860 8.42004 8.79782 9.11517 9.66352 11.18619 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009012 B = 0.004829 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.223612 B = 5796.817167 C = 8410.905172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.440 3.560 4 O -0.469 6.469 5 C 0.167 3.833 6 H 0.113 0.887 7 C -0.166 4.166 8 N -0.611 5.611 9 C 0.150 3.850 10 C -0.104 4.104 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.118 4.118 15 C -0.101 4.101 16 C 0.521 3.479 17 O -0.508 6.508 18 C -0.129 4.129 19 C 0.038 3.962 20 C -0.526 4.526 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -19.612 10.869 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.279 3.721 4 O -0.352 6.352 5 C 0.060 3.940 6 H 0.131 0.869 7 C -0.223 4.223 8 N -0.348 5.348 9 C 0.027 3.973 10 C -0.106 4.106 11 C -0.127 4.127 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.136 4.136 15 C -0.119 4.119 16 C 0.312 3.688 17 O -0.380 6.380 18 C -0.168 4.168 19 C 0.001 3.999 20 C -0.564 4.564 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.296 -19.286 10.163 22.691 hybrid contribution 0.153 0.958 0.212 0.993 sum 6.449 -18.328 10.375 22.026 Atomic orbital electron populations 1.23198 0.76687 1.03162 1.02646 1.86462 1.23193 1.33833 1.84900 1.24294 0.92536 0.81632 0.73644 1.90756 1.66407 1.35977 1.42074 1.20347 0.86667 0.86059 1.00890 0.86925 1.22157 1.01877 1.02931 0.95380 1.48157 1.56678 1.05983 1.23951 1.20533 0.86782 1.03754 0.86205 1.20272 0.95843 0.93835 1.00629 1.20979 0.95379 0.96077 1.00253 1.21083 0.93798 0.98877 1.00504 1.21164 0.99674 0.93101 0.99861 1.21213 0.95567 0.97114 0.99687 1.21356 0.93545 0.99519 0.97528 1.21497 0.78890 0.86855 0.81567 1.90628 1.35095 1.83258 1.29068 1.22007 1.01325 0.90289 1.03208 1.18893 0.96568 0.91298 0.93150 1.21158 1.27032 0.93013 1.15211 0.92727 1.25011 0.95126 0.98964 0.95167 1.69993 1.32459 1.31835 1.18483 0.86680 0.79124 0.84350 0.77934 1.20258 1.21315 1.20270 0.91870 0.88397 0.92162 0.89196 0.90909 0.91008 0.88198 0.89941 0.86421 0.86319 0.86354 0.85886 0.84990 0.90528 0.89946 0.95788 0.95905 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -4.81 10.56 -39.26 -0.41 -5.22 16 3 C 0.44 6.94 6.87 36.00 0.25 7.19 16 4 O -0.47 -9.49 13.97 -26.05 -0.36 -9.86 16 5 C 0.17 2.21 3.18 -69.08 -0.22 1.99 16 6 H 0.11 1.06 7.51 -51.93 -0.39 0.67 16 7 C -0.17 -2.17 9.10 37.16 0.34 -1.84 16 8 N -0.61 -9.20 2.27 -168.80 -0.38 -9.59 16 9 C 0.15 1.74 5.32 -5.20 -0.03 1.71 16 10 C -0.10 -1.17 5.46 -104.63 -0.57 -1.74 16 11 C -0.11 -1.04 9.72 -39.59 -0.38 -1.42 16 12 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 13 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 14 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 15 C -0.10 -1.22 9.05 -39.58 -0.36 -1.58 16 16 C 0.52 10.49 6.45 -10.98 -0.07 10.41 16 17 O -0.51 -12.25 12.12 -16.35 -0.20 -12.45 16 18 C -0.13 -2.68 4.35 -27.88 -0.12 -2.80 16 19 C 0.04 1.06 4.28 -27.88 -0.12 0.94 16 20 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 24 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.06 0.75 8.13 -51.92 -0.42 0.32 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.09 1.54 5.91 -51.93 -0.31 1.23 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.18 6.03 -51.93 -0.31 0.87 16 35 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.12 0.88 7.67 -52.49 -0.40 0.48 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.13 1.67 6.31 -52.49 -0.33 1.34 16 41 H 0.08 1.47 6.94 -51.93 -0.36 1.11 16 42 H 0.08 1.56 5.71 -51.93 -0.30 1.27 16 43 H 0.02 0.72 8.04 -51.93 -0.42 0.30 16 44 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -36.93 373.35 -8.42 -45.36 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.58 Total: 0.51 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.83 Total: -4.12 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.35 Total: -36.63 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.98 Total: -27.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.93 -8.42 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292330178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.265 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds