Wall clock time and date at job start Tue Mar 31 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00530 * 2 1 4 4 O 1.20827 * 119.99382 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00567 * 180.26894 * 3 2 1 6 6 H 1.08995 * 109.47101 * 312.77891 * 5 3 2 7 7 C 1.53007 * 109.46684 * 72.77309 * 5 3 2 8 8 N 1.46498 * 109.47595 * 192.77216 * 5 3 2 9 9 C 1.46495 * 119.99832 * 115.52854 * 8 5 3 10 10 C 1.50694 * 109.47157 * 84.66875 * 9 8 5 11 11 C 1.38226 * 120.00274 * 275.49277 * 10 9 8 12 12 C 1.38233 * 120.00374 * 179.76627 * 11 10 9 13 13 C 1.38241 * 119.99835 * 0.51057 * 12 11 10 14 14 C 1.38230 * 119.99663 * 359.74240 * 13 12 11 15 15 C 1.38237 * 120.00580 * 0.02562 * 14 13 12 16 16 C 1.34781 * 119.99740 * 295.53418 * 8 5 3 17 17 O 1.21271 * 120.00361 * 5.29505 * 16 8 5 18 18 C 1.50703 * 119.99430 * 185.29728 * 16 8 5 19 19 C 1.53002 * 109.46850 * 185.44747 * 18 16 8 20 20 C 1.50703 * 109.46850 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00044 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99633 * 180.02562 * 20 19 18 23 23 N 1.31520 * 120.00366 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47019 * 60.00479 * 24 22 20 26 26 H 1.48504 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47425 * 300.00481 * 24 22 20 28 28 H 1.09007 * 109.46559 * 59.99835 * 1 2 3 29 29 H 1.08995 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47355 * 300.00911 * 1 2 3 31 31 H 1.08997 * 109.46979 * 64.36479 * 7 5 3 32 32 H 1.09002 * 109.46749 * 184.36489 * 7 5 3 33 33 H 1.08997 * 109.47128 * 304.36806 * 7 5 3 34 34 H 1.09004 * 109.47193 * 204.67108 * 9 8 5 35 35 H 1.08999 * 109.47365 * 324.66620 * 9 8 5 36 36 H 1.08000 * 120.00060 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.00423 * 180.23579 * 12 11 10 38 38 H 1.07999 * 120.00363 * 179.72607 * 13 12 11 39 39 H 1.08004 * 120.00164 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.00639 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.47583 * 305.45321 * 18 16 8 42 42 H 1.09002 * 109.47163 * 65.45420 * 18 16 8 43 43 H 1.08997 * 109.47453 * 300.00082 * 19 18 16 44 44 H 1.09002 * 109.46688 * 60.00382 * 19 18 16 45 45 H 0.96996 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0061 6 1 3.9688 0.5953 0.7450 7 6 4.0922 0.8778 -1.3871 8 7 3.9849 2.6449 0.3004 9 6 4.7360 2.9243 1.5267 10 6 6.2026 2.6766 1.2850 11 6 6.7173 1.3995 1.4069 12 6 8.0617 1.1715 1.1804 13 6 8.8936 2.2225 0.8422 14 6 8.3800 3.5005 0.7254 15 6 7.0346 3.7277 0.9472 16 6 3.6788 3.6483 -0.5459 17 8 2.9759 3.4347 -1.5107 18 6 4.2102 5.0356 -0.2930 19 6 3.6101 6.0053 -1.3130 20 6 4.1410 7.3928 -1.0598 21 1 4.8371 7.5656 -0.2524 22 6 3.7379 8.4416 -1.8589 23 7 2.8897 8.2313 -2.8418 24 14 4.3965 10.1614 -1.5455 25 1 5.8756 10.1569 -1.6785 26 1 3.8129 11.1028 -2.5347 27 1 4.0242 10.5917 -0.1739 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 3.7526 1.6024 -2.1272 32 1 5.1819 0.8598 -1.3695 33 1 3.7165 -0.1115 -1.6482 34 1 4.5859 3.9645 1.8157 35 1 4.3840 2.2711 2.3252 36 1 6.0681 0.5791 1.6750 37 1 8.4631 0.1730 1.2719 38 1 9.9449 2.0451 0.6696 39 1 9.0300 4.3217 0.4616 40 1 6.6334 4.7263 0.8563 41 1 3.9366 5.3517 0.7136 42 1 5.2959 5.0322 -0.3902 43 1 3.8838 5.6893 -2.3196 44 1 2.5244 6.0088 -1.2159 45 1 2.6059 8.9692 -3.4037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292330178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:21 Heat of formation + Delta-G solvation = -114.710968 kcal Electronic energy + Delta-G solvation = -27578.707969 eV Core-core repulsion = 23753.669435 eV Total energy + Delta-G solvation = -3825.038534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05777 -40.72933 -39.76413 -37.55227 -36.82678 -35.64567 -34.00260 -32.69863 -31.67318 -31.44106 -28.73380 -27.92197 -26.86581 -25.66430 -23.90553 -23.23893 -22.41161 -21.92688 -19.96308 -19.11498 -18.48765 -18.14884 -17.76533 -17.35943 -16.97369 -16.66032 -16.47236 -16.34967 -15.90671 -15.73507 -14.91823 -14.79968 -14.61991 -14.28697 -14.22167 -14.17146 -13.94089 -13.60751 -13.35902 -13.30973 -13.15694 -13.02898 -12.89035 -12.81330 -12.69440 -12.51443 -12.11235 -11.85794 -11.81189 -11.79372 -11.56116 -11.47181 -11.30614 -10.57262 -10.53730 -9.88779 -9.70492 -9.60417 -8.18354 -6.33063 0.43480 0.61159 1.17541 1.39659 1.41608 1.45355 1.52962 1.84082 2.14427 2.42258 3.01366 3.14297 3.65775 3.73453 3.86904 3.89870 4.02209 4.09811 4.24389 4.27757 4.29138 4.30151 4.37509 4.42187 4.47217 4.62617 4.64496 4.66411 4.74138 4.78484 4.84395 5.03078 5.16054 5.20183 5.25859 5.33648 5.44497 5.48997 5.60371 5.66296 5.73549 5.78339 5.83168 6.15776 6.21028 6.30085 6.74239 6.84776 7.30058 7.37351 8.94370 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009012 B = 0.004829 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.223612 B = 5796.817167 C = 8410.905172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.440 3.560 4 O -0.524 6.524 5 C 0.163 3.837 6 H 0.168 0.832 7 C -0.159 4.159 8 N -0.599 5.599 9 C 0.144 3.856 10 C -0.113 4.113 11 C -0.105 4.105 12 C -0.124 4.124 13 C -0.123 4.123 14 C -0.135 4.135 15 C -0.125 4.125 16 C 0.520 3.480 17 O -0.560 6.560 18 C -0.117 4.117 19 C 0.048 3.952 20 C -0.541 4.541 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.939 5.939 24 Si 0.974 3.026 25 H -0.260 1.260 26 H -0.287 1.287 27 H -0.262 1.262 28 H 0.044 0.956 29 H 0.141 0.859 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.102 0.898 43 H -0.019 1.019 44 H -0.026 1.026 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -21.724 13.409 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.281 3.719 4 O -0.411 6.411 5 C 0.058 3.942 6 H 0.185 0.815 7 C -0.217 4.217 8 N -0.333 5.333 9 C 0.023 3.977 10 C -0.114 4.114 11 C -0.123 4.123 12 C -0.142 4.142 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.143 4.143 16 C 0.310 3.690 17 O -0.437 6.437 18 C -0.156 4.156 19 C 0.011 3.989 20 C -0.579 4.579 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.579 5.579 24 Si 0.797 3.203 25 H -0.184 1.184 26 H -0.213 1.213 27 H -0.187 1.187 28 H 0.063 0.937 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.120 0.880 43 H -0.001 1.001 44 H -0.008 1.008 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.627 -21.455 12.764 26.413 hybrid contribution -0.565 1.478 -0.568 1.682 sum 8.062 -19.977 12.196 24.755 Atomic orbital electron populations 1.23478 0.75362 1.05665 1.01757 1.86456 1.24457 1.32242 1.84123 1.24850 0.93558 0.81465 0.71997 1.90751 1.67716 1.37866 1.44786 1.20761 0.85289 0.85515 1.02608 0.81452 1.22089 1.02831 1.02769 0.93977 1.47994 1.55695 1.05860 1.23760 1.20822 0.87084 1.04472 0.85328 1.20195 0.95057 0.94551 1.01624 1.21301 0.96083 0.95893 0.99045 1.21463 0.93618 0.99950 0.99167 1.21476 1.00955 0.92651 0.99040 1.21371 0.95326 0.98240 1.00334 1.21381 0.94491 0.99349 0.99126 1.21210 0.78495 0.87577 0.81707 1.90618 1.37467 1.84100 1.31483 1.21747 1.01995 0.90106 1.01758 1.18631 0.93839 0.93462 0.92999 1.21639 1.27171 0.93420 1.15688 0.90584 1.26149 0.95161 1.04416 0.94602 1.70191 1.34261 1.33490 1.19908 0.85377 0.79036 0.77607 0.78255 1.18444 1.21310 1.18679 0.93729 0.84103 0.92227 0.93891 0.89218 0.88519 0.88980 0.86204 0.83452 0.83511 0.84411 0.85618 0.86640 0.88690 0.87962 1.00062 1.00778 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -8.70 10.56 -51.42 -0.54 -9.24 16 3 C 0.44 13.58 6.87 71.24 0.49 14.06 16 4 O -0.52 -21.96 13.97 28.94 0.40 -21.55 16 5 C 0.16 3.97 3.18 44.25 0.14 4.12 16 6 H 0.17 2.25 7.51 -2.39 -0.02 2.23 16 7 C -0.16 -3.94 9.10 71.98 0.66 -3.29 16 8 N -0.60 -17.48 2.27 -806.34 -1.83 -19.31 16 9 C 0.14 3.01 5.32 85.63 0.46 3.47 16 10 C -0.11 -2.24 5.46 -19.87 -0.11 -2.35 16 11 C -0.10 -1.55 9.72 22.27 0.22 -1.33 16 12 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 13 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 14 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 15 C -0.12 -2.90 9.05 22.27 0.20 -2.70 16 16 C 0.52 21.79 6.45 87.66 0.57 22.35 16 17 O -0.56 -29.01 12.12 17.95 0.22 -28.80 16 18 C -0.12 -5.07 4.35 29.85 0.13 -4.94 16 19 C 0.05 2.84 4.28 29.85 0.13 2.97 16 20 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 21 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 22 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 23 N -0.94 -61.42 13.29 21.45 0.28 -61.14 16 24 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 28 H 0.04 1.07 8.13 -2.38 -0.02 1.05 16 29 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.04 1.52 5.91 -2.39 -0.01 1.50 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.08 6.03 -2.38 -0.01 2.06 16 35 H 0.12 1.65 8.05 -2.39 -0.02 1.63 16 36 H 0.15 1.27 7.67 -2.91 -0.02 1.25 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.12 2.95 6.31 -2.91 -0.02 2.93 16 41 H 0.09 3.73 6.94 -2.39 -0.02 3.71 16 42 H 0.10 4.00 5.71 -2.39 -0.01 3.99 16 43 H -0.02 -1.26 8.04 -2.39 -0.02 -1.28 16 44 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 45 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -88.50 373.35 6.98 -81.51 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.99 Total: 14.40 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.44 Total: -3.20 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.54 Total: -80.45 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: 0.08 Total: -59.59 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -88.50 6.98 -81.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292330178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.199 kcal (2) G-P(sol) polarization free energy of solvation -88.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds