Wall clock time and date at job start Tue Mar 31 2020 12:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47243 * 2 1 4 4 C 1.36044 * 117.00037 * 180.02562 * 3 2 1 5 5 C 1.38615 * 120.19901 * 0.22812 * 4 3 2 6 6 C 1.37838 * 120.01711 * 180.25520 * 5 4 3 7 7 C 1.38915 * 120.93651 * 359.39331 * 6 5 4 8 8 C 1.39176 * 119.02600 * 0.56023 * 7 6 5 9 9 C 1.38495 * 120.25518 * 359.60337 * 8 7 6 10 10 N 1.40113 * 119.92015 * 180.02562 * 9 8 7 11 11 C 1.34781 * 119.99625 * 24.87461 * 10 9 8 12 12 O 1.21293 * 120.00166 * 5.52048 * 11 10 9 13 13 C 1.50697 * 119.99786 * 185.52520 * 11 10 9 14 14 C 1.53000 * 109.47132 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47112 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99991 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99817 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99781 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00196 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46887 * 90.00075 * 19 17 15 21 21 H 1.48495 * 109.47499 * 210.00078 * 19 17 15 22 22 H 1.48504 * 109.47322 * 330.01042 * 19 17 15 23 23 O 1.36243 * 111.19597 * 181.03302 * 7 6 5 24 24 C 1.43775 * 109.18940 * 340.62467 * 23 7 6 25 25 H 1.08994 * 110.75172 * 269.61283 * 24 23 7 26 26 C 1.53006 * 110.90412 * 146.32951 * 24 23 7 27 27 C 1.51682 * 132.02698 * 178.87769 * 6 5 4 28 28 H 1.08998 * 109.46741 * 299.99846 * 1 2 3 29 29 H 1.08988 * 109.46798 * 59.99714 * 1 2 3 30 30 H 1.08995 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46741 * 240.00154 * 2 1 3 32 32 H 1.09003 * 109.47289 * 120.00094 * 2 1 3 33 33 H 1.07997 * 119.98791 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.86829 * 179.63304 * 8 7 6 35 35 H 0.96994 * 120.00209 * 205.14550 * 10 9 8 36 36 H 1.09004 * 109.47367 * 299.99575 * 13 11 10 37 37 H 1.09003 * 109.47573 * 59.99419 * 13 11 10 38 38 H 1.09000 * 109.46843 * 299.99551 * 14 13 11 39 39 H 1.08990 * 109.47515 * 59.99622 * 14 13 11 40 40 H 0.97005 * 119.99655 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47242 * 306.54924 * 26 24 23 42 42 H 1.09008 * 109.46972 * 66.55206 * 26 24 23 43 43 H 1.08996 * 109.47131 * 186.54332 * 26 24 23 44 44 H 1.09001 * 110.93218 * 313.79497 * 27 6 5 45 45 H 1.09005 * 110.93110 * 77.43198 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3552 1.5255 -0.0005 5 6 4.2033 0.4292 -0.0058 6 6 5.5692 0.6141 -0.0010 7 6 6.1171 1.8906 -0.0035 8 6 5.2652 2.9911 0.0009 9 6 3.8920 2.8106 -0.0006 10 7 3.0408 3.9235 0.0034 11 6 3.4729 5.1041 -0.4827 12 8 4.5605 5.1795 -1.0143 13 6 2.6047 6.3302 -0.3656 14 6 3.3244 7.5264 -0.9919 15 6 2.4559 8.7525 -0.8753 16 1 1.4874 8.6852 -0.4023 17 6 2.8978 9.9601 -1.3726 18 7 2.1402 11.0302 -1.2705 19 14 4.5733 10.0766 -2.1903 20 1 4.4338 9.8113 -3.6447 21 1 5.1299 11.4382 -1.9867 22 1 5.4882 9.0728 -1.5896 23 8 7.4786 1.8423 -0.0208 24 6 7.9110 0.5438 0.4198 25 1 8.0578 0.5316 1.4997 26 6 9.1906 0.1199 -0.3040 27 6 6.7266 -0.3662 0.0173 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7938 -0.5701 -0.0100 34 1 5.6765 3.9897 0.0050 35 1 2.1420 3.8454 0.3595 36 1 1.6628 6.1597 -0.8870 37 1 2.4057 6.5355 0.6863 38 1 4.2664 7.6971 -0.4708 39 1 3.5230 7.3209 -2.0437 40 1 2.4513 11.8799 -1.6201 41 1 9.0403 0.1938 -1.3810 42 1 10.0104 0.7736 -0.0058 43 1 9.4329 -0.9097 -0.0408 44 1 6.5645 -1.1462 0.7612 45 1 6.8857 -0.7994 -0.9702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292518944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:08 Heat of formation + Delta-G solvation = -86.408511 kcal Electronic energy + Delta-G solvation = -26431.741196 eV Core-core repulsion = 22607.929948 eV Total energy + Delta-G solvation = -3823.811247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43580 -40.06318 -39.20058 -36.60931 -34.40487 -33.53797 -33.15466 -31.98798 -31.42414 -30.15980 -29.22001 -27.01867 -25.61929 -24.09257 -22.39156 -22.08624 -21.80435 -20.87222 -19.74122 -18.23244 -18.02075 -17.45940 -16.83971 -16.39195 -16.08764 -15.70105 -15.37672 -15.08419 -14.46848 -14.24238 -14.08732 -13.88618 -13.52629 -13.37967 -13.31097 -13.18511 -12.90938 -12.75510 -12.59590 -12.53881 -12.40297 -12.08654 -11.79059 -11.61970 -11.44317 -11.29527 -11.04525 -10.97390 -10.65990 -10.16960 -10.06364 -9.94360 -9.76542 -9.25316 -9.17987 -8.50231 -8.40402 -7.53437 -6.02210 -4.01216 1.10587 1.30697 2.92122 2.93654 2.96973 3.39268 3.39897 3.46314 3.57141 3.69612 4.15096 4.28467 4.52066 4.61460 4.62760 4.67806 4.73558 4.83565 4.93434 4.96948 5.10801 5.19092 5.26949 5.29818 5.33325 5.40999 5.46813 5.49436 5.63669 5.71158 5.75263 5.81576 5.87061 5.91384 6.03457 6.05592 6.21440 6.37031 6.64042 6.69712 7.01842 7.31138 7.35834 7.41972 7.61861 7.78552 8.43596 8.54344 9.00521 9.60655 11.10539 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003334 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.932494 B = 8397.441348 C =10661.355734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.314 6.314 4 C 0.067 3.933 5 C -0.137 4.137 6 C -0.168 4.168 7 C 0.097 3.903 8 C -0.121 4.121 9 C 0.173 3.827 10 N -0.670 5.670 11 C 0.509 3.491 12 O -0.517 6.517 13 C -0.120 4.120 14 C 0.001 3.999 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 O -0.298 6.298 24 C 0.076 3.924 25 H 0.085 0.915 26 C -0.149 4.149 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.416 0.584 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -30.103 5.447 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.229 6.229 4 C 0.020 3.980 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.052 3.948 8 C -0.142 4.142 9 C 0.076 3.924 10 N -0.315 5.315 11 C 0.299 3.701 12 O -0.391 6.391 13 C -0.160 4.160 14 C -0.037 4.037 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 O -0.213 6.213 24 C 0.020 3.980 25 H 0.103 0.897 26 C -0.207 4.207 27 C -0.138 4.138 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.179 0.821 35 H 0.253 0.747 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.046 -29.447 4.961 30.285 hybrid contribution 0.341 -0.332 -0.266 0.545 sum 5.387 -29.778 4.696 30.624 Atomic orbital electron populations 1.21775 0.92675 1.02761 1.03764 1.22733 0.95849 0.82035 1.01130 1.86031 1.18034 1.29112 1.89717 1.18306 0.82761 0.92088 1.04882 1.19998 0.91637 0.97682 1.06333 1.20431 0.93967 0.94424 1.08163 1.19127 0.83301 0.93478 0.98918 1.20293 0.89504 0.99673 1.04723 1.16656 0.89299 0.84419 1.02023 1.43743 1.17116 1.08469 1.62184 1.21852 0.88071 0.84258 0.75911 1.90636 1.22384 1.84909 1.41171 1.21712 0.98967 0.91560 1.03753 1.19395 0.96299 0.91776 0.96254 1.21088 1.04290 0.91782 1.39152 0.90859 1.24965 0.97228 0.95617 0.95393 1.69912 1.37419 1.00087 1.46777 0.86803 0.85134 0.77343 0.80322 1.20228 1.21431 1.18479 1.86907 1.17129 1.34826 1.82408 1.23341 0.94939 0.80662 0.99096 0.89741 1.21877 0.95713 1.01656 1.01407 1.21807 0.91389 0.97402 1.03181 0.91403 0.91350 0.90503 0.92235 0.92254 0.85136 0.82125 0.74722 0.89165 0.89027 0.95663 0.96122 0.92702 0.91346 0.91254 0.90435 0.89389 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.45 5.47 37.16 0.20 0.65 16 3 O -0.31 -3.60 9.55 -19.88 -0.19 -3.79 16 4 C 0.07 0.86 6.71 -39.06 -0.26 0.60 16 5 C -0.14 -1.55 9.03 -39.59 -0.36 -1.90 16 6 C -0.17 -2.02 6.27 -104.03 -0.65 -2.68 16 7 C 0.10 1.45 7.03 -38.98 -0.27 1.18 16 8 C -0.12 -2.01 8.73 -39.14 -0.34 -2.36 16 9 C 0.17 2.65 6.43 -83.59 -0.54 2.12 16 10 N -0.67 -10.16 5.28 -9.81 -0.05 -10.21 16 11 C 0.51 9.48 7.63 -10.99 -0.08 9.40 16 12 O -0.52 -11.42 13.14 5.55 0.07 -11.35 16 13 C -0.12 -2.32 5.64 -27.88 -0.16 -2.47 16 14 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 15 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 19 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 23 O -0.30 -4.25 10.82 -20.52 -0.22 -4.47 16 24 C 0.08 0.72 4.25 -25.84 -0.11 0.61 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.15 -1.05 9.59 37.16 0.36 -0.70 16 27 C -0.10 -0.87 6.64 -26.51 -0.18 -1.04 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.47 8.14 -51.94 -0.42 0.05 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 33 H 0.13 1.08 6.32 -52.49 -0.33 0.75 16 34 H 0.16 3.05 5.76 -52.49 -0.30 2.75 16 35 H 0.42 5.16 8.34 -40.82 -0.34 4.82 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 39 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -35.13 369.23 -8.01 -43.15 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.76 Total: 1.01 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.53 Total: -10.64 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.72 Total: -37.53 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.34 Total: -19.61 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.13 -8.01 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292518944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.261 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds