Wall clock time and date at job start Tue Mar 31 2020 12:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47243 * 2 1 4 4 C 1.36044 * 117.00037 * 180.02562 * 3 2 1 5 5 C 1.38615 * 120.19901 * 0.22812 * 4 3 2 6 6 C 1.37838 * 120.01711 * 180.25520 * 5 4 3 7 7 C 1.38915 * 120.93651 * 359.39331 * 6 5 4 8 8 C 1.39176 * 119.02600 * 0.56023 * 7 6 5 9 9 C 1.38495 * 120.25518 * 359.60337 * 8 7 6 10 10 N 1.40113 * 119.92015 * 180.02562 * 9 8 7 11 11 C 1.34781 * 119.99625 * 24.87461 * 10 9 8 12 12 O 1.21293 * 120.00166 * 5.52048 * 11 10 9 13 13 C 1.50697 * 119.99786 * 185.52520 * 11 10 9 14 14 C 1.53000 * 109.47132 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47112 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99991 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99817 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99781 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00196 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46887 * 90.00075 * 19 17 15 21 21 H 1.48495 * 109.47499 * 210.00078 * 19 17 15 22 22 H 1.48504 * 109.47322 * 330.01042 * 19 17 15 23 23 O 1.36243 * 111.19597 * 181.03302 * 7 6 5 24 24 C 1.43775 * 109.18940 * 340.62467 * 23 7 6 25 25 H 1.08994 * 110.75172 * 269.61283 * 24 23 7 26 26 C 1.53006 * 110.90412 * 146.32951 * 24 23 7 27 27 C 1.51682 * 132.02698 * 178.87769 * 6 5 4 28 28 H 1.08998 * 109.46741 * 299.99846 * 1 2 3 29 29 H 1.08988 * 109.46798 * 59.99714 * 1 2 3 30 30 H 1.08995 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46741 * 240.00154 * 2 1 3 32 32 H 1.09003 * 109.47289 * 120.00094 * 2 1 3 33 33 H 1.07997 * 119.98791 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.86829 * 179.63304 * 8 7 6 35 35 H 0.96994 * 120.00209 * 205.14550 * 10 9 8 36 36 H 1.09004 * 109.47367 * 299.99575 * 13 11 10 37 37 H 1.09003 * 109.47573 * 59.99419 * 13 11 10 38 38 H 1.09000 * 109.46843 * 299.99551 * 14 13 11 39 39 H 1.08990 * 109.47515 * 59.99622 * 14 13 11 40 40 H 0.97005 * 119.99655 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47242 * 306.54924 * 26 24 23 42 42 H 1.09008 * 109.46972 * 66.55206 * 26 24 23 43 43 H 1.08996 * 109.47131 * 186.54332 * 26 24 23 44 44 H 1.09001 * 110.93218 * 313.79497 * 27 6 5 45 45 H 1.09005 * 110.93110 * 77.43198 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3552 1.5255 -0.0005 5 6 4.2033 0.4292 -0.0058 6 6 5.5692 0.6141 -0.0010 7 6 6.1171 1.8906 -0.0035 8 6 5.2652 2.9911 0.0009 9 6 3.8920 2.8106 -0.0006 10 7 3.0408 3.9235 0.0034 11 6 3.4729 5.1041 -0.4827 12 8 4.5605 5.1795 -1.0143 13 6 2.6047 6.3302 -0.3656 14 6 3.3244 7.5264 -0.9919 15 6 2.4559 8.7525 -0.8753 16 1 1.4874 8.6852 -0.4023 17 6 2.8978 9.9601 -1.3726 18 7 2.1402 11.0302 -1.2705 19 14 4.5733 10.0766 -2.1903 20 1 4.4338 9.8113 -3.6447 21 1 5.1299 11.4382 -1.9867 22 1 5.4882 9.0728 -1.5896 23 8 7.4786 1.8423 -0.0208 24 6 7.9110 0.5438 0.4198 25 1 8.0578 0.5316 1.4997 26 6 9.1906 0.1199 -0.3040 27 6 6.7266 -0.3662 0.0173 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7938 -0.5701 -0.0100 34 1 5.6765 3.9897 0.0050 35 1 2.1420 3.8454 0.3595 36 1 1.6628 6.1597 -0.8870 37 1 2.4057 6.5355 0.6863 38 1 4.2664 7.6971 -0.4708 39 1 3.5230 7.3209 -2.0437 40 1 2.4513 11.8799 -1.6201 41 1 9.0403 0.1938 -1.3810 42 1 10.0104 0.7736 -0.0058 43 1 9.4329 -0.9097 -0.0408 44 1 6.5645 -1.1462 0.7612 45 1 6.8857 -0.7994 -0.9702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292518944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:07 Heat of formation + Delta-G solvation = -109.886656 kcal Electronic energy + Delta-G solvation = -26432.759284 eV Core-core repulsion = 22607.929948 eV Total energy + Delta-G solvation = -3824.829336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41990 -41.23621 -40.25593 -37.65822 -35.66796 -35.53625 -33.99793 -33.36973 -32.59614 -31.21706 -30.12360 -28.46685 -26.94777 -24.84972 -23.80341 -22.95976 -22.60955 -22.28817 -21.21501 -19.45685 -19.02675 -18.92319 -18.18927 -17.39021 -17.21401 -16.75458 -16.47547 -16.33637 -16.23337 -15.46266 -15.29518 -14.99257 -14.85023 -14.63556 -14.32075 -14.23418 -13.94982 -13.88058 -13.45503 -13.43226 -13.23665 -13.16441 -12.97099 -12.83094 -12.64737 -12.26928 -12.13214 -12.05704 -12.00123 -11.86169 -11.77391 -11.57445 -11.41623 -10.91878 -10.79023 -10.67741 -9.53861 -8.54295 -8.32659 -6.35390 0.04536 0.28281 1.31986 1.34059 1.49193 1.53685 1.88235 2.12060 2.33792 2.35341 2.65273 3.03105 3.34279 3.57111 3.79352 3.81229 3.98267 4.08332 4.12248 4.12897 4.25394 4.30884 4.41814 4.43916 4.48867 4.53937 4.63202 4.69771 4.75454 4.83660 4.91545 4.96943 4.97626 5.00654 5.05709 5.19438 5.25098 5.30568 5.32444 5.34605 5.40972 5.53704 5.59309 6.10729 6.21649 6.37770 6.42291 6.70736 7.09801 7.29885 8.82978 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003334 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.932494 B = 8397.441348 C =10661.355734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.326 6.326 4 C 0.076 3.924 5 C -0.130 4.130 6 C -0.156 4.156 7 C 0.072 3.928 8 C -0.148 4.148 9 C 0.143 3.857 10 N -0.652 5.652 11 C 0.513 3.487 12 O -0.559 6.559 13 C -0.112 4.112 14 C 0.005 3.995 15 C -0.528 4.528 16 H 0.053 0.947 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.263 1.263 23 O -0.330 6.330 24 C 0.063 3.937 25 H 0.095 0.905 26 C -0.145 4.145 27 C -0.093 4.093 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.125 0.875 35 H 0.429 0.571 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.268 0.732 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -34.253 5.731 35.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.241 6.241 4 C 0.029 3.971 5 C -0.148 4.148 6 C -0.158 4.158 7 C 0.027 3.973 8 C -0.169 4.169 9 C 0.047 3.953 10 N -0.298 5.298 11 C 0.304 3.696 12 O -0.437 6.437 13 C -0.152 4.152 14 C -0.033 4.033 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.188 1.188 23 O -0.245 6.245 24 C 0.008 3.992 25 H 0.113 0.887 26 C -0.202 4.202 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.188 0.812 34 H 0.143 0.857 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.141 0.859 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.165 -33.645 5.268 34.444 hybrid contribution 0.240 0.819 -0.291 0.902 sum 5.404 -32.826 4.977 33.638 Atomic orbital electron populations 1.21811 0.91714 1.04166 1.03096 1.23105 0.96658 0.80410 1.02615 1.86039 1.16954 1.31763 1.89344 1.18313 0.83870 0.91399 1.03512 1.20398 0.91071 0.98850 1.04526 1.20904 0.95180 0.94108 1.05564 1.19289 0.83784 0.94255 0.99987 1.20135 0.90792 0.98911 1.07039 1.16751 0.88877 0.85290 1.04397 1.43378 1.17618 1.07634 1.61175 1.21552 0.87210 0.85048 0.75834 1.90635 1.23984 1.85654 1.43405 1.21523 0.99027 0.90042 1.04584 1.19238 0.95562 0.92641 0.95908 1.21398 1.03918 0.93203 1.38086 0.92879 1.25765 1.00714 0.95499 0.96271 1.70016 1.39282 1.00769 1.48220 0.85864 0.80889 0.77603 0.79568 1.19397 1.20240 1.18759 1.86878 1.17022 1.37810 1.82818 1.23751 0.96294 0.79041 1.00113 0.88684 1.21914 0.94367 1.03366 1.00588 1.21937 0.88864 0.97032 1.05102 0.91765 0.92355 0.88046 0.91015 0.90310 0.81218 0.85714 0.73174 0.87302 0.87253 0.97045 0.97197 0.92336 0.92176 0.91770 0.87193 0.85914 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.05 0.55 5.47 71.98 0.39 0.95 16 3 O -0.33 -6.70 9.55 -94.05 -0.90 -7.60 16 4 C 0.08 1.85 6.71 22.61 0.15 2.00 16 5 C -0.13 -2.50 9.03 22.26 0.20 -2.29 16 6 C -0.16 -3.39 6.27 -19.48 -0.12 -3.51 16 7 C 0.07 2.18 7.03 22.66 0.16 2.34 16 8 C -0.15 -5.18 8.73 22.56 0.20 -4.99 16 9 C 0.14 4.43 6.43 38.13 0.25 4.67 16 10 N -0.65 -20.01 5.28 -303.33 -1.60 -21.62 16 11 C 0.51 19.69 7.63 87.66 0.67 20.36 16 12 O -0.56 -26.03 13.14 -3.07 -0.04 -26.07 16 13 C -0.11 -4.37 5.64 29.85 0.17 -4.20 16 14 C 0.00 0.23 3.33 29.85 0.10 0.33 16 15 C -0.53 -30.85 9.66 25.60 0.25 -30.61 16 16 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 17 C 0.02 0.92 5.47 84.66 0.46 1.39 16 18 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 19 Si 0.94 47.74 27.47 68.60 1.88 49.62 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.26 -13.44 6.54 99.48 0.65 -12.79 16 23 O -0.33 -9.56 10.82 -96.33 -1.04 -10.60 16 24 C 0.06 1.07 4.25 31.17 0.13 1.21 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 C -0.15 -1.75 9.59 71.98 0.69 -1.06 16 27 C -0.09 -1.25 6.64 30.74 0.20 -1.05 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 32 H 0.08 0.66 7.68 -2.39 -0.02 0.64 16 33 H 0.17 1.89 6.32 -2.91 -0.02 1.88 16 34 H 0.13 5.22 5.76 -2.91 -0.02 5.20 16 35 H 0.43 10.42 8.34 -92.71 -0.77 9.64 16 36 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.01 0.60 7.15 -2.39 -0.02 0.58 16 39 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 40 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 1.16 7.93 -2.38 -0.02 1.14 16 Total: -1.00 -80.04 369.23 3.42 -76.62 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.18 Total: 14.14 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.64 Total: -15.16 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.30 Total: -80.95 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.98 Total: -44.27 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.62 kcal Total: -80.04 3.42 -76.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292518944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.265 kcal (2) G-P(sol) polarization free energy of solvation -80.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds